Wall clock time and date at job start Tue Mar 31 2020 17:58:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 113.99795 * 2 1 4 4 C 1.52997 * 109.47035 * 179.97438 * 3 2 1 5 5 H 1.09004 * 109.47201 * 185.00405 * 4 3 2 6 6 C 1.52994 * 109.47470 * 305.00424 * 4 3 2 7 7 O 1.45204 * 109.46947 * 65.00662 * 4 3 2 8 8 C 1.34809 * 117.00035 * 149.99658 * 7 4 3 9 9 O 1.21548 * 120.00024 * 0.02562 * 8 7 4 10 10 C 1.47101 * 119.99708 * 179.72074 * 8 7 4 11 11 C 1.43196 * 119.99985 * 0.28212 * 10 8 7 12 12 N 5.29190 * 122.46069 * 252.34834 * 2 1 3 13 13 C 1.37621 * 119.99944 * 180.27427 * 10 8 7 14 14 C 1.46713 * 119.99939 * 172.70876 * 13 10 8 15 15 C 1.40141 * 120.16275 * 331.66625 * 14 13 10 16 16 C 1.37861 * 119.94315 * 179.73884 * 15 14 13 17 17 C 1.38336 * 120.26640 * 0.51642 * 16 15 14 18 18 C 1.39044 * 120.32787 * 359.76149 * 17 16 15 19 19 O 1.35765 * 119.97108 * 179.97438 * 18 17 16 20 20 C 1.34837 * 116.99449 * 185.94689 * 19 18 17 21 21 H 1.07995 * 120.00045 * 354.91538 * 20 19 18 22 22 C 1.38653 * 119.99490 * 174.91038 * 20 19 18 23 23 N 1.31558 * 119.99882 * 180.02562 * 22 20 19 24 24 Si 1.86805 * 120.00417 * 0.02562 * 22 20 19 25 25 H 1.48494 * 109.47049 * 89.99551 * 24 22 20 26 26 H 1.48501 * 109.46989 * 210.00172 * 24 22 20 27 27 H 1.48500 * 109.46839 * 329.99755 * 24 22 20 28 28 C 1.38504 * 120.05298 * 359.97438 * 18 17 16 29 29 H 1.08997 * 109.47326 * 299.99847 * 1 2 3 30 30 H 1.09005 * 109.46905 * 59.99876 * 1 2 3 31 31 H 1.09002 * 109.46820 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.46943 * 60.00102 * 3 2 1 33 33 H 1.09001 * 109.47613 * 300.00126 * 3 2 1 34 34 H 1.09005 * 109.47544 * 179.97438 * 6 4 3 35 35 H 1.09002 * 109.47343 * 299.99805 * 6 4 3 36 36 H 1.09007 * 109.47378 * 59.99980 * 6 4 3 37 37 H 1.08000 * 119.99840 * 352.71821 * 13 10 8 38 38 H 1.08005 * 120.02650 * 359.97438 * 15 14 13 39 39 H 1.08000 * 119.86813 * 180.23427 * 16 15 14 40 40 H 1.08000 * 119.83412 * 179.73744 * 17 16 15 41 41 H 0.96999 * 120.00357 * 180.02562 * 23 22 20 42 42 H 1.07999 * 120.13835 * 179.97438 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.9784 2.1766 0.0903 6 6 3.9781 0.3198 1.1825 7 8 3.9727 0.5696 -1.2399 8 6 5.1892 0.9217 -1.7020 9 8 5.8660 1.7206 -1.0846 10 6 5.7003 0.3340 -2.9499 11 6 4.9031 -0.6075 -3.6769 12 7 4.2693 -1.3539 -4.2549 13 6 6.9445 0.6891 -3.4187 14 6 7.5215 -0.0116 -4.5713 15 6 7.1700 -1.3424 -4.8346 16 6 7.7108 -1.9948 -5.9220 17 6 8.6084 -1.3444 -6.7497 18 6 8.9695 -0.0260 -6.4956 19 8 9.8515 0.6051 -7.3123 20 6 10.2539 1.8379 -6.9426 21 1 9.8144 2.3126 -6.0779 22 6 11.2319 2.4958 -7.6727 23 7 11.6249 3.6983 -7.3118 24 14 11.9917 1.6747 -9.1688 25 1 11.2044 2.0242 -10.3784 26 1 13.3902 2.1457 -9.3351 27 1 11.9844 0.2015 -8.9820 28 6 8.4302 0.6440 -5.4099 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6885 1.8464 0.8900 33 1 1.6886 1.8464 -0.8899 34 1 5.0647 0.2334 1.1827 35 1 3.6498 0.7815 2.1137 36 1 3.5351 -0.6722 1.0929 37 1 7.4961 1.4835 -2.9380 38 1 6.4730 -1.8553 -4.1883 39 1 7.4361 -3.0191 -6.1260 40 1 9.0311 -1.8635 -7.5972 41 1 12.3089 4.1588 -7.8227 42 1 8.7100 1.6680 -5.2110 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000917618533.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:22 Heat of formation + Delta-G solvation = -92.781232 kcal Electronic energy + Delta-G solvation = -26697.324283 eV Core-core repulsion = 22609.177459 eV Total energy + Delta-G solvation = -4088.146824 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.74123 -41.02860 -39.31497 -38.86985 -37.59026 -37.54543 -35.04851 -34.36807 -33.45273 -31.59309 -30.73155 -28.33428 -27.40340 -26.77648 -26.28547 -23.82401 -23.36274 -22.31447 -21.88311 -20.19309 -19.87848 -18.68449 -18.21051 -17.41588 -17.16941 -17.02501 -16.80955 -16.56555 -16.54709 -16.10321 -15.73355 -15.58776 -15.39368 -14.90242 -14.72808 -14.51812 -14.25880 -14.21801 -14.09448 -13.92796 -13.72090 -13.63373 -13.28906 -13.19160 -12.88836 -12.71839 -12.56152 -12.39881 -12.38757 -12.04988 -12.01704 -11.84817 -11.51737 -11.43032 -11.21314 -10.85927 -10.65389 -9.64644 -9.21456 -8.48531 -6.22002 -1.05455 0.50377 0.63505 1.21829 1.29535 1.35387 1.38053 1.53484 1.71610 2.28971 2.31119 2.71042 2.71590 2.79341 2.96000 3.09162 3.32211 3.69422 3.77223 3.91499 3.97606 4.05054 4.18729 4.23222 4.25396 4.37565 4.46083 4.53494 4.54793 4.62902 4.67523 4.76361 4.81704 4.84159 4.87480 4.97347 5.18841 5.26008 5.33523 5.39147 5.46238 5.70030 5.77551 6.07596 6.17470 6.32648 6.58232 6.85433 7.55345 8.62011 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.021095 B = 0.002307 C = 0.002159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.026489 B =12131.764720 C =12964.785555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.408 6.408 3 C 0.063 3.937 4 C 0.079 3.921 5 H 0.109 0.891 6 C -0.162 4.162 7 O -0.349 6.349 8 C 0.532 3.468 9 O -0.512 6.512 10 C -0.125 4.125 11 C 0.276 3.724 12 N -0.437 5.437 13 C 0.116 3.884 14 C -0.075 4.075 15 C -0.155 4.155 16 C -0.076 4.076 17 C -0.154 4.154 18 C 0.117 3.883 19 O -0.239 6.239 20 C -0.400 4.400 21 H 0.091 0.909 22 C 0.014 3.986 23 N -0.918 5.918 24 Si 0.965 3.035 25 H -0.269 1.269 26 H -0.271 1.271 27 H -0.260 1.260 28 C -0.182 4.182 29 H 0.060 0.940 30 H 0.044 0.956 31 H 0.090 0.910 32 H 0.103 0.897 33 H 0.060 0.940 34 H 0.054 0.946 35 H 0.098 0.902 36 H 0.064 0.936 37 H 0.183 0.817 38 H 0.131 0.869 39 H 0.158 0.842 40 H 0.139 0.861 41 H 0.284 0.716 42 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.400 -6.358 15.362 24.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.328 6.328 3 C -0.014 4.014 4 C 0.025 3.975 5 H 0.127 0.873 6 C -0.219 4.219 7 O -0.266 6.266 8 C 0.377 3.623 9 O -0.403 6.403 10 C -0.130 4.130 11 C -0.037 4.037 12 N -0.113 5.113 13 C 0.094 3.906 14 C -0.075 4.075 15 C -0.174 4.174 16 C -0.093 4.093 17 C -0.173 4.173 18 C 0.067 3.933 19 O -0.146 6.146 20 C -0.476 4.476 21 H 0.108 0.892 22 C -0.186 4.186 23 N -0.558 5.558 24 Si 0.788 3.212 25 H -0.194 1.194 26 H -0.196 1.196 27 H -0.184 1.184 28 C -0.201 4.201 29 H 0.079 0.921 30 H 0.062 0.938 31 H 0.109 0.891 32 H 0.121 0.879 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.117 0.883 36 H 0.083 0.917 37 H 0.200 0.800 38 H 0.149 0.851 39 H 0.176 0.824 40 H 0.157 0.843 41 H 0.094 0.906 42 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -17.903 -7.320 14.475 24.158 hybrid contribution 0.578 0.857 -0.307 1.078 sum -17.325 -6.463 14.167 23.295 Atomic orbital electron populations 1.22910 0.79502 1.03662 1.00962 1.87924 1.21327 1.27910 1.95623 1.22784 0.90065 0.85587 1.02931 1.23227 0.94254 0.98751 0.81249 0.87276 1.22085 1.01510 1.01065 0.97226 1.86755 1.32961 1.65292 1.41543 1.20231 0.80006 0.78346 0.83675 1.90884 1.57895 1.33282 1.58240 1.17067 0.95393 1.03702 0.96839 1.25188 0.92528 0.92758 0.93259 1.81263 1.10008 1.10769 1.09300 1.23464 0.89445 0.90403 0.87290 1.18746 0.98450 0.94712 0.95614 1.21534 1.01927 0.94242 0.99694 1.21026 0.94588 1.00646 0.93087 1.20829 1.01907 0.91635 1.02944 1.19464 0.90739 0.92647 0.90430 1.83564 1.55156 1.30441 1.45427 1.20730 1.22043 0.89751 1.15059 0.89157 1.25215 0.96140 0.95751 1.01458 1.69715 1.31189 1.13332 1.41539 0.85290 0.77854 0.79552 0.78537 1.19379 1.19612 1.18432 1.21508 0.99933 1.01473 0.97224 0.92144 0.93781 0.89119 0.87892 0.92136 0.92660 0.88333 0.91662 0.79983 0.85091 0.82436 0.84304 0.90582 0.84938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 113.37 1.25 1.55 16 2 O -0.41 -7.50 9.79 -145.57 -1.43 -8.93 16 3 C 0.06 0.89 5.82 71.98 0.42 1.31 16 4 C 0.08 1.41 2.98 30.59 0.09 1.50 16 5 H 0.11 1.78 7.16 -2.39 -0.02 1.77 16 6 C -0.16 -2.58 9.35 71.98 0.67 -1.91 16 7 O -0.35 -8.41 9.39 -54.54 -0.51 -8.93 16 8 C 0.53 13.33 7.85 70.15 0.55 13.88 16 9 O -0.51 -13.78 15.56 19.68 0.31 -13.48 16 10 C -0.13 -3.19 5.83 -19.85 -0.12 -3.31 16 11 C 0.28 7.92 11.25 88.32 0.99 8.91 16 12 N -0.44 -13.79 17.87 19.02 0.34 -13.45 16 13 C 0.12 2.98 9.47 24.34 0.23 3.21 16 14 C -0.07 -2.35 5.60 -20.19 -0.11 -2.46 16 15 C -0.16 -4.60 8.33 22.64 0.19 -4.41 16 16 C -0.08 -2.19 10.02 22.20 0.22 -1.97 16 17 C -0.15 -5.30 9.99 22.49 0.22 -5.08 16 18 C 0.12 4.91 6.64 22.53 0.15 5.06 16 19 O -0.24 -11.91 8.58 -22.97 -0.20 -12.10 16 20 C -0.40 -21.79 9.94 67.92 0.68 -21.11 16 21 H 0.09 5.04 5.43 -2.91 -0.02 5.02 16 22 C 0.01 0.75 5.49 84.83 0.47 1.21 16 23 N -0.92 -52.24 13.96 21.61 0.30 -51.94 16 24 Si 0.96 43.23 28.62 68.60 1.96 45.20 16 25 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 26 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 27 H -0.26 -11.53 7.11 99.48 0.71 -10.83 16 28 C -0.18 -7.00 8.92 22.75 0.20 -6.80 16 29 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.04 0.49 8.14 -2.38 -0.02 0.47 16 31 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.10 0.81 8.14 -2.38 -0.02 0.79 16 33 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.05 0.98 8.14 -2.38 -0.02 0.96 16 35 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.06 1.19 7.56 -2.38 -0.02 1.17 16 37 H 0.18 4.04 7.61 -2.91 -0.02 4.01 16 38 H 0.13 3.62 5.23 -2.91 -0.02 3.60 16 39 H 0.16 3.47 8.06 -2.91 -0.02 3.45 16 40 H 0.14 4.31 8.06 -2.91 -0.02 4.29 16 41 H 0.28 14.95 8.31 -92.71 -0.77 14.18 16 42 H 0.13 5.40 5.63 -2.91 -0.02 5.39 16 Total: -1.00 -66.25 373.65 7.95 -58.31 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: 1.06 Total: 15.73 kcal Atomic # 6 Polarization: -16.51 SS G_CDS: 6.11 Total: -10.40 kcal Atomic # 7 Polarization: -66.03 SS G_CDS: 0.64 Total: -65.39 kcal Atomic # 8 Polarization: -41.61 SS G_CDS: -1.83 Total: -43.44 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 1.96 Total: 45.20 kcal Total: -66.25 7.95 -58.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000917618533.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.473 kcal (2) G-P(sol) polarization free energy of solvation -66.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds