Wall clock time and date at job start Tue Mar 31 2020 16:00:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38256 * 119.99804 * 2 1 4 4 C 1.38210 * 120.00111 * 180.23006 * 3 2 1 5 5 C 1.38260 * 119.99813 * 359.81150 * 4 3 2 6 6 C 1.38211 * 120.00030 * 359.97438 * 5 4 3 7 7 C 1.38206 * 120.00167 * 179.79194 * 2 1 3 8 8 C 1.50704 * 120.00221 * 359.97438 * 7 2 1 9 9 O 1.42899 * 109.47183 * 179.72788 * 8 7 2 10 10 C 1.42905 * 113.99406 * 180.02562 * 9 8 7 11 11 C 1.50709 * 109.46650 * 179.97438 * 10 9 8 12 12 O 1.21283 * 119.99688 * 0.02562 * 11 10 9 13 13 N 1.34779 * 119.99796 * 180.02562 * 11 10 9 14 14 C 1.46497 * 119.99943 * 180.02562 * 13 11 10 15 15 H 1.09007 * 109.47078 * 34.99474 * 14 13 11 16 16 C 1.50694 * 109.47115 * 154.99835 * 14 13 11 17 17 H 1.08000 * 120.00563 * 359.97438 * 16 14 13 18 18 C 1.37885 * 119.99902 * 180.02562 * 16 14 13 19 19 N 1.31516 * 119.99913 * 359.97438 * 18 16 14 20 20 Si 1.86798 * 119.99766 * 179.97438 * 18 16 14 21 21 H 1.48506 * 109.46985 * 179.97438 * 20 18 16 22 22 H 1.48494 * 109.47276 * 299.99832 * 20 18 16 23 23 H 1.48498 * 109.47150 * 60.00043 * 20 18 16 24 24 C 1.53000 * 109.47021 * 275.00054 * 14 13 11 25 25 F 1.39897 * 109.46935 * 299.99908 * 24 14 13 26 26 F 1.39899 * 109.47307 * 59.99998 * 24 14 13 27 27 F 1.39901 * 109.47163 * 180.02562 * 24 14 13 28 28 H 1.08996 * 109.47345 * 270.20699 * 1 2 3 29 29 H 1.09007 * 109.47349 * 30.21330 * 1 2 3 30 30 H 1.09003 * 109.47213 * 150.21043 * 1 2 3 31 31 H 1.08007 * 120.00331 * 0.06787 * 3 2 1 32 32 H 1.07997 * 120.00204 * 179.83828 * 4 3 2 33 33 H 1.08006 * 120.00321 * 179.97438 * 5 4 3 34 34 H 1.08004 * 120.00420 * 180.02562 * 6 5 4 35 35 H 1.09007 * 109.46834 * 59.73120 * 8 7 2 36 36 H 1.08997 * 109.47282 * 299.73303 * 8 7 2 37 37 H 1.08998 * 109.46927 * 60.00686 * 10 9 8 38 38 H 1.08995 * 109.47572 * 300.00246 * 10 9 8 39 39 H 0.96997 * 119.99849 * 0.02562 * 13 11 10 40 40 H 0.97001 * 119.99646 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5803 1.1974 -0.0048 5 6 4.2716 0.0001 -0.0057 6 6 3.5806 -1.1969 -0.0012 7 6 2.1981 -1.1969 0.0043 8 6 1.4446 -2.5021 0.0097 9 8 2.3733 -3.5882 0.0071 10 6 1.7586 -4.8783 0.0112 11 6 2.8254 -5.9428 0.0074 12 8 3.9965 -5.6277 0.0022 13 7 2.4779 -7.2450 0.0097 14 6 3.5148 -8.2799 0.0066 15 1 4.3689 -7.9402 0.5925 16 6 2.9630 -9.5457 0.6102 17 1 1.9422 -9.5762 0.9615 18 6 3.7619 -10.6646 0.7150 19 7 5.0051 -10.6274 0.2877 20 14 3.0781 -12.2334 1.4639 21 1 4.1292 -13.2825 1.4606 22 1 2.6469 -11.9685 2.8599 23 1 1.9146 -12.6967 0.6659 24 6 3.9591 -8.5523 -1.4319 25 9 2.8629 -8.9882 -2.1839 26 9 4.4713 -7.3772 -1.9922 27 9 4.9489 -9.5410 -1.4350 28 1 -0.3634 0.0037 1.0276 29 1 -0.3634 0.8881 -0.5172 30 1 -0.3634 -0.8919 -0.5106 31 1 1.6582 2.1327 0.0011 32 1 4.1203 2.1327 -0.0074 33 1 5.3517 0.0000 -0.0098 34 1 4.1206 -2.1322 -0.0015 35 1 0.8140 -2.5611 -0.8775 36 1 0.8219 -2.5585 0.9025 37 1 1.1349 -4.9863 -0.8761 38 1 1.1422 -4.9843 0.9038 39 1 1.5412 -7.4970 0.0135 40 1 5.5672 -11.4145 0.3618 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928799865.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:00:53 Heat of formation + Delta-G solvation = -197.211883 kcal Electronic energy + Delta-G solvation = -28368.646061 eV Core-core repulsion = 23734.114043 eV Total energy + Delta-G solvation = -4634.532017 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.118 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -48.36342 -46.01822 -45.62630 -39.79944 -39.06442 -37.25726 -34.65036 -33.20090 -32.62373 -31.74959 -29.34972 -27.60166 -26.76700 -25.65337 -24.56346 -22.02047 -21.58683 -20.93311 -19.93943 -17.73348 -17.04414 -16.83170 -16.68887 -16.60751 -16.35238 -16.16620 -15.54051 -15.03316 -14.93004 -14.75909 -14.44014 -14.18864 -13.69480 -13.49086 -13.17442 -12.95548 -12.93920 -12.55588 -12.52724 -12.41814 -12.37243 -12.28984 -12.04003 -11.95020 -11.91396 -11.81613 -11.20332 -11.05169 -10.91391 -10.88696 -10.80946 -10.43170 -9.87304 -9.71424 -9.19866 -8.83222 -8.74994 -8.66559 -8.31388 -6.26109 -4.50799 1.21890 1.34194 3.09715 3.14017 3.18624 3.23630 3.25690 3.66287 4.10899 4.23250 4.54236 4.67440 4.69034 4.86433 4.90642 5.02931 5.03862 5.09181 5.18795 5.24459 5.27226 5.33398 5.41360 5.46384 5.56062 5.71581 5.82298 5.85353 5.93485 6.05106 6.19006 6.36080 6.47688 6.52764 6.88044 6.94354 7.03076 7.16772 7.43576 7.60045 8.25774 8.46571 8.83677 9.17144 10.65472 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.023756 B = 0.002553 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.383357 B =10966.552843 C =11345.332282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.085 4.085 3 C -0.125 4.125 4 C -0.120 4.120 5 C -0.127 4.127 6 C -0.088 4.088 7 C -0.089 4.089 8 C 0.102 3.898 9 O -0.357 6.357 10 C 0.046 3.954 11 C 0.505 3.495 12 O -0.515 6.515 13 N -0.711 5.711 14 C 0.247 3.753 15 H 0.086 0.914 16 C -0.554 4.554 17 H 0.077 0.923 18 C 0.065 3.935 19 N -0.839 5.839 20 Si 0.916 3.084 21 H -0.283 1.283 22 H -0.273 1.273 23 H -0.273 1.273 24 C 0.416 3.584 25 F -0.209 7.209 26 F -0.217 7.217 27 F -0.136 7.136 28 H 0.071 0.929 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.120 0.880 32 H 0.119 0.881 33 H 0.122 0.878 34 H 0.140 0.860 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.399 0.601 40 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.464 17.027 -0.055 19.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.085 4.085 3 C -0.143 4.143 4 C -0.138 4.138 5 C -0.145 4.145 6 C -0.105 4.105 7 C -0.089 4.089 8 C 0.025 3.975 9 O -0.275 6.275 10 C -0.034 4.034 11 C 0.289 3.711 12 O -0.389 6.389 13 N -0.363 5.363 14 C 0.142 3.858 15 H 0.103 0.897 16 C -0.591 4.591 17 H 0.096 0.904 18 C -0.144 4.144 19 N -0.472 5.472 20 Si 0.742 3.258 21 H -0.209 1.209 22 H -0.198 1.198 23 H -0.198 1.198 24 C 0.360 3.640 25 F -0.191 7.191 26 F -0.199 7.199 27 F -0.118 7.118 28 H 0.090 0.910 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.138 0.862 32 H 0.137 0.863 33 H 0.140 0.860 34 H 0.158 0.842 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.095 0.905 38 H 0.097 0.903 39 H 0.233 0.767 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.180 17.164 -0.112 19.014 hybrid contribution -0.924 -1.035 -0.020 1.388 sum -9.105 16.129 -0.132 18.521 Atomic orbital electron populations 1.20829 0.91310 1.02875 1.02404 1.19598 0.95859 0.92348 1.00686 1.20906 0.94276 0.97042 1.02111 1.21143 0.94303 0.98047 1.00279 1.21223 1.00131 0.92431 1.00703 1.21216 0.93724 0.99046 0.96555 1.19513 0.94350 0.92924 1.02151 1.21253 0.91046 0.84565 1.00601 1.87989 1.31747 1.12337 1.95446 1.22241 0.95005 0.83799 1.02338 1.20142 0.89945 0.83497 0.77520 1.90728 1.19018 1.81696 1.47491 1.45960 1.10958 1.04813 1.74532 1.19722 0.90352 0.87934 0.87796 0.89652 1.20830 0.99894 0.94510 1.43857 0.90444 1.25092 0.95011 0.99647 0.94668 1.70392 1.06317 1.30507 1.39976 0.86257 0.78713 0.81196 0.79590 1.20853 1.19772 1.19815 1.23135 0.75495 0.73839 0.91522 1.92986 1.56042 1.90282 1.79829 1.93078 1.88067 1.50472 1.88277 1.93406 1.61776 1.60423 1.96152 0.91027 0.91453 0.91462 0.86182 0.86268 0.85972 0.84213 0.91831 0.91830 0.90461 0.90336 0.76744 0.91998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.85 9.60 36.01 0.35 -0.51 16 2 C -0.08 -0.87 5.88 -104.63 -0.62 -1.48 16 3 C -0.13 -1.21 9.70 -39.59 -0.38 -1.59 16 4 C -0.12 -1.20 10.05 -39.58 -0.40 -1.60 16 5 C -0.13 -1.47 10.05 -39.58 -0.40 -1.87 16 6 C -0.09 -1.18 9.38 -39.58 -0.37 -1.55 16 7 C -0.09 -1.09 5.88 -104.62 -0.62 -1.71 16 8 C 0.10 1.16 5.05 36.01 0.18 1.34 16 9 O -0.36 -5.45 8.36 -55.14 -0.46 -5.91 16 10 C 0.05 0.64 6.42 36.01 0.23 0.87 16 11 C 0.51 9.84 7.44 -10.98 -0.08 9.76 16 12 O -0.51 -12.39 15.07 -14.36 -0.22 -12.61 16 13 N -0.71 -14.05 4.98 -54.93 -0.27 -14.32 16 14 C 0.25 6.07 2.21 -69.09 -0.15 5.92 16 15 H 0.09 2.36 7.58 -51.92 -0.39 1.97 16 16 C -0.55 -13.88 8.46 -34.44 -0.29 -14.17 16 17 H 0.08 1.81 7.74 -52.49 -0.41 1.40 16 18 C 0.06 1.67 5.20 -17.82 -0.09 1.58 16 19 N -0.84 -22.87 9.50 55.43 0.53 -22.34 16 20 Si 0.92 19.82 29.54 -169.99 -5.02 14.80 16 21 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 22 H -0.27 -5.77 7.11 56.52 0.40 -5.36 16 23 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 24 C 0.42 10.65 2.81 37.16 0.10 10.75 16 25 F -0.21 -5.11 16.94 2.25 0.04 -5.08 16 26 F -0.22 -5.56 15.68 2.25 0.04 -5.53 16 27 F -0.14 -3.78 12.91 2.25 0.03 -3.75 16 28 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.41 8.09 -51.92 -0.42 -0.01 16 30 H 0.07 0.45 6.63 -51.93 -0.34 0.10 16 31 H 0.12 0.87 8.06 -52.48 -0.42 0.45 16 32 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 33 H 0.12 1.22 8.06 -52.48 -0.42 0.80 16 34 H 0.14 2.16 7.01 -52.48 -0.37 1.79 16 35 H 0.06 0.61 7.48 -51.93 -0.39 0.22 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.40 6.52 8.54 -40.82 -0.35 6.17 16 40 H 0.27 6.97 8.31 -40.82 -0.34 6.64 16 LS Contribution 350.54 15.07 5.28 5.28 Total: -1.00 -31.78 350.54 -7.36 -39.14 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: -4.76 Total: 4.58 kcal Atomic # 6 Polarization: 8.26 SS G_CDS: -2.54 Total: 5.73 kcal Atomic # 7 Polarization: -36.92 SS G_CDS: 0.25 Total: -36.67 kcal Atomic # 8 Polarization: -17.84 SS G_CDS: -0.68 Total: -18.51 kcal Atomic # 9 Polarization: -14.45 SS G_CDS: 0.10 Total: -14.35 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.02 Total: 14.80 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.78 -7.36 -39.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928799865.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -158.068 kcal (2) G-P(sol) polarization free energy of solvation -31.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -197.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds