Wall clock time and date at job start Tue Mar 31 2020 17:58:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42895 * 113.99791 * 2 1 4 4 C 1.53004 * 109.47028 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.46612 * 175.00269 * 4 3 2 6 6 C 1.52990 * 109.47372 * 55.00088 * 4 3 2 7 7 O 1.45196 * 109.46905 * 294.99765 * 4 3 2 8 8 C 1.34813 * 117.00007 * 210.00383 * 7 4 3 9 9 O 1.21549 * 119.99911 * 359.97438 * 8 7 4 10 10 C 1.47097 * 119.99851 * 180.02562 * 8 7 4 11 11 C 1.43193 * 120.00319 * 352.98759 * 10 8 7 12 12 N 5.30368 * 121.10153 * 104.50605 * 2 1 3 13 13 C 1.37625 * 119.99989 * 172.99350 * 10 8 7 14 14 C 1.46716 * 120.00033 * 349.50946 * 13 10 8 15 15 C 1.40142 * 120.15772 * 315.91617 * 14 13 10 16 16 C 1.37870 * 119.93984 * 179.78819 * 15 14 13 17 17 C 1.38334 * 120.27154 * 0.49046 * 16 15 14 18 18 C 1.39048 * 120.31857 * 359.73960 * 17 16 15 19 19 O 1.35767 * 119.96726 * 180.02562 * 18 17 16 20 20 C 1.34834 * 116.99742 * 174.53921 * 19 18 17 21 21 H 1.08000 * 120.00131 * 5.06745 * 20 19 18 22 22 C 1.38657 * 119.99571 * 185.07020 * 20 19 18 23 23 N 1.31557 * 120.00047 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99756 * 179.97438 * 22 20 19 25 25 H 1.48508 * 109.47118 * 89.99848 * 24 22 20 26 26 H 1.48498 * 109.47164 * 209.99585 * 24 22 20 27 27 H 1.48494 * 109.46954 * 330.00006 * 24 22 20 28 28 C 1.38496 * 120.05999 * 0.02562 * 18 17 16 29 29 H 1.08995 * 109.47469 * 60.00159 * 1 2 3 30 30 H 1.08999 * 109.46892 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47139 * 299.99310 * 1 2 3 32 32 H 1.09000 * 109.47555 * 60.00228 * 3 2 1 33 33 H 1.09008 * 109.47156 * 300.00212 * 3 2 1 34 34 H 1.09001 * 109.47399 * 299.99699 * 6 4 3 35 35 H 1.09001 * 109.47450 * 59.99710 * 6 4 3 36 36 H 1.09000 * 109.47733 * 180.02562 * 6 4 3 37 37 H 1.07995 * 120.00291 * 169.50778 * 13 10 8 38 38 H 1.08001 * 120.03137 * 359.97438 * 15 14 13 39 39 H 1.08002 * 119.86088 * 180.23376 * 16 15 14 40 40 H 1.07995 * 119.83856 * 179.71933 * 17 16 15 41 41 H 0.97005 * 119.99594 * 180.02562 * 23 22 20 42 42 H 1.07998 * 120.14102 * 179.97438 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 1 3.9783 2.1766 -0.0902 6 6 3.9781 0.3199 -1.1825 7 8 3.9727 0.5695 1.2398 8 6 5.1892 0.9216 1.7019 9 8 5.8660 1.7205 1.0846 10 6 5.6979 0.3380 2.9527 11 6 4.8463 -0.4857 3.7569 12 7 4.1686 -1.1375 4.3965 13 6 6.9924 0.5838 3.3501 14 6 7.9331 1.2289 2.4274 15 6 7.9943 0.8240 1.0871 16 6 8.8769 1.4363 0.2229 17 6 9.7108 2.4431 0.6754 18 6 9.6627 2.8503 2.0040 19 8 10.4839 3.8395 2.4403 20 6 10.3098 4.2651 3.7078 21 1 9.6005 3.7669 4.3521 22 6 11.0416 5.3423 4.1840 23 7 11.9060 5.9487 3.3993 24 14 10.7999 5.9323 5.9399 25 1 11.7410 5.2149 6.8371 26 1 11.0628 7.3921 6.0121 27 1 9.4040 5.6590 6.3662 28 6 8.7778 2.2478 2.8827 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8900 32 1 1.6886 1.8464 0.8900 33 1 1.6885 1.8464 -0.8900 34 1 3.5352 -0.6721 -1.0930 35 1 3.6498 0.7816 -2.1137 36 1 5.0646 0.2334 -1.1828 37 1 7.3159 0.3018 4.3411 38 1 7.3486 0.0350 0.7309 39 1 8.9203 1.1258 -0.8106 40 1 10.4026 2.9149 -0.0066 41 1 12.4181 6.7021 3.7327 42 1 8.7396 2.5627 3.9150 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000917618531.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:13 Heat of formation + Delta-G solvation = -70.444407 kcal Electronic energy + Delta-G solvation = -27436.380744 eV Core-core repulsion = 23349.202518 eV Total energy + Delta-G solvation = -4087.178227 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.66453 -39.13103 -38.31743 -37.17996 -36.56773 -36.04074 -33.65776 -32.56954 -32.23813 -30.02296 -28.85504 -27.66720 -26.08790 -25.57848 -24.94031 -22.80551 -21.70061 -21.01442 -20.31269 -19.14109 -17.98066 -17.19269 -16.98191 -16.58084 -16.12975 -15.78025 -15.52556 -15.11685 -14.95556 -14.71567 -14.31922 -13.96311 -13.80886 -13.68966 -13.50719 -13.32276 -13.13961 -12.91289 -12.81143 -12.61941 -12.43452 -12.32967 -12.10921 -11.74776 -11.66343 -11.60565 -11.18071 -11.08040 -10.93065 -10.86407 -10.53543 -10.48321 -10.21708 -9.99551 -9.68830 -9.47613 -8.83058 -8.08230 -7.20906 -6.47881 -4.07824 0.27380 2.07924 2.33642 2.38546 2.50558 2.80769 3.10307 3.11828 3.16139 3.43100 3.49702 3.79952 3.93394 4.45702 4.48147 4.60114 4.71668 4.88428 4.92911 5.02534 5.03909 5.07298 5.09337 5.22779 5.29719 5.36694 5.42088 5.46588 5.63085 5.66930 5.71963 5.81384 6.04497 6.06242 6.19232 6.41337 6.57429 6.66498 6.81011 6.93452 7.08497 7.16247 7.31206 7.43850 7.65253 7.82740 7.94793 8.97428 9.66195 10.70012 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.015312 B = 0.002793 C = 0.002660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1828.179682 B =10024.193873 C =10523.981435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.379 6.379 3 C 0.064 3.936 4 C 0.091 3.909 5 H 0.103 0.897 6 C -0.165 4.165 7 O -0.344 6.344 8 C 0.508 3.492 9 O -0.464 6.464 10 C -0.134 4.134 11 C 0.266 3.734 12 N -0.419 5.419 13 C 0.110 3.890 14 C -0.071 4.071 15 C -0.121 4.121 16 C -0.087 4.087 17 C -0.161 4.161 18 C 0.141 3.859 19 O -0.178 6.178 20 C -0.394 4.394 21 H 0.091 0.909 22 C 0.040 3.960 23 N -0.862 5.862 24 Si 0.939 3.061 25 H -0.273 1.273 26 H -0.277 1.277 27 H -0.267 1.267 28 C -0.185 4.185 29 H 0.040 0.960 30 H 0.086 0.914 31 H 0.041 0.959 32 H 0.059 0.941 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.065 0.935 37 H 0.153 0.847 38 H 0.103 0.897 39 H 0.115 0.885 40 H 0.119 0.881 41 H 0.270 0.730 42 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.222 -9.363 -6.401 19.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.298 6.298 3 C -0.013 4.013 4 C 0.036 3.964 5 H 0.120 0.880 6 C -0.222 4.222 7 O -0.262 6.262 8 C 0.351 3.649 9 O -0.350 6.350 10 C -0.138 4.138 11 C -0.049 4.049 12 N -0.095 5.095 13 C 0.088 3.912 14 C -0.072 4.072 15 C -0.140 4.140 16 C -0.106 4.106 17 C -0.180 4.180 18 C 0.088 3.912 19 O -0.082 6.082 20 C -0.470 4.470 21 H 0.108 0.892 22 C -0.164 4.164 23 N -0.497 5.497 24 Si 0.763 3.237 25 H -0.199 1.199 26 H -0.203 1.203 27 H -0.192 1.192 28 C -0.205 4.205 29 H 0.059 0.941 30 H 0.104 0.896 31 H 0.060 0.940 32 H 0.077 0.923 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.084 0.916 37 H 0.171 0.829 38 H 0.121 0.879 39 H 0.133 0.867 40 H 0.137 0.863 41 H 0.080 0.920 42 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -16.651 -9.946 -5.745 20.228 hybrid contribution -0.228 0.936 0.601 1.135 sum -16.879 -9.011 -5.145 19.813 Atomic orbital electron populations 1.22749 0.81089 1.02877 0.99885 1.87966 1.19504 1.26977 1.95366 1.22673 0.91626 0.85699 1.01300 1.22789 0.92633 0.98608 0.82354 0.87969 1.22089 1.02352 1.01334 0.96447 1.86740 1.34236 1.65130 1.40069 1.20522 0.80053 0.80224 0.84122 1.91074 1.55761 1.31348 1.56851 1.17090 0.93146 1.08274 0.95337 1.25247 0.93321 0.93101 0.93194 1.81258 1.08154 1.10746 1.09379 1.23408 0.88896 0.81773 0.97153 1.18396 0.96800 0.98634 0.93339 1.20536 0.99933 1.01992 0.91573 1.20476 0.95743 0.95885 0.98459 1.20425 1.03157 1.00795 0.93658 1.19142 0.89788 0.89767 0.92478 1.84018 1.48729 1.44609 1.30841 1.21259 1.25121 1.14822 0.85790 0.89189 1.25260 0.95719 0.95397 1.00016 1.70033 1.22841 1.20910 1.35888 0.85748 0.79025 0.78373 0.80511 1.19866 1.20261 1.19186 1.21258 0.98727 0.99619 1.00852 0.94116 0.89566 0.94048 0.92293 0.91095 0.90771 0.90971 0.91579 0.82915 0.87923 0.86720 0.86317 0.92003 0.84942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.34 16 2 O -0.38 -4.03 9.79 -38.80 -0.38 -4.41 16 3 C 0.06 0.59 5.82 37.16 0.22 0.80 16 4 C 0.09 0.99 2.98 -26.73 -0.08 0.91 16 5 H 0.10 1.12 7.16 -51.93 -0.37 0.75 16 6 C -0.16 -1.63 9.35 37.15 0.35 -1.28 16 7 O -0.34 -4.63 9.41 -43.59 -0.41 -5.04 16 8 C 0.51 7.21 6.93 34.32 0.24 7.45 16 9 O -0.46 -7.47 11.50 -19.30 -0.22 -7.69 16 10 C -0.13 -1.76 5.74 -104.61 -0.60 -2.36 16 11 C 0.27 3.67 14.99 -22.44 -0.34 3.33 16 12 N -0.42 -6.45 18.55 41.88 0.78 -5.67 16 13 C 0.11 1.41 9.53 -36.38 -0.35 1.06 16 14 C -0.07 -1.17 4.58 -105.12 -0.48 -1.65 16 15 C -0.12 -1.94 6.63 -39.00 -0.26 -2.20 16 16 C -0.09 -1.45 10.02 -39.68 -0.40 -1.85 16 17 C -0.16 -3.17 9.99 -39.25 -0.39 -3.56 16 18 C 0.14 3.18 6.64 -39.19 -0.26 2.92 16 19 O -0.18 -4.83 9.76 -0.01 0.00 -4.83 16 20 C -0.39 -10.48 9.48 30.89 0.29 -10.19 16 21 H 0.09 2.18 5.20 -52.49 -0.27 1.90 16 22 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 23 N -0.86 -24.61 13.67 55.48 0.76 -23.85 16 24 Si 0.94 19.86 29.55 -169.99 -5.02 14.84 16 25 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 26 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 27 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 28 C -0.19 -3.63 8.92 -38.84 -0.35 -3.97 16 29 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.48 8.14 -51.92 -0.42 0.05 16 34 H 0.07 0.78 7.56 -51.93 -0.39 0.39 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.15 1.47 8.06 -52.49 -0.42 1.04 16 38 H 0.10 1.47 7.05 -52.49 -0.37 1.10 16 39 H 0.11 1.58 8.06 -52.49 -0.42 1.15 16 40 H 0.12 2.25 8.06 -52.49 -0.42 1.83 16 41 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 42 H 0.13 2.54 5.63 -52.49 -0.30 2.25 16 LS Contribution 373.72 15.07 5.63 5.63 Total: -1.00 -32.08 373.72 -5.32 -37.41 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -5.07 Total: 1.89 kcal Atomic # 6 Polarization: -6.87 SS G_CDS: -1.39 Total: -8.26 kcal Atomic # 7 Polarization: -31.06 SS G_CDS: 1.54 Total: -29.52 kcal Atomic # 8 Polarization: -20.96 SS G_CDS: -1.01 Total: -21.97 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -5.02 Total: 14.84 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.08 -5.32 -37.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000917618531.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.038 kcal (2) G-P(sol) polarization free energy of solvation -32.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds