Wall clock time and date at job start Tue Mar 31 2020 16:24:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42896 * 109.47217 * 2 1 4 4 C 1.52996 * 109.46891 * 120.00085 * 2 1 3 5 5 C 1.50703 * 109.46970 * 304.99677 * 4 2 1 6 6 C 1.38238 * 119.99786 * 269.72682 * 5 4 2 7 7 C 1.38241 * 119.99649 * 179.76811 * 6 5 4 8 8 C 1.38231 * 119.99836 * 0.50984 * 7 6 5 9 9 C 1.38237 * 120.00437 * 359.74361 * 8 7 6 10 10 C 1.38231 * 119.99837 * 90.00478 * 5 4 2 11 11 C 1.50701 * 109.46958 * 239.99681 * 2 1 3 12 12 O 1.21278 * 120.00071 * 265.00208 * 11 2 1 13 13 N 1.34777 * 119.99788 * 84.99983 * 11 2 1 14 14 C 1.46500 * 119.99995 * 179.97438 * 13 11 2 15 15 H 1.09001 * 109.46596 * 35.00583 * 14 13 11 16 16 C 1.50696 * 109.47188 * 155.00083 * 14 13 11 17 17 H 1.08003 * 120.00087 * 0.02562 * 16 14 13 18 18 C 1.37880 * 120.00316 * 179.97438 * 16 14 13 19 19 N 1.31515 * 119.99571 * 0.02562 * 18 16 14 20 20 Si 1.86800 * 120.00268 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.46870 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.46997 * 120.00180 * 20 18 16 23 23 H 1.48501 * 109.47364 * 240.00504 * 20 18 16 24 24 C 1.52997 * 109.47473 * 275.00486 * 14 13 11 25 25 F 1.39905 * 109.47157 * 59.99740 * 24 14 13 26 26 F 1.39900 * 109.47010 * 300.00131 * 24 14 13 27 27 F 1.39897 * 109.47422 * 179.97438 * 24 14 13 28 28 H 1.09001 * 109.47600 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47248 * 300.00604 * 1 2 3 30 30 H 1.09002 * 109.47097 * 60.00127 * 1 2 3 31 31 H 0.96698 * 113.99725 * 180.02562 * 3 2 1 32 32 H 1.08998 * 109.47611 * 64.99993 * 4 2 1 33 33 H 1.09001 * 109.47244 * 185.00135 * 4 2 1 34 34 H 1.07997 * 120.00294 * 359.97438 * 6 5 4 35 35 H 1.07992 * 119.99620 * 180.23140 * 7 6 5 36 36 H 1.08004 * 120.00358 * 179.72615 * 8 7 6 37 37 H 1.07999 * 120.00608 * 179.97438 * 9 8 7 38 38 H 1.08002 * 120.00674 * 359.97438 * 10 5 4 39 39 H 0.96995 * 120.00034 * 0.02562 * 13 11 2 40 40 H 0.97003 * 119.99476 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.4391 -0.0859 2.4765 6 6 2.0909 0.9599 3.1030 7 6 1.5373 1.5459 4.2260 8 6 0.3372 1.0792 4.7287 9 6 -0.3121 0.0300 4.1053 10 6 0.2389 -0.5526 2.9792 11 6 2.0323 -0.7105 -1.2304 12 8 2.3207 -1.8872 -1.1759 13 7 2.1610 -0.0382 -2.3914 14 6 2.6498 -0.7287 -3.5875 15 1 2.2867 -1.7564 -3.5874 16 6 2.1475 -0.0185 -4.8180 17 1 1.5266 0.8596 -4.7192 18 6 2.4814 -0.4892 -6.0703 19 7 3.2379 -1.5582 -6.1907 20 14 1.8593 0.3915 -7.5957 21 1 1.0342 1.5582 -7.1917 22 1 3.0146 0.8586 -8.4033 23 1 1.0349 -0.5420 -8.4046 24 6 4.1798 -0.7282 -3.5872 25 9 4.6461 -1.3875 -2.4447 26 9 4.6457 0.5909 -3.5871 27 9 4.6466 -1.3881 -4.7290 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 2.9703 1.4235 -0.0004 32 1 1.7516 -1.7715 1.2056 33 1 3.1263 -0.6444 1.2952 34 1 3.0310 1.3213 2.7131 35 1 2.0448 2.3653 4.7132 36 1 -0.0932 1.5340 5.6087 37 1 -1.2495 -0.3350 4.4983 38 1 -0.2684 -1.3723 2.4922 39 1 1.9307 0.9030 -2.4349 40 1 3.4725 -1.8896 -7.0717 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928806014.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:24:54 Heat of formation + Delta-G solvation = -204.386887 kcal Electronic energy + Delta-G solvation = -29637.932001 eV Core-core repulsion = 25003.088852 eV Total energy + Delta-G solvation = -4634.843149 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.118 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -48.41019 -46.06779 -45.66681 -40.22607 -38.95216 -36.73846 -34.81488 -33.15443 -32.52754 -31.03953 -30.35824 -28.38023 -26.92400 -24.64846 -23.61694 -22.57785 -21.64564 -20.70753 -19.72251 -18.33684 -17.03733 -16.92705 -16.69437 -16.60142 -16.07298 -15.57968 -15.30078 -15.08677 -15.07053 -14.67474 -14.56130 -13.53984 -13.47535 -13.21085 -12.98583 -12.95801 -12.77147 -12.53245 -12.46199 -12.38426 -12.33249 -12.07515 -11.99641 -11.88112 -11.80309 -11.61524 -11.23054 -11.07561 -10.99845 -10.91084 -10.85957 -10.61335 -10.42593 -9.68918 -9.08847 -8.95620 -8.76831 -8.65807 -8.32835 -6.27684 -4.51557 1.28366 1.34630 3.01756 3.15919 3.23434 3.26841 3.54833 3.80475 4.16429 4.21940 4.48983 4.69091 4.77448 4.88822 4.92173 4.93204 5.04486 5.07496 5.21473 5.42340 5.46073 5.68241 5.77518 5.80370 5.80867 5.82129 5.88839 6.00143 6.07446 6.15977 6.19718 6.39408 6.43660 6.60146 6.86158 6.94132 7.09521 7.40341 7.53443 7.59284 8.26336 8.45967 8.78015 9.16545 10.63975 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.023011 B = 0.003292 C = 0.003137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.505884 B = 8503.401523 C = 8922.717005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.128 3.872 3 O -0.546 6.546 4 C -0.097 4.097 5 C -0.067 4.067 6 C -0.104 4.104 7 C -0.121 4.121 8 C -0.128 4.128 9 C -0.122 4.122 10 C -0.115 4.115 11 C 0.481 3.519 12 O -0.533 6.533 13 N -0.700 5.700 14 C 0.242 3.758 15 H 0.085 0.915 16 C -0.551 4.551 17 H 0.079 0.921 18 C 0.064 3.936 19 N -0.840 5.840 20 Si 0.915 3.085 21 H -0.269 1.269 22 H -0.280 1.280 23 H -0.280 1.280 24 C 0.417 3.583 25 F -0.219 7.219 26 F -0.209 7.209 27 F -0.136 7.136 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.069 0.931 31 H 0.379 0.621 32 H 0.096 0.904 33 H 0.079 0.921 34 H 0.120 0.880 35 H 0.119 0.881 36 H 0.117 0.883 37 H 0.119 0.881 38 H 0.122 0.878 39 H 0.404 0.596 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.360 4.823 15.787 17.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.084 3.916 3 O -0.352 6.352 4 C -0.135 4.135 5 C -0.067 4.067 6 C -0.123 4.123 7 C -0.139 4.139 8 C -0.146 4.146 9 C -0.140 4.140 10 C -0.133 4.133 11 C 0.265 3.735 12 O -0.409 6.409 13 N -0.349 5.349 14 C 0.137 3.863 15 H 0.102 0.898 16 C -0.588 4.588 17 H 0.097 0.903 18 C -0.144 4.144 19 N -0.473 5.473 20 Si 0.742 3.258 21 H -0.193 1.193 22 H -0.205 1.205 23 H -0.205 1.205 24 C 0.361 3.639 25 F -0.201 7.201 26 F -0.191 7.191 27 F -0.117 7.117 28 H 0.094 0.906 29 H 0.095 0.905 30 H 0.088 0.912 31 H 0.227 0.773 32 H 0.115 0.885 33 H 0.097 0.903 34 H 0.138 0.862 35 H 0.137 0.863 36 H 0.135 0.865 37 H 0.137 0.863 38 H 0.140 0.860 39 H 0.239 0.761 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.661 3.955 15.654 16.805 hybrid contribution 0.649 0.736 -0.882 1.320 sum -4.012 4.691 14.771 16.009 Atomic orbital electron populations 1.21813 0.90737 1.03100 1.03865 1.21333 0.96614 0.82286 0.91341 1.86558 1.27065 1.24713 1.96839 1.21117 1.00880 1.00860 0.90625 1.19718 0.94997 0.96094 0.95851 1.21028 1.00042 0.95717 0.95465 1.21114 0.96132 0.99930 0.96729 1.21102 0.95869 0.97489 1.00169 1.21107 0.99929 0.96857 0.96148 1.21108 0.95527 1.00280 0.96418 1.21254 0.78712 0.88010 0.85567 1.90710 1.49388 1.15783 1.85055 1.46081 1.64953 1.14566 1.09344 1.19762 0.84409 0.98102 0.84040 0.89782 1.20925 1.34958 1.14485 0.88468 0.90339 1.25094 0.94123 0.95349 0.99865 1.70409 1.31329 1.21258 1.24306 0.86150 0.78709 0.79460 0.81492 1.19336 1.20542 1.20535 1.23156 0.95194 0.72388 0.73191 1.93063 1.91450 1.81849 1.53742 1.92992 1.91101 1.38572 1.96397 1.93409 1.90323 1.80260 1.47724 0.90628 0.90539 0.91178 0.77291 0.88550 0.90274 0.86208 0.86330 0.86481 0.86286 0.86005 0.76056 0.92146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 8.06 37.16 0.30 -1.48 16 2 C 0.13 1.81 1.01 -91.77 -0.09 1.72 16 3 O -0.55 -7.10 11.80 -35.23 -0.42 -7.52 16 4 C -0.10 -1.25 4.28 -27.88 -0.12 -1.37 16 5 C -0.07 -0.77 4.24 -104.62 -0.44 -1.22 16 6 C -0.10 -1.14 9.41 -39.58 -0.37 -1.51 16 7 C -0.12 -1.19 10.05 -39.58 -0.40 -1.59 16 8 C -0.13 -1.20 10.05 -39.58 -0.40 -1.60 16 9 C -0.12 -1.18 10.05 -39.58 -0.40 -1.58 16 10 C -0.12 -1.24 7.85 -39.58 -0.31 -1.55 16 11 C 0.48 8.98 6.23 -10.98 -0.07 8.91 16 12 O -0.53 -11.79 14.56 5.56 0.08 -11.71 16 13 N -0.70 -13.94 4.90 -54.93 -0.27 -14.21 16 14 C 0.24 5.91 2.21 -69.09 -0.15 5.76 16 15 H 0.08 2.30 7.58 -51.93 -0.39 1.91 16 16 C -0.55 -13.92 8.47 -34.44 -0.29 -14.22 16 17 H 0.08 1.89 7.74 -52.48 -0.41 1.49 16 18 C 0.06 1.66 5.20 -17.82 -0.09 1.57 16 19 N -0.84 -22.80 9.50 55.43 0.53 -22.27 16 20 Si 0.92 19.97 29.54 -169.99 -5.02 14.94 16 21 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 22 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 23 H -0.28 -6.05 7.11 56.52 0.40 -5.64 16 24 C 0.42 10.48 2.81 37.16 0.10 10.58 16 25 F -0.22 -5.40 15.68 2.25 0.04 -5.36 16 26 F -0.21 -5.03 16.94 2.25 0.04 -4.99 16 27 F -0.14 -3.73 12.91 2.25 0.03 -3.70 16 28 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.08 0.91 6.14 -51.93 -0.32 0.60 16 30 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.38 4.11 9.04 45.56 0.41 4.52 16 32 H 0.10 1.33 7.63 -51.93 -0.40 0.93 16 33 H 0.08 1.01 8.08 -51.93 -0.42 0.59 16 34 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 35 H 0.12 0.93 8.06 -52.49 -0.42 0.50 16 36 H 0.12 0.84 8.06 -52.48 -0.42 0.42 16 37 H 0.12 0.90 8.06 -52.49 -0.42 0.47 16 38 H 0.12 1.18 8.03 -52.49 -0.42 0.76 16 39 H 0.40 7.31 7.98 -40.82 -0.33 6.98 16 40 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 LS Contribution 346.08 15.07 5.22 5.22 Total: -1.00 -29.95 346.08 -6.45 -36.40 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: -3.94 Total: 10.77 kcal Atomic # 6 Polarization: 5.16 SS G_CDS: -2.73 Total: 2.43 kcal Atomic # 7 Polarization: -36.74 SS G_CDS: 0.26 Total: -36.48 kcal Atomic # 8 Polarization: -18.89 SS G_CDS: -0.33 Total: -19.23 kcal Atomic # 9 Polarization: -14.15 SS G_CDS: 0.10 Total: -14.05 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.02 Total: 14.94 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -29.95 -6.45 -36.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928806014.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -167.986 kcal (2) G-P(sol) polarization free energy of solvation -29.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -204.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds