Wall clock time and date at job start Tue Mar 31 2020 17:58:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42895 * 113.99791 * 2 1 4 4 C 1.53004 * 109.47028 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.46612 * 175.00269 * 4 3 2 6 6 C 1.52990 * 109.47372 * 55.00088 * 4 3 2 7 7 O 1.45196 * 109.46905 * 294.99765 * 4 3 2 8 8 C 1.34813 * 117.00007 * 210.00383 * 7 4 3 9 9 O 1.21549 * 119.99911 * 359.97438 * 8 7 4 10 10 C 1.47097 * 119.99851 * 180.02562 * 8 7 4 11 11 C 1.43193 * 120.00319 * 352.98759 * 10 8 7 12 12 N 5.30368 * 121.10153 * 104.50605 * 2 1 3 13 13 C 1.37625 * 119.99989 * 172.99350 * 10 8 7 14 14 C 1.46716 * 120.00033 * 349.50946 * 13 10 8 15 15 C 1.40142 * 120.15772 * 315.91617 * 14 13 10 16 16 C 1.37870 * 119.93984 * 179.78819 * 15 14 13 17 17 C 1.38334 * 120.27154 * 0.49046 * 16 15 14 18 18 C 1.39048 * 120.31857 * 359.73960 * 17 16 15 19 19 O 1.35767 * 119.96726 * 180.02562 * 18 17 16 20 20 C 1.34834 * 116.99742 * 174.53921 * 19 18 17 21 21 H 1.08000 * 120.00131 * 5.06745 * 20 19 18 22 22 C 1.38657 * 119.99571 * 185.07020 * 20 19 18 23 23 N 1.31557 * 120.00047 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99756 * 179.97438 * 22 20 19 25 25 H 1.48508 * 109.47118 * 89.99848 * 24 22 20 26 26 H 1.48498 * 109.47164 * 209.99585 * 24 22 20 27 27 H 1.48494 * 109.46954 * 330.00006 * 24 22 20 28 28 C 1.38496 * 120.05999 * 0.02562 * 18 17 16 29 29 H 1.08995 * 109.47469 * 60.00159 * 1 2 3 30 30 H 1.08999 * 109.46892 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47139 * 299.99310 * 1 2 3 32 32 H 1.09000 * 109.47555 * 60.00228 * 3 2 1 33 33 H 1.09008 * 109.47156 * 300.00212 * 3 2 1 34 34 H 1.09001 * 109.47399 * 299.99699 * 6 4 3 35 35 H 1.09001 * 109.47450 * 59.99710 * 6 4 3 36 36 H 1.09000 * 109.47733 * 180.02562 * 6 4 3 37 37 H 1.07995 * 120.00291 * 169.50778 * 13 10 8 38 38 H 1.08001 * 120.03137 * 359.97438 * 15 14 13 39 39 H 1.08002 * 119.86088 * 180.23376 * 16 15 14 40 40 H 1.07995 * 119.83856 * 179.71933 * 17 16 15 41 41 H 0.97005 * 119.99594 * 180.02562 * 23 22 20 42 42 H 1.07998 * 120.14102 * 179.97438 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 1 3.9783 2.1766 -0.0902 6 6 3.9781 0.3199 -1.1825 7 8 3.9727 0.5695 1.2398 8 6 5.1892 0.9216 1.7019 9 8 5.8660 1.7205 1.0846 10 6 5.6979 0.3380 2.9527 11 6 4.8463 -0.4857 3.7569 12 7 4.1686 -1.1375 4.3965 13 6 6.9924 0.5838 3.3501 14 6 7.9331 1.2289 2.4274 15 6 7.9943 0.8240 1.0871 16 6 8.8769 1.4363 0.2229 17 6 9.7108 2.4431 0.6754 18 6 9.6627 2.8503 2.0040 19 8 10.4839 3.8395 2.4403 20 6 10.3098 4.2651 3.7078 21 1 9.6005 3.7669 4.3521 22 6 11.0416 5.3423 4.1840 23 7 11.9060 5.9487 3.3993 24 14 10.7999 5.9323 5.9399 25 1 11.7410 5.2149 6.8371 26 1 11.0628 7.3921 6.0121 27 1 9.4040 5.6590 6.3662 28 6 8.7778 2.2478 2.8827 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8900 32 1 1.6886 1.8464 0.8900 33 1 1.6885 1.8464 -0.8900 34 1 3.5352 -0.6721 -1.0930 35 1 3.6498 0.7816 -2.1137 36 1 5.0646 0.2334 -1.1828 37 1 7.3159 0.3018 4.3411 38 1 7.3486 0.0350 0.7309 39 1 8.9203 1.1258 -0.8106 40 1 10.4026 2.9149 -0.0066 41 1 12.4181 6.7021 3.7327 42 1 8.7396 2.5627 3.9150 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000917618531.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:13 Heat of formation + Delta-G solvation = -89.048438 kcal Electronic energy + Delta-G solvation = -27437.187476 eV Core-core repulsion = 23349.202518 eV Total energy + Delta-G solvation = -4087.984958 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.78622 -40.64800 -39.23522 -38.41539 -37.79955 -37.28328 -34.92874 -34.14153 -33.38925 -31.40278 -30.38602 -28.32312 -27.39710 -26.77058 -26.17515 -23.97986 -23.22904 -21.95803 -21.66035 -20.28496 -19.66143 -18.67490 -18.08329 -17.39814 -17.17089 -16.73270 -16.56782 -16.39663 -16.27844 -16.12731 -15.77649 -15.46874 -15.04508 -14.81056 -14.75838 -14.48324 -14.31294 -14.11350 -13.89109 -13.76331 -13.65002 -13.50457 -13.24871 -13.00322 -12.86023 -12.63044 -12.42308 -12.41674 -12.29551 -12.09287 -11.98465 -11.56702 -11.42546 -11.21343 -10.95013 -10.65827 -10.64016 -9.49970 -8.79698 -8.40949 -6.08498 -0.88132 0.66920 0.87910 1.30332 1.35808 1.39597 1.48475 1.55975 1.76652 2.21589 2.36885 2.63250 2.79317 2.89523 3.20496 3.56892 3.63198 3.72918 3.75235 3.94479 4.15111 4.20566 4.25255 4.35761 4.38128 4.43562 4.50237 4.54577 4.61160 4.65348 4.75489 4.85814 4.87280 4.89869 5.09871 5.15958 5.20175 5.25266 5.42171 5.56345 5.68828 5.70742 6.06771 6.17108 6.17402 6.33253 6.72557 7.04297 7.85990 8.82371 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.015312 B = 0.002793 C = 0.002660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1828.179682 B =10024.193873 C =10523.981435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.406 6.406 3 C 0.064 3.936 4 C 0.082 3.918 5 H 0.101 0.899 6 C -0.159 4.159 7 O -0.351 6.351 8 C 0.511 3.489 9 O -0.489 6.489 10 C -0.122 4.122 11 C 0.286 3.714 12 N -0.443 5.443 13 C 0.121 3.879 14 C -0.064 4.064 15 C -0.104 4.104 16 C -0.081 4.081 17 C -0.174 4.174 18 C 0.102 3.898 19 O -0.233 6.233 20 C -0.408 4.408 21 H 0.106 0.894 22 C -0.024 4.024 23 N -0.923 5.923 24 Si 1.013 2.987 25 H -0.263 1.263 26 H -0.277 1.277 27 H -0.251 1.251 28 C -0.192 4.192 29 H 0.058 0.942 30 H 0.092 0.908 31 H 0.043 0.957 32 H 0.058 0.942 33 H 0.099 0.901 34 H 0.066 0.934 35 H 0.092 0.908 36 H 0.057 0.943 37 H 0.191 0.809 38 H 0.130 0.870 39 H 0.150 0.850 40 H 0.114 0.886 41 H 0.270 0.730 42 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.818 -11.161 -6.199 22.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.325 6.325 3 C -0.013 4.013 4 C 0.028 3.972 5 H 0.119 0.881 6 C -0.216 4.216 7 O -0.269 6.269 8 C 0.355 3.645 9 O -0.377 6.377 10 C -0.127 4.127 11 C -0.029 4.029 12 N -0.119 5.119 13 C 0.098 3.902 14 C -0.064 4.064 15 C -0.122 4.122 16 C -0.099 4.099 17 C -0.194 4.194 18 C 0.053 3.947 19 O -0.141 6.141 20 C -0.484 4.484 21 H 0.123 0.877 22 C -0.221 4.221 23 N -0.561 5.561 24 Si 0.833 3.167 25 H -0.188 1.188 26 H -0.202 1.202 27 H -0.174 1.174 28 C -0.211 4.211 29 H 0.077 0.923 30 H 0.111 0.889 31 H 0.062 0.938 32 H 0.076 0.924 33 H 0.116 0.884 34 H 0.085 0.915 35 H 0.111 0.889 36 H 0.076 0.924 37 H 0.208 0.792 38 H 0.148 0.852 39 H 0.168 0.832 40 H 0.132 0.868 41 H 0.079 0.921 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -19.304 -11.805 -5.564 23.302 hybrid contribution 0.307 1.231 0.302 1.305 sum -18.998 -10.574 -5.262 22.370 Atomic orbital electron populations 1.22910 0.79567 1.03703 1.00879 1.87918 1.21258 1.27739 1.95596 1.22748 0.90320 0.85579 1.02607 1.23087 0.93951 0.98537 0.81663 0.88123 1.22052 1.01669 1.00952 0.96956 1.86743 1.33671 1.65231 1.41241 1.20658 0.80126 0.79627 0.84128 1.91065 1.56530 1.32404 1.57680 1.16981 0.93076 1.07828 0.94809 1.25097 0.92738 0.92492 0.92550 1.81296 1.08859 1.11566 1.10192 1.23537 0.87928 0.80787 0.97910 1.18596 0.96236 0.97385 0.94209 1.20970 0.98665 1.01339 0.91251 1.20856 0.94361 0.94377 1.00321 1.20651 1.04028 1.01853 0.92850 1.19669 0.90950 0.89959 0.94150 1.83981 1.51476 1.47214 1.31384 1.21796 1.25287 1.15086 0.86277 0.87693 1.26512 0.95345 0.95450 1.04787 1.70188 1.25135 1.22321 1.38484 0.84650 0.79794 0.77585 0.74642 1.18832 1.20184 1.17439 1.21299 0.98954 1.00320 1.00514 0.92334 0.88933 0.93817 0.92382 0.88359 0.91481 0.88882 0.92426 0.79173 0.85241 0.83241 0.86781 0.92063 0.85018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 11.01 113.37 1.25 1.56 16 2 O -0.41 -7.76 9.79 -145.56 -1.43 -9.19 16 3 C 0.06 1.02 5.82 71.98 0.42 1.44 16 4 C 0.08 1.61 2.98 30.59 0.09 1.70 16 5 H 0.10 2.02 7.16 -2.39 -0.02 2.00 16 6 C -0.16 -2.77 9.35 71.98 0.67 -2.10 16 7 O -0.35 -8.69 9.41 -54.58 -0.51 -9.20 16 8 C 0.51 13.19 6.93 70.15 0.49 13.68 16 9 O -0.49 -14.59 11.50 19.68 0.23 -14.36 16 10 C -0.12 -2.82 5.74 -19.85 -0.11 -2.94 16 11 C 0.29 7.04 14.99 88.32 1.32 8.37 16 12 N -0.44 -12.55 18.55 19.02 0.35 -12.20 16 13 C 0.12 2.67 9.53 24.34 0.23 2.90 16 14 C -0.06 -1.94 4.58 -20.18 -0.09 -2.03 16 15 C -0.10 -3.01 6.63 22.65 0.15 -2.86 16 16 C -0.08 -2.54 10.02 22.21 0.22 -2.32 16 17 C -0.17 -6.96 9.99 22.49 0.22 -6.74 16 18 C 0.10 4.75 6.64 22.53 0.15 4.90 16 19 O -0.23 -13.39 9.76 -22.96 -0.22 -13.62 16 20 C -0.41 -22.61 9.48 67.92 0.64 -21.96 16 21 H 0.11 5.19 5.20 -2.91 -0.02 5.17 16 22 C -0.02 -1.31 5.49 84.83 0.47 -0.84 16 23 N -0.92 -55.55 13.67 21.61 0.30 -55.26 16 24 Si 1.01 41.48 29.55 68.60 2.03 43.50 16 25 H -0.26 -10.22 7.11 99.48 0.71 -9.52 16 26 H -0.28 -11.12 7.11 99.48 0.71 -10.41 16 27 H -0.25 -9.42 7.11 99.48 0.71 -8.71 16 28 C -0.19 -7.44 8.92 22.75 0.20 -7.24 16 29 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.09 0.99 8.14 -2.39 -0.02 0.98 16 31 H 0.04 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.10 1.02 8.14 -2.38 -0.02 1.00 16 34 H 0.07 1.27 7.56 -2.39 -0.02 1.25 16 35 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.19 2.82 8.06 -2.91 -0.02 2.80 16 38 H 0.13 3.16 7.05 -2.91 -0.02 3.14 16 39 H 0.15 3.61 8.06 -2.91 -0.02 3.59 16 40 H 0.11 4.53 8.06 -2.91 -0.02 4.50 16 41 H 0.27 14.99 8.31 -92.70 -0.77 14.22 16 42 H 0.13 5.03 5.63 -2.91 -0.02 5.01 16 Total: -1.00 -73.75 373.72 8.12 -65.63 By element: Atomic # 1 Polarization: 18.10 SS G_CDS: 1.06 Total: 19.16 kcal Atomic # 6 Polarization: -20.79 SS G_CDS: 6.33 Total: -14.47 kcal Atomic # 7 Polarization: -68.10 SS G_CDS: 0.65 Total: -67.46 kcal Atomic # 8 Polarization: -44.43 SS G_CDS: -1.94 Total: -46.37 kcal Atomic # 14 Polarization: 41.48 SS G_CDS: 2.03 Total: 43.50 kcal Total: -73.75 8.12 -65.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000917618531.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.419 kcal (2) G-P(sol) polarization free energy of solvation -73.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds