Wall clock time and date at job start Tue Mar 31 2020 16:24:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42904 * 109.46502 * 2 1 4 4 C 1.52997 * 109.47328 * 120.00082 * 2 1 3 5 5 C 1.50701 * 109.47212 * 305.00040 * 4 2 1 6 6 C 1.38233 * 120.00099 * 269.72808 * 5 4 2 7 7 C 1.38239 * 119.99655 * 179.76882 * 6 5 4 8 8 C 1.38230 * 120.00228 * 0.50243 * 7 6 5 9 9 C 1.38238 * 119.99995 * 359.75228 * 8 7 6 10 10 C 1.38238 * 120.00072 * 359.97438 * 9 8 7 11 11 C 1.50699 * 109.46984 * 240.00386 * 2 1 3 12 12 O 1.21275 * 119.99805 * 264.99801 * 11 2 1 13 13 N 1.34781 * 119.99989 * 84.99543 * 11 2 1 14 14 C 1.46494 * 119.99956 * 179.97438 * 13 11 2 15 15 H 1.09005 * 109.47671 * 325.00708 * 14 13 11 16 16 C 1.50697 * 109.47521 * 205.00029 * 14 13 11 17 17 H 1.08001 * 119.99911 * 0.02562 * 16 14 13 18 18 C 1.37873 * 120.00320 * 180.02562 * 16 14 13 19 19 N 1.31520 * 119.99745 * 0.02562 * 18 16 14 20 20 Si 1.86803 * 120.00211 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47378 * 89.99836 * 20 18 16 22 22 H 1.48501 * 109.47267 * 210.00342 * 20 18 16 23 23 H 1.48500 * 109.46903 * 330.00171 * 20 18 16 24 24 C 1.53000 * 109.46826 * 85.00278 * 14 13 11 25 25 F 1.39903 * 109.47159 * 60.00076 * 24 14 13 26 26 F 1.39903 * 109.47381 * 179.97438 * 24 14 13 27 27 F 1.39903 * 109.47334 * 300.00000 * 24 14 13 28 28 H 1.09003 * 109.47390 * 299.99285 * 1 2 3 29 29 H 1.09004 * 109.47759 * 59.99803 * 1 2 3 30 30 H 1.09002 * 109.46786 * 179.97438 * 1 2 3 31 31 H 0.96708 * 113.99258 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.47153 * 185.00042 * 4 2 1 33 33 H 1.09001 * 109.46832 * 65.00233 * 4 2 1 34 34 H 1.08003 * 119.99927 * 359.97438 * 6 5 4 35 35 H 1.08000 * 119.99431 * 180.23215 * 7 6 5 36 36 H 1.07997 * 120.00220 * 179.73036 * 8 7 6 37 37 H 1.08002 * 119.99952 * 179.97438 * 9 8 7 38 38 H 1.07991 * 120.00062 * 179.97438 * 10 9 8 39 39 H 0.96996 * 119.99918 * 0.02562 * 13 11 2 40 40 H 0.97009 * 119.99445 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.4392 -0.0860 2.4766 6 6 2.0909 0.9598 3.1030 7 6 1.5373 1.5456 4.2261 8 6 0.3372 1.0788 4.7288 9 6 -0.3119 0.0296 4.1054 10 6 0.2388 -0.5526 2.9790 11 6 2.0323 -0.7103 -1.2305 12 8 2.3207 -1.8870 -1.1761 13 7 2.1609 -0.0379 -2.3915 14 6 2.6497 -0.7283 -3.5875 15 1 3.3939 -1.4710 -3.2998 16 6 3.2751 0.2723 -4.5249 17 1 3.3057 1.3180 -4.2564 18 6 3.8081 -0.1470 -5.7253 19 7 3.7703 -1.4203 -6.0525 20 14 4.5838 1.0933 -6.8870 21 1 6.0297 1.2261 -6.5756 22 1 4.4197 0.6293 -8.2880 23 1 3.9187 2.4106 -6.7206 24 6 1.4808 -1.4228 -4.2890 25 9 0.5257 -0.4696 -4.6583 26 9 1.9474 -2.0817 -5.4315 27 9 0.9002 -2.3518 -3.4188 28 1 -0.3634 0.5137 0.8901 29 1 -0.3635 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 2.9703 1.4237 -0.0004 32 1 3.1264 -0.6443 1.2951 33 1 1.7517 -1.7715 1.2055 34 1 3.0310 1.3213 2.7131 35 1 2.0447 2.3651 4.7133 36 1 -0.0931 1.5337 5.6087 37 1 -1.2494 -0.3354 4.4984 38 1 -0.2681 -1.3725 2.4923 39 1 1.9305 0.9033 -2.4349 40 1 4.1456 -1.7153 -6.8970 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928806013.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:24:50 Heat of formation + Delta-G solvation = -223.776386 kcal Electronic energy + Delta-G solvation = -29615.265320 eV Core-core repulsion = 24979.581379 eV Total energy + Delta-G solvation = -4635.683941 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.118 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -50.44682 -48.08390 -47.75475 -41.47925 -39.98126 -37.94660 -36.59159 -34.51019 -34.01705 -31.83418 -31.39564 -30.13546 -27.90087 -26.63711 -24.99723 -23.35547 -23.12856 -21.93272 -21.12646 -19.81532 -18.89965 -18.81692 -18.61687 -17.90944 -17.33440 -16.96308 -16.66661 -16.48330 -16.29249 -15.85528 -15.74078 -15.13350 -15.00547 -14.71365 -14.52968 -14.48536 -14.32126 -14.19713 -14.05980 -13.91473 -13.82459 -13.62657 -13.45152 -13.11574 -13.03581 -12.94089 -12.78055 -12.64891 -12.62418 -12.22633 -11.90791 -11.76477 -11.75000 -11.59725 -10.69764 -10.51675 -10.10604 -9.71162 -9.50252 -8.23141 -6.54107 0.50045 0.59671 1.44800 1.46325 1.50870 1.58523 2.09720 2.37255 2.50154 2.92110 2.96001 3.13237 3.48188 3.74153 3.79536 3.87616 3.88879 4.03574 4.14057 4.20291 4.25240 4.38100 4.52015 4.71548 4.71818 4.77079 4.86672 4.88617 4.94084 5.10946 5.21220 5.26288 5.37362 5.51022 5.62927 5.65507 5.70841 5.79564 6.20367 6.46435 6.50843 6.75046 7.14006 7.27121 8.69372 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.022229 B = 0.003336 C = 0.003088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.299615 B = 8390.155482 C = 9064.042646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.146 3.854 3 O -0.542 6.542 4 C -0.089 4.089 5 C -0.081 4.081 6 C -0.114 4.114 7 C -0.127 4.127 8 C -0.130 4.130 9 C -0.128 4.128 10 C -0.128 4.128 11 C 0.478 3.522 12 O -0.569 6.569 13 N -0.695 5.695 14 C 0.250 3.750 15 H 0.049 0.951 16 C -0.561 4.561 17 H 0.092 0.908 18 C 0.015 3.985 19 N -0.874 5.874 20 Si 0.982 3.018 21 H -0.269 1.269 22 H -0.285 1.285 23 H -0.259 1.259 24 C 0.412 3.588 25 F -0.204 7.204 26 F -0.150 7.150 27 F -0.219 7.219 28 H 0.092 0.908 29 H 0.062 0.938 30 H 0.073 0.927 31 H 0.392 0.608 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.129 0.871 35 H 0.139 0.861 36 H 0.141 0.859 37 H 0.139 0.861 38 H 0.124 0.876 39 H 0.415 0.585 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.791 6.990 17.133 19.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.102 3.898 3 O -0.350 6.350 4 C -0.127 4.127 5 C -0.081 4.081 6 C -0.132 4.132 7 C -0.145 4.145 8 C -0.148 4.148 9 C -0.146 4.146 10 C -0.146 4.146 11 C 0.264 3.736 12 O -0.448 6.448 13 N -0.346 5.346 14 C 0.143 3.857 15 H 0.067 0.933 16 C -0.598 4.598 17 H 0.110 0.890 18 C -0.190 4.190 19 N -0.508 5.508 20 Si 0.806 3.194 21 H -0.194 1.194 22 H -0.211 1.211 23 H -0.183 1.183 24 C 0.356 3.644 25 F -0.185 7.185 26 F -0.132 7.132 27 F -0.201 7.201 28 H 0.111 0.889 29 H 0.081 0.919 30 H 0.092 0.908 31 H 0.242 0.758 32 H 0.100 0.900 33 H 0.099 0.901 34 H 0.147 0.853 35 H 0.157 0.843 36 H 0.159 0.841 37 H 0.156 0.844 38 H 0.142 0.858 39 H 0.252 0.748 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.189 6.129 17.003 18.804 hybrid contribution 0.640 0.014 -1.245 1.400 sum -4.549 6.143 15.757 17.514 Atomic orbital electron populations 1.21823 0.90102 1.03227 1.04215 1.21137 0.96896 0.82522 0.89284 1.86560 1.28436 1.23369 1.96598 1.21002 1.01068 0.99959 0.90681 1.19621 0.95694 0.97016 0.95731 1.21212 1.00511 0.95576 0.95931 1.21421 0.96384 1.00328 0.96395 1.21460 0.95632 0.97047 1.00646 1.21392 1.00691 0.96823 0.95654 1.21262 0.95559 1.00669 0.97119 1.22188 0.77419 0.87614 0.86343 1.90689 1.50696 1.17567 1.85894 1.45965 1.65347 1.14761 1.08481 1.19356 0.87929 0.94650 0.83768 0.93325 1.21217 1.40614 0.94661 1.03295 0.89032 1.25996 0.95740 0.97733 0.99538 1.70535 1.40443 1.15954 1.23885 0.85168 0.78749 0.78617 0.76875 1.19369 1.21101 1.18330 1.23345 0.85024 0.76986 0.79028 1.92990 1.67804 1.65277 1.92473 1.93380 1.86764 1.81935 1.51087 1.93058 1.87110 1.69142 1.70771 0.88902 0.91938 0.90809 0.75770 0.89977 0.90050 0.85275 0.84299 0.84148 0.84360 0.85834 0.74805 0.92158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.54 8.06 71.98 0.58 -2.96 16 2 C 0.15 4.01 1.01 -11.54 -0.01 4.00 16 3 O -0.54 -12.82 11.80 -148.98 -1.76 -14.58 16 4 C -0.09 -2.23 4.28 29.85 0.13 -2.10 16 5 C -0.08 -1.75 4.24 -19.86 -0.08 -1.83 16 6 C -0.11 -2.21 9.41 22.27 0.21 -2.00 16 7 C -0.13 -2.13 10.05 22.27 0.22 -1.91 16 8 C -0.13 -2.06 10.05 22.27 0.22 -1.83 16 9 C -0.13 -2.18 10.05 22.27 0.22 -1.96 16 10 C -0.13 -2.59 7.85 22.27 0.17 -2.41 16 11 C 0.48 17.96 6.23 87.66 0.55 18.50 16 12 O -0.57 -25.89 14.56 -3.02 -0.04 -25.93 16 13 N -0.69 -27.68 4.90 -446.11 -2.18 -29.86 16 14 C 0.25 12.39 2.21 44.25 0.10 12.49 16 15 H 0.05 2.76 7.58 -2.38 -0.02 2.75 16 16 C -0.56 -28.05 8.46 25.60 0.22 -27.83 16 17 H 0.09 4.23 7.74 -2.91 -0.02 4.20 16 18 C 0.02 0.78 5.20 84.65 0.44 1.22 16 19 N -0.87 -48.15 9.50 21.45 0.20 -47.95 16 20 Si 0.98 40.19 29.54 68.60 2.03 42.22 16 21 H -0.27 -10.59 7.11 99.48 0.71 -9.89 16 22 H -0.29 -11.73 7.11 99.48 0.71 -11.02 16 23 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 24 C 0.41 21.34 2.81 71.98 0.20 21.55 16 25 F -0.20 -10.03 16.94 44.97 0.76 -9.27 16 26 F -0.15 -8.49 12.91 44.97 0.58 -7.91 16 27 F -0.22 -11.21 15.68 44.97 0.70 -10.50 16 28 H 0.09 2.13 6.14 -2.39 -0.01 2.12 16 29 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.39 7.14 9.04 -74.05 -0.67 6.47 16 32 H 0.08 1.96 8.08 -2.39 -0.02 1.94 16 33 H 0.08 2.27 7.63 -2.39 -0.02 2.25 16 34 H 0.13 2.15 8.06 -2.91 -0.02 2.13 16 35 H 0.14 1.69 8.06 -2.91 -0.02 1.67 16 36 H 0.14 1.51 8.06 -2.91 -0.02 1.49 16 37 H 0.14 1.74 8.06 -2.91 -0.02 1.72 16 38 H 0.12 2.36 8.03 -2.92 -0.02 2.33 16 39 H 0.41 14.63 7.97 -92.71 -0.74 13.89 16 40 H 0.27 14.04 8.31 -92.70 -0.77 13.27 16 Total: -1.00 -64.52 346.07 3.15 -61.36 By element: Atomic # 1 Polarization: 29.81 SS G_CDS: -0.31 Total: 29.50 kcal Atomic # 6 Polarization: 9.75 SS G_CDS: 3.17 Total: 12.92 kcal Atomic # 7 Polarization: -75.83 SS G_CDS: -1.98 Total: -77.81 kcal Atomic # 8 Polarization: -38.71 SS G_CDS: -1.80 Total: -40.51 kcal Atomic # 9 Polarization: -29.73 SS G_CDS: 2.05 Total: -27.68 kcal Atomic # 14 Polarization: 40.19 SS G_CDS: 2.03 Total: 42.22 kcal Total: -64.52 3.15 -61.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928806013.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -162.416 kcal (2) G-P(sol) polarization free energy of solvation -64.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -226.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -223.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds