Wall clock time and date at job start Tue Mar 31 2020 16:24:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42904 * 109.46502 * 2 1 4 4 C 1.52997 * 109.47328 * 120.00082 * 2 1 3 5 5 C 1.50701 * 109.47212 * 305.00040 * 4 2 1 6 6 C 1.38233 * 120.00099 * 269.72808 * 5 4 2 7 7 C 1.38239 * 119.99655 * 179.76882 * 6 5 4 8 8 C 1.38230 * 120.00228 * 0.50243 * 7 6 5 9 9 C 1.38238 * 119.99995 * 359.75228 * 8 7 6 10 10 C 1.38238 * 120.00072 * 359.97438 * 9 8 7 11 11 C 1.50699 * 109.46984 * 240.00386 * 2 1 3 12 12 O 1.21275 * 119.99805 * 264.99801 * 11 2 1 13 13 N 1.34781 * 119.99989 * 84.99543 * 11 2 1 14 14 C 1.46494 * 119.99956 * 179.97438 * 13 11 2 15 15 H 1.09005 * 109.47671 * 325.00708 * 14 13 11 16 16 C 1.50697 * 109.47521 * 205.00029 * 14 13 11 17 17 H 1.08001 * 119.99911 * 0.02562 * 16 14 13 18 18 C 1.37873 * 120.00320 * 180.02562 * 16 14 13 19 19 N 1.31520 * 119.99745 * 0.02562 * 18 16 14 20 20 Si 1.86803 * 120.00211 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47378 * 89.99836 * 20 18 16 22 22 H 1.48501 * 109.47267 * 210.00342 * 20 18 16 23 23 H 1.48500 * 109.46903 * 330.00171 * 20 18 16 24 24 C 1.53000 * 109.46826 * 85.00278 * 14 13 11 25 25 F 1.39903 * 109.47159 * 60.00076 * 24 14 13 26 26 F 1.39903 * 109.47381 * 179.97438 * 24 14 13 27 27 F 1.39903 * 109.47334 * 300.00000 * 24 14 13 28 28 H 1.09003 * 109.47390 * 299.99285 * 1 2 3 29 29 H 1.09004 * 109.47759 * 59.99803 * 1 2 3 30 30 H 1.09002 * 109.46786 * 179.97438 * 1 2 3 31 31 H 0.96708 * 113.99258 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.47153 * 185.00042 * 4 2 1 33 33 H 1.09001 * 109.46832 * 65.00233 * 4 2 1 34 34 H 1.08003 * 119.99927 * 359.97438 * 6 5 4 35 35 H 1.08000 * 119.99431 * 180.23215 * 7 6 5 36 36 H 1.07997 * 120.00220 * 179.73036 * 8 7 6 37 37 H 1.08002 * 119.99952 * 179.97438 * 9 8 7 38 38 H 1.07991 * 120.00062 * 179.97438 * 10 9 8 39 39 H 0.96996 * 119.99918 * 0.02562 * 13 11 2 40 40 H 0.97009 * 119.99445 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.4392 -0.0860 2.4766 6 6 2.0909 0.9598 3.1030 7 6 1.5373 1.5456 4.2261 8 6 0.3372 1.0788 4.7288 9 6 -0.3119 0.0296 4.1054 10 6 0.2388 -0.5526 2.9790 11 6 2.0323 -0.7103 -1.2305 12 8 2.3207 -1.8870 -1.1761 13 7 2.1609 -0.0379 -2.3915 14 6 2.6497 -0.7283 -3.5875 15 1 3.3939 -1.4710 -3.2998 16 6 3.2751 0.2723 -4.5249 17 1 3.3057 1.3180 -4.2564 18 6 3.8081 -0.1470 -5.7253 19 7 3.7703 -1.4203 -6.0525 20 14 4.5838 1.0933 -6.8870 21 1 6.0297 1.2261 -6.5756 22 1 4.4197 0.6293 -8.2880 23 1 3.9187 2.4106 -6.7206 24 6 1.4808 -1.4228 -4.2890 25 9 0.5257 -0.4696 -4.6583 26 9 1.9474 -2.0817 -5.4315 27 9 0.9002 -2.3518 -3.4188 28 1 -0.3634 0.5137 0.8901 29 1 -0.3635 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 2.9703 1.4237 -0.0004 32 1 3.1264 -0.6443 1.2951 33 1 1.7517 -1.7715 1.2055 34 1 3.0310 1.3213 2.7131 35 1 2.0447 2.3651 4.7133 36 1 -0.0931 1.5337 5.6087 37 1 -1.2494 -0.3354 4.4984 38 1 -0.2681 -1.3725 2.4923 39 1 1.9305 0.9033 -2.4349 40 1 4.1456 -1.7153 -6.8970 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928806013.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:24:51 Heat of formation + Delta-G solvation = -204.299902 kcal Electronic energy + Delta-G solvation = -29614.420756 eV Core-core repulsion = 24979.581379 eV Total energy + Delta-G solvation = -4634.839377 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.118 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -48.38535 -46.04122 -45.64763 -40.22799 -38.95362 -36.73915 -34.81466 -33.15513 -32.52914 -31.04132 -30.35436 -28.37800 -26.92624 -24.64675 -23.60430 -22.57907 -21.65077 -20.70361 -19.71996 -18.33705 -17.01950 -16.91055 -16.66041 -16.62889 -16.09227 -15.55979 -15.29807 -15.09711 -15.02647 -14.68653 -14.56030 -13.61071 -13.46182 -13.21047 -12.99281 -12.91257 -12.74461 -12.51354 -12.43413 -12.37390 -12.31171 -12.04724 -12.01886 -11.87568 -11.79621 -11.62180 -11.23295 -11.08000 -10.99979 -10.87627 -10.82646 -10.66013 -10.42746 -9.71115 -9.08898 -8.95727 -8.76120 -8.66258 -8.32474 -6.27463 -4.51692 1.28129 1.34470 3.01360 3.16252 3.23010 3.25887 3.54831 3.81053 4.16739 4.21385 4.51495 4.68446 4.77215 4.89270 4.92024 4.93185 5.04469 5.06986 5.21487 5.42348 5.45790 5.68695 5.77090 5.80958 5.81247 5.83912 5.89338 5.99981 6.06850 6.18166 6.20218 6.39273 6.43488 6.59763 6.86083 6.93944 7.09584 7.39720 7.54229 7.59135 8.26365 8.45425 8.77965 9.16403 10.64044 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.022229 B = 0.003336 C = 0.003088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.299615 B = 8390.155482 C = 9064.042646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.129 3.871 3 O -0.546 6.546 4 C -0.097 4.097 5 C -0.067 4.067 6 C -0.104 4.104 7 C -0.121 4.121 8 C -0.128 4.128 9 C -0.122 4.122 10 C -0.115 4.115 11 C 0.481 3.519 12 O -0.532 6.532 13 N -0.700 5.700 14 C 0.243 3.757 15 H 0.084 0.916 16 C -0.552 4.552 17 H 0.078 0.922 18 C 0.065 3.935 19 N -0.840 5.840 20 Si 0.916 3.084 21 H -0.276 1.276 22 H -0.282 1.282 23 H -0.270 1.270 24 C 0.417 3.583 25 F -0.209 7.209 26 F -0.136 7.136 27 F -0.218 7.218 28 H 0.076 0.924 29 H 0.068 0.932 30 H 0.075 0.925 31 H 0.380 0.620 32 H 0.079 0.921 33 H 0.096 0.904 34 H 0.120 0.880 35 H 0.119 0.881 36 H 0.117 0.883 37 H 0.119 0.881 38 H 0.122 0.878 39 H 0.404 0.596 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.520 4.762 15.747 17.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.085 3.915 3 O -0.352 6.352 4 C -0.135 4.135 5 C -0.067 4.067 6 C -0.122 4.122 7 C -0.139 4.139 8 C -0.146 4.146 9 C -0.140 4.140 10 C -0.133 4.133 11 C 0.265 3.735 12 O -0.409 6.409 13 N -0.350 5.350 14 C 0.137 3.863 15 H 0.102 0.898 16 C -0.589 4.589 17 H 0.096 0.904 18 C -0.144 4.144 19 N -0.473 5.473 20 Si 0.742 3.258 21 H -0.202 1.202 22 H -0.208 1.208 23 H -0.195 1.195 24 C 0.360 3.640 25 F -0.191 7.191 26 F -0.117 7.117 27 F -0.200 7.200 28 H 0.095 0.905 29 H 0.087 0.913 30 H 0.094 0.906 31 H 0.227 0.773 32 H 0.097 0.903 33 H 0.114 0.886 34 H 0.138 0.862 35 H 0.137 0.863 36 H 0.135 0.865 37 H 0.137 0.863 38 H 0.140 0.860 39 H 0.239 0.761 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.914 3.868 15.586 16.794 hybrid contribution 0.582 0.729 -0.894 1.292 sum -4.332 4.596 14.692 15.992 Atomic orbital electron populations 1.21814 0.90807 1.03149 1.03793 1.21329 0.96597 0.82274 0.91330 1.86570 1.27067 1.24685 1.96843 1.21116 1.00818 1.00897 0.90625 1.19716 0.95004 0.96115 0.95848 1.21021 1.00046 0.95710 0.95467 1.21114 0.96136 0.99934 0.96744 1.21102 0.95872 0.97476 1.00172 1.21109 0.99932 0.96856 0.96135 1.21117 0.95534 1.00286 0.96398 1.21251 0.78757 0.87919 0.85616 1.90709 1.49321 1.15641 1.85263 1.46084 1.65264 1.14398 1.09206 1.19755 0.88938 0.95228 0.82342 0.89811 1.20880 1.40868 0.94030 1.03151 0.90378 1.25093 0.95406 0.96071 0.97857 1.70407 1.39385 1.14044 1.23438 0.86203 0.79408 0.80747 0.79445 1.20176 1.20786 1.19454 1.23140 0.84570 0.76943 0.79299 1.92994 1.67997 1.65567 1.92500 1.93409 1.86518 1.81587 1.50235 1.93065 1.87079 1.69021 1.70859 0.90493 0.91317 0.90609 0.77269 0.90253 0.88553 0.86188 0.86329 0.86481 0.86288 0.86006 0.76055 0.92092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 8.06 37.16 0.30 -1.56 16 2 C 0.13 1.82 1.01 -91.77 -0.09 1.73 16 3 O -0.55 -6.93 11.80 -35.23 -0.42 -7.35 16 4 C -0.10 -1.23 4.28 -27.88 -0.12 -1.35 16 5 C -0.07 -0.77 4.24 -104.62 -0.44 -1.21 16 6 C -0.10 -1.11 9.41 -39.58 -0.37 -1.48 16 7 C -0.12 -1.18 10.05 -39.58 -0.40 -1.58 16 8 C -0.13 -1.20 10.05 -39.58 -0.40 -1.60 16 9 C -0.12 -1.19 10.05 -39.58 -0.40 -1.58 16 10 C -0.12 -1.25 7.85 -39.58 -0.31 -1.56 16 11 C 0.48 8.98 6.23 -10.98 -0.07 8.91 16 12 O -0.53 -11.79 14.56 5.56 0.08 -11.71 16 13 N -0.70 -13.94 4.90 -54.94 -0.27 -14.21 16 14 C 0.24 5.92 2.21 -69.09 -0.15 5.77 16 15 H 0.08 2.28 7.58 -51.93 -0.39 1.88 16 16 C -0.55 -13.88 8.46 -34.44 -0.29 -14.17 16 17 H 0.08 1.86 7.74 -52.49 -0.41 1.45 16 18 C 0.06 1.66 5.20 -17.82 -0.09 1.57 16 19 N -0.84 -22.78 9.50 55.43 0.53 -22.26 16 20 Si 0.92 19.89 29.54 -169.99 -5.02 14.86 16 21 H -0.28 -5.90 7.11 56.52 0.40 -5.49 16 22 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 23 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 24 C 0.42 10.61 2.81 37.16 0.10 10.71 16 25 F -0.21 -5.15 16.94 2.25 0.04 -5.11 16 26 F -0.14 -3.76 12.91 2.25 0.03 -3.73 16 27 F -0.22 -5.48 15.68 2.25 0.04 -5.44 16 28 H 0.08 0.95 6.14 -51.93 -0.32 0.63 16 29 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 30 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.38 3.81 9.04 45.56 0.41 4.22 16 32 H 0.08 0.96 8.08 -51.93 -0.42 0.54 16 33 H 0.10 1.32 7.63 -51.93 -0.40 0.93 16 34 H 0.12 1.12 8.06 -52.48 -0.42 0.70 16 35 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 36 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 37 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 38 H 0.12 1.21 8.03 -52.49 -0.42 0.79 16 39 H 0.40 7.31 7.97 -40.82 -0.33 6.98 16 40 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 346.07 15.07 5.22 5.22 Total: -1.00 -30.09 346.07 -6.45 -36.54 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: -3.94 Total: 10.59 kcal Atomic # 6 Polarization: 5.33 SS G_CDS: -2.73 Total: 2.59 kcal Atomic # 7 Polarization: -36.73 SS G_CDS: 0.26 Total: -36.47 kcal Atomic # 8 Polarization: -18.72 SS G_CDS: -0.33 Total: -19.05 kcal Atomic # 9 Polarization: -14.38 SS G_CDS: 0.10 Total: -14.28 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.02 Total: 14.86 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.09 -6.45 -36.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928806013.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -167.757 kcal (2) G-P(sol) polarization free energy of solvation -30.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -204.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds