Wall clock time and date at job start Tue Mar 31 2020 16:00:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38256 * 119.99804 * 2 1 4 4 C 1.38210 * 120.00111 * 180.23006 * 3 2 1 5 5 C 1.38260 * 119.99813 * 359.81150 * 4 3 2 6 6 C 1.38211 * 120.00030 * 359.97438 * 5 4 3 7 7 C 1.38206 * 120.00167 * 179.79194 * 2 1 3 8 8 C 1.50704 * 120.00221 * 359.97438 * 7 2 1 9 9 O 1.42899 * 109.47183 * 179.72788 * 8 7 2 10 10 C 1.42905 * 113.99406 * 180.02562 * 9 8 7 11 11 C 1.50709 * 109.46650 * 179.97438 * 10 9 8 12 12 O 1.21283 * 119.99688 * 0.02562 * 11 10 9 13 13 N 1.34779 * 119.99796 * 180.02562 * 11 10 9 14 14 C 1.46497 * 119.99943 * 180.02562 * 13 11 10 15 15 H 1.09007 * 109.47078 * 34.99474 * 14 13 11 16 16 C 1.50694 * 109.47115 * 154.99835 * 14 13 11 17 17 H 1.08000 * 120.00563 * 359.97438 * 16 14 13 18 18 C 1.37885 * 119.99902 * 180.02562 * 16 14 13 19 19 N 1.31516 * 119.99913 * 359.97438 * 18 16 14 20 20 Si 1.86798 * 119.99766 * 179.97438 * 18 16 14 21 21 H 1.48506 * 109.46985 * 179.97438 * 20 18 16 22 22 H 1.48494 * 109.47276 * 299.99832 * 20 18 16 23 23 H 1.48498 * 109.47150 * 60.00043 * 20 18 16 24 24 C 1.53000 * 109.47021 * 275.00054 * 14 13 11 25 25 F 1.39897 * 109.46935 * 299.99908 * 24 14 13 26 26 F 1.39899 * 109.47307 * 59.99998 * 24 14 13 27 27 F 1.39901 * 109.47163 * 180.02562 * 24 14 13 28 28 H 1.08996 * 109.47345 * 270.20699 * 1 2 3 29 29 H 1.09007 * 109.47349 * 30.21330 * 1 2 3 30 30 H 1.09003 * 109.47213 * 150.21043 * 1 2 3 31 31 H 1.08007 * 120.00331 * 0.06787 * 3 2 1 32 32 H 1.07997 * 120.00204 * 179.83828 * 4 3 2 33 33 H 1.08006 * 120.00321 * 179.97438 * 5 4 3 34 34 H 1.08004 * 120.00420 * 180.02562 * 6 5 4 35 35 H 1.09007 * 109.46834 * 59.73120 * 8 7 2 36 36 H 1.08997 * 109.47282 * 299.73303 * 8 7 2 37 37 H 1.08998 * 109.46927 * 60.00686 * 10 9 8 38 38 H 1.08995 * 109.47572 * 300.00246 * 10 9 8 39 39 H 0.96997 * 119.99849 * 0.02562 * 13 11 10 40 40 H 0.97001 * 119.99646 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5803 1.1974 -0.0048 5 6 4.2716 0.0001 -0.0057 6 6 3.5806 -1.1969 -0.0012 7 6 2.1981 -1.1969 0.0043 8 6 1.4446 -2.5021 0.0097 9 8 2.3733 -3.5882 0.0071 10 6 1.7586 -4.8783 0.0112 11 6 2.8254 -5.9428 0.0074 12 8 3.9965 -5.6277 0.0022 13 7 2.4779 -7.2450 0.0097 14 6 3.5148 -8.2799 0.0066 15 1 4.3689 -7.9402 0.5925 16 6 2.9630 -9.5457 0.6102 17 1 1.9422 -9.5762 0.9615 18 6 3.7619 -10.6646 0.7150 19 7 5.0051 -10.6274 0.2877 20 14 3.0781 -12.2334 1.4639 21 1 4.1292 -13.2825 1.4606 22 1 2.6469 -11.9685 2.8599 23 1 1.9146 -12.6967 0.6659 24 6 3.9591 -8.5523 -1.4319 25 9 2.8629 -8.9882 -2.1839 26 9 4.4713 -7.3772 -1.9922 27 9 4.9489 -9.5410 -1.4350 28 1 -0.3634 0.0037 1.0276 29 1 -0.3634 0.8881 -0.5172 30 1 -0.3634 -0.8919 -0.5106 31 1 1.6582 2.1327 0.0011 32 1 4.1203 2.1327 -0.0074 33 1 5.3517 0.0000 -0.0098 34 1 4.1206 -2.1322 -0.0015 35 1 0.8140 -2.5611 -0.8775 36 1 0.8219 -2.5585 0.9025 37 1 1.1349 -4.9863 -0.8761 38 1 1.1422 -4.9843 0.9038 39 1 1.5412 -7.4970 0.0135 40 1 5.5672 -11.4145 0.3618 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928799865.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:00:52 Heat of formation + Delta-G solvation = -216.236780 kcal Electronic energy + Delta-G solvation = -28369.471042 eV Core-core repulsion = 23734.114043 eV Total energy + Delta-G solvation = -4635.356999 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.118 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -50.43631 -48.07225 -47.74442 -40.84574 -40.36970 -38.38356 -36.46658 -34.49125 -33.95471 -32.61963 -30.98717 -28.71604 -27.69450 -26.66562 -26.48160 -23.53973 -22.75505 -21.83767 -21.51678 -19.45284 -18.90840 -18.69439 -18.40726 -17.97105 -17.48700 -17.26457 -17.00191 -16.79096 -16.09119 -15.81597 -15.59098 -15.37063 -15.04205 -14.99080 -14.63797 -14.50307 -14.48133 -14.31485 -14.16738 -14.03688 -13.92403 -13.85052 -13.36320 -13.08635 -13.04500 -12.89841 -12.80001 -12.70890 -12.60116 -12.22549 -11.87280 -11.68982 -11.61462 -10.85350 -10.80555 -10.68232 -10.09444 -9.67301 -9.45356 -8.21574 -6.53151 0.41218 0.49543 1.47168 1.49325 1.58101 1.61523 1.84132 2.36901 2.50535 2.83848 2.93194 2.97941 3.65760 3.79308 3.85994 3.93134 3.99978 4.10595 4.16065 4.23008 4.25435 4.30885 4.36404 4.48784 4.53235 4.69280 4.88594 4.89148 4.90901 4.99181 5.16726 5.33603 5.37862 5.51356 5.55555 5.63840 5.64191 5.68610 6.10358 6.18020 6.51760 6.72078 7.16414 7.35133 8.71094 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.023756 B = 0.002553 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.383357 B =10966.552843 C =11345.332282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.086 4.086 3 C -0.126 4.126 4 C -0.122 4.122 5 C -0.143 4.143 6 C -0.120 4.120 7 C -0.108 4.108 8 C 0.100 3.900 9 O -0.393 6.393 10 C 0.057 3.943 11 C 0.496 3.504 12 O -0.571 6.571 13 N -0.702 5.702 14 C 0.253 3.747 15 H 0.044 0.956 16 C -0.562 4.562 17 H 0.097 0.903 18 C 0.013 3.987 19 N -0.876 5.876 20 Si 0.985 3.015 21 H -0.287 1.287 22 H -0.261 1.261 23 H -0.264 1.264 24 C 0.413 3.587 25 F -0.201 7.201 26 F -0.221 7.221 27 F -0.151 7.151 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.074 0.926 31 H 0.150 0.850 32 H 0.144 0.856 33 H 0.126 0.874 34 H 0.105 0.895 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.112 0.888 38 H 0.118 0.882 39 H 0.418 0.582 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.012 18.143 0.414 22.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.087 4.087 3 C -0.144 4.144 4 C -0.140 4.140 5 C -0.161 4.161 6 C -0.138 4.138 7 C -0.108 4.108 8 C 0.024 3.976 9 O -0.313 6.313 10 C -0.022 4.022 11 C 0.283 3.717 12 O -0.449 6.449 13 N -0.355 5.355 14 C 0.146 3.854 15 H 0.062 0.938 16 C -0.598 4.598 17 H 0.115 0.885 18 C -0.192 4.192 19 N -0.510 5.510 20 Si 0.808 3.192 21 H -0.212 1.212 22 H -0.186 1.186 23 H -0.188 1.188 24 C 0.356 3.644 25 F -0.183 7.183 26 F -0.203 7.203 27 F -0.132 7.132 28 H 0.101 0.899 29 H 0.101 0.899 30 H 0.093 0.907 31 H 0.168 0.832 32 H 0.162 0.838 33 H 0.144 0.856 34 H 0.123 0.877 35 H 0.103 0.897 36 H 0.105 0.895 37 H 0.130 0.870 38 H 0.135 0.865 39 H 0.255 0.745 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -11.790 18.298 0.357 21.770 hybrid contribution 0.201 -1.277 -0.194 1.307 sum -11.588 17.022 0.163 20.592 Atomic orbital electron populations 1.20905 0.88825 1.04082 1.03476 1.19969 0.97658 0.91620 0.99411 1.21344 0.94248 0.98171 1.00634 1.21459 0.94976 0.98192 0.99347 1.21372 1.00627 0.92732 1.01341 1.21103 0.94886 0.98366 0.99443 1.19767 0.93883 0.94424 1.02693 1.21487 0.90565 0.82889 1.02613 1.87971 1.33991 1.13437 1.95852 1.22249 0.92665 0.81595 1.05723 1.21275 0.90646 0.84161 0.75568 1.90705 1.21893 1.82472 1.49812 1.45787 1.10951 1.04399 1.74347 1.19295 0.90402 0.89226 0.86494 0.93826 1.21223 1.00707 0.94466 1.43432 0.88510 1.26051 0.95152 1.03122 0.94923 1.70538 1.07756 1.31289 1.41460 0.85183 0.77963 0.76840 0.79181 1.21240 1.18583 1.18845 1.23338 0.75374 0.73426 0.92234 1.92985 1.55444 1.90191 1.79680 1.93068 1.88199 1.50625 1.88389 1.93376 1.62516 1.61073 1.96273 0.89860 0.89869 0.90714 0.83217 0.83781 0.85603 0.87672 0.89694 0.89522 0.87036 0.86456 0.74483 0.92183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.27 9.60 71.24 0.68 -0.58 16 2 C -0.09 -1.58 5.88 -19.87 -0.12 -1.70 16 3 C -0.13 -2.12 9.70 22.27 0.22 -1.91 16 4 C -0.12 -2.29 10.05 22.27 0.22 -2.06 16 5 C -0.14 -3.43 10.05 22.27 0.22 -3.20 16 6 C -0.12 -3.43 9.38 22.27 0.21 -3.22 16 7 C -0.11 -2.57 5.88 -19.87 -0.12 -2.69 16 8 C 0.10 2.08 5.05 71.24 0.36 2.44 16 9 O -0.39 -11.84 8.36 -129.94 -1.09 -12.92 16 10 C 0.06 1.45 6.42 71.24 0.46 1.91 16 11 C 0.50 19.38 7.44 87.66 0.65 20.04 16 12 O -0.57 -28.76 15.07 16.00 0.24 -28.52 16 13 N -0.70 -27.42 4.98 -446.09 -2.22 -29.64 16 14 C 0.25 12.67 2.21 44.24 0.10 12.76 16 15 H 0.04 2.56 7.58 -2.38 -0.02 2.54 16 16 C -0.56 -27.92 8.46 25.60 0.22 -27.71 16 17 H 0.10 4.32 7.74 -2.91 -0.02 4.30 16 18 C 0.01 0.65 5.20 84.66 0.44 1.09 16 19 N -0.88 -48.86 9.50 21.45 0.20 -48.65 16 20 Si 0.99 40.03 29.54 68.60 2.03 42.06 16 21 H -0.29 -11.72 7.11 99.48 0.71 -11.02 16 22 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 23 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 24 C 0.41 21.55 2.81 71.98 0.20 21.75 16 25 F -0.20 -9.77 16.94 44.97 0.76 -9.01 16 26 F -0.22 -11.69 15.68 44.97 0.70 -10.98 16 27 F -0.15 -8.63 12.91 44.97 0.58 -8.05 16 28 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.08 0.66 8.09 -2.38 -0.02 0.64 16 30 H 0.07 0.71 6.63 -2.39 -0.02 0.70 16 31 H 0.15 1.58 8.06 -2.91 -0.02 1.56 16 32 H 0.14 1.89 8.06 -2.91 -0.02 1.87 16 33 H 0.13 2.72 8.06 -2.91 -0.02 2.69 16 34 H 0.11 3.65 7.01 -2.91 -0.02 3.63 16 35 H 0.09 1.37 7.48 -2.38 -0.02 1.36 16 36 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 38 H 0.12 2.11 8.14 -2.39 -0.02 2.10 16 39 H 0.42 12.83 8.54 -92.71 -0.79 12.04 16 40 H 0.27 14.23 8.31 -92.71 -0.77 13.46 16 Total: -1.00 -72.94 350.54 5.25 -67.68 By element: Atomic # 1 Polarization: 20.80 SS G_CDS: 0.30 Total: 21.10 kcal Atomic # 6 Polarization: 13.19 SS G_CDS: 3.75 Total: 16.94 kcal Atomic # 7 Polarization: -76.27 SS G_CDS: -2.02 Total: -78.29 kcal Atomic # 8 Polarization: -40.60 SS G_CDS: -0.84 Total: -41.45 kcal Atomic # 9 Polarization: -30.09 SS G_CDS: 2.05 Total: -28.04 kcal Atomic # 14 Polarization: 40.03 SS G_CDS: 2.03 Total: 42.06 kcal Total: -72.94 5.25 -67.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928799865.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -148.552 kcal (2) G-P(sol) polarization free energy of solvation -72.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -221.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -216.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds