Wall clock time and date at job start Tue Mar 31 2020 16:49:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42906 * 109.47122 * 2 1 4 4 C 1.52992 * 109.47351 * 120.00078 * 2 1 3 5 5 C 1.50704 * 109.47115 * 176.14135 * 4 2 1 6 6 O 1.21279 * 120.00370 * 5.43413 * 5 4 2 7 7 N 1.34777 * 119.99760 * 185.44025 * 5 4 2 8 8 C 1.46504 * 119.99649 * 180.02562 * 7 5 4 9 9 H 1.08993 * 109.47327 * 324.99343 * 8 7 5 10 10 C 1.50705 * 109.46812 * 204.99369 * 8 7 5 11 11 H 1.07999 * 119.99869 * 0.02562 * 10 8 7 12 12 C 1.37873 * 119.99751 * 179.97438 * 10 8 7 13 13 N 1.31515 * 120.00593 * 359.97438 * 12 10 8 14 14 Si 1.86804 * 120.00027 * 180.02562 * 12 10 8 15 15 H 1.48497 * 109.47375 * 89.99642 * 14 12 10 16 16 H 1.48500 * 109.47262 * 209.99995 * 14 12 10 17 17 H 1.48505 * 109.46946 * 329.99981 * 14 12 10 18 18 C 1.52999 * 109.47574 * 84.99955 * 8 7 5 19 19 F 1.39895 * 109.47231 * 59.99128 * 18 8 7 20 20 F 1.39894 * 109.47510 * 180.02562 * 18 8 7 21 21 F 1.39910 * 109.46814 * 299.99703 * 18 8 7 22 22 C 1.50700 * 109.47129 * 240.00299 * 2 1 3 23 23 C 1.38238 * 120.00060 * 89.99597 * 22 2 1 24 24 C 1.38235 * 119.99785 * 180.02562 * 23 22 2 25 25 C 1.38232 * 120.00096 * 359.95260 * 24 23 22 26 26 C 1.38230 * 120.00177 * 0.28252 * 25 24 23 27 27 C 1.38231 * 120.00131 * 270.02199 * 22 2 1 28 28 H 1.08999 * 109.47314 * 184.95003 * 1 2 3 29 29 H 1.09004 * 109.46848 * 304.94439 * 1 2 3 30 30 H 1.09004 * 109.47505 * 64.94668 * 1 2 3 31 31 H 0.96694 * 113.99733 * 180.02562 * 3 2 1 32 32 H 1.08997 * 109.47346 * 296.13850 * 4 2 1 33 33 H 1.08996 * 109.47053 * 56.14299 * 4 2 1 34 34 H 0.96997 * 120.00607 * 359.97438 * 7 5 4 35 35 H 0.96999 * 120.00511 * 180.02562 * 13 12 10 36 36 H 1.07999 * 119.99855 * 0.02562 * 23 22 2 37 37 H 1.07999 * 119.99675 * 179.97438 * 24 23 22 38 38 H 1.08004 * 120.00237 * 180.02562 * 25 24 23 39 39 H 1.08001 * 120.00456 * 179.72000 * 26 25 24 40 40 H 1.08005 * 119.99971 * 359.97438 * 27 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0400 -0.7212 1.2491 5 6 3.5440 -0.8045 1.2022 6 8 4.1547 -0.2487 0.3141 7 7 4.2103 -1.4969 2.1472 8 6 5.6724 -1.5774 2.1019 9 1 6.0024 -1.6115 1.0637 10 6 6.1292 -2.8238 2.8154 11 1 5.4030 -3.4895 3.2580 12 6 7.4741 -3.1147 2.9023 13 7 8.3584 -2.3048 2.3621 14 14 8.0403 -4.6599 3.7861 15 1 8.1132 -5.7847 2.8193 16 1 9.3824 -4.4281 4.3779 17 1 7.0753 -4.9954 4.8639 18 6 6.2725 -0.3484 2.7877 19 9 5.8489 -0.3046 4.1202 20 9 7.6686 -0.4250 2.7439 21 9 5.8484 0.8087 2.1253 22 6 2.0323 -0.7103 -1.2305 23 6 2.2626 0.0006 -2.3934 24 6 2.7229 -0.6511 -3.5223 25 6 2.9538 -2.0136 -3.4879 26 6 2.7188 -2.7253 -2.3265 27 6 2.2622 -2.0730 -1.1965 28 1 -0.3634 -1.0238 0.0887 29 1 -0.3633 0.5887 0.8424 30 1 -0.3634 0.4352 -0.9310 31 1 2.9702 1.4236 -0.0004 32 1 1.7343 -0.1690 2.1378 33 1 1.6213 -1.7270 1.2844 34 1 3.7220 -1.9413 2.8578 35 1 9.3045 -2.5096 2.4229 36 1 2.0829 1.0653 -2.4200 37 1 2.9024 -0.0957 -4.4309 38 1 3.3138 -2.5227 -4.3698 39 1 2.8949 -3.7906 -2.3009 40 1 2.0823 -2.6285 -0.2879 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928807494.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:49:21 Heat of formation + Delta-G solvation = -201.112152 kcal Electronic energy + Delta-G solvation = -30257.635158 eV Core-core repulsion = 25622.934012 eV Total energy + Delta-G solvation = -4634.701146 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.118 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -48.38894 -46.04543 -45.65178 -40.33845 -38.48403 -36.73434 -34.64064 -32.87419 -32.49092 -30.67009 -29.80406 -28.99374 -27.27275 -24.60410 -23.18666 -22.29863 -21.68473 -20.26154 -19.75923 -17.63176 -17.50338 -16.91891 -16.68437 -16.50901 -16.27466 -15.66681 -15.10229 -14.99008 -14.78885 -14.36900 -14.19946 -13.84181 -13.47692 -13.17506 -12.96894 -12.80952 -12.50728 -12.46155 -12.43614 -12.35667 -12.31012 -12.10235 -12.01546 -11.86158 -11.67029 -11.58994 -11.23019 -11.05160 -10.89054 -10.82424 -10.61754 -10.45691 -9.88585 -9.71727 -9.31112 -8.76920 -8.66961 -8.48511 -8.28711 -6.28064 -4.52320 1.57542 1.65254 3.11662 3.15693 3.21813 3.24287 3.72578 4.00001 4.16994 4.35061 4.52001 4.70168 4.79649 4.89022 5.01469 5.17847 5.19824 5.30244 5.43184 5.53521 5.61258 5.69466 5.70072 5.80127 5.82987 5.89212 5.94132 6.11837 6.18064 6.19695 6.25179 6.67258 6.72261 6.78979 6.88926 7.09363 7.22407 7.41650 7.58580 7.92087 8.24131 8.44865 8.81307 9.15839 10.63587 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.014886 B = 0.004419 C = 0.003974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1880.493096 B = 6335.236768 C = 7044.826386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.191 3.809 3 O -0.560 6.560 4 C -0.174 4.174 5 C 0.507 3.493 6 O -0.531 6.531 7 N -0.710 5.710 8 C 0.246 3.754 9 H 0.085 0.915 10 C -0.553 4.553 11 H 0.077 0.923 12 C 0.065 3.935 13 N -0.839 5.839 14 Si 0.914 3.086 15 H -0.276 1.276 16 H -0.282 1.282 17 H -0.270 1.270 18 C 0.417 3.583 19 F -0.210 7.210 20 F -0.137 7.137 21 F -0.218 7.218 22 C -0.087 4.087 23 C -0.099 4.099 24 C -0.122 4.122 25 C -0.125 4.125 26 C -0.117 4.117 27 C -0.111 4.111 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.392 0.608 32 H 0.102 0.898 33 H 0.099 0.901 34 H 0.398 0.602 35 H 0.268 0.732 36 H 0.123 0.877 37 H 0.117 0.883 38 H 0.116 0.884 39 H 0.118 0.882 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.028 0.448 -4.986 13.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.149 3.851 3 O -0.371 6.371 4 C -0.214 4.214 5 C 0.293 3.707 6 O -0.409 6.409 7 N -0.359 5.359 8 C 0.140 3.860 9 H 0.103 0.897 10 C -0.590 4.590 11 H 0.095 0.905 12 C -0.144 4.144 13 N -0.472 5.472 14 Si 0.741 3.259 15 H -0.202 1.202 16 H -0.208 1.208 17 H -0.195 1.195 18 C 0.361 3.639 19 F -0.192 7.192 20 F -0.118 7.118 21 F -0.200 7.200 22 C -0.087 4.087 23 C -0.117 4.117 24 C -0.140 4.140 25 C -0.143 4.143 26 C -0.135 4.135 27 C -0.129 4.129 28 H 0.089 0.911 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.245 0.755 32 H 0.121 0.879 33 H 0.117 0.883 34 H 0.232 0.768 35 H 0.079 0.921 36 H 0.141 0.859 37 H 0.135 0.865 38 H 0.134 0.866 39 H 0.136 0.864 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -12.950 1.042 -5.645 14.165 hybrid contribution 1.080 -0.952 1.060 1.787 sum -11.871 0.090 -4.585 12.726 Atomic orbital electron populations 1.21748 0.91782 1.02380 1.03181 1.19601 0.93888 0.82184 0.89398 1.86350 1.29601 1.24537 1.96656 1.22562 0.94089 1.03563 1.01198 1.20463 0.89369 0.78833 0.82023 1.90629 1.69527 1.45631 1.35101 1.46085 1.08498 1.52647 1.28658 1.19704 0.75836 0.90896 0.99517 0.89737 1.20866 0.92932 1.06062 1.39138 0.90517 1.25081 0.96372 0.97506 0.95417 1.70393 1.02418 1.33657 1.40738 0.86224 0.78299 0.81817 0.79577 1.20191 1.20761 1.19508 1.23146 0.79098 0.85198 0.76484 1.92988 1.90440 1.96917 1.38818 1.93404 1.27255 1.95298 1.95853 1.93065 1.90491 1.55316 1.81137 1.20268 0.98979 0.93973 0.95480 1.20861 0.98727 0.99870 0.92237 1.21065 1.00012 0.94661 0.98267 1.21070 1.00656 0.94528 0.98065 1.21050 0.99489 0.99755 0.93208 1.20968 0.99699 0.94072 0.98173 0.91109 0.91413 0.91584 0.75453 0.87941 0.88261 0.76796 0.92087 0.85914 0.86523 0.86601 0.86393 0.86536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.41 8.82 37.15 0.33 -1.08 16 2 C 0.19 2.58 0.95 -91.78 -0.09 2.49 16 3 O -0.56 -8.69 11.95 -52.48 -0.63 -9.32 16 4 C -0.17 -2.29 4.44 -27.89 -0.12 -2.42 16 5 C 0.51 9.10 6.11 -10.98 -0.07 9.03 16 6 O -0.53 -11.17 11.35 -11.69 -0.13 -11.30 16 7 N -0.71 -13.62 4.99 -54.93 -0.27 -13.90 16 8 C 0.25 5.91 2.21 -69.08 -0.15 5.76 16 9 H 0.09 2.30 7.58 -51.93 -0.39 1.91 16 10 C -0.55 -13.76 8.46 -34.44 -0.29 -14.05 16 11 H 0.08 1.80 7.74 -52.49 -0.41 1.39 16 12 C 0.07 1.67 5.20 -17.82 -0.09 1.58 16 13 N -0.84 -22.77 9.51 55.43 0.53 -22.24 16 14 Si 0.91 19.80 29.54 -169.99 -5.02 14.78 16 15 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 16 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 17 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 18 C 0.42 10.48 2.81 37.16 0.10 10.58 16 19 F -0.21 -5.09 16.94 2.25 0.04 -5.06 16 20 F -0.14 -3.76 12.92 2.25 0.03 -3.73 16 21 F -0.22 -5.38 15.68 2.25 0.04 -5.35 16 22 C -0.09 -1.26 3.16 -104.62 -0.33 -1.59 16 23 C -0.10 -1.44 9.35 -39.58 -0.37 -1.81 16 24 C -0.12 -1.65 10.05 -39.58 -0.40 -2.05 16 25 C -0.13 -1.67 10.05 -39.59 -0.40 -2.07 16 26 C -0.12 -1.63 10.05 -39.59 -0.40 -2.03 16 27 C -0.11 -1.60 8.31 -39.58 -0.33 -1.93 16 28 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.39 6.67 6.69 45.56 0.30 6.97 16 32 H 0.10 1.22 8.14 -51.93 -0.42 0.79 16 33 H 0.10 1.06 6.74 -51.93 -0.35 0.71 16 34 H 0.40 6.57 8.54 -40.82 -0.35 6.22 16 35 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 36 H 0.12 1.69 7.48 -52.49 -0.39 1.30 16 37 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 38 H 0.12 1.28 8.06 -52.48 -0.42 0.86 16 39 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 40 H 0.12 1.52 6.21 -52.48 -0.33 1.20 16 LS Contribution 340.18 15.07 5.13 5.13 Total: -1.00 -29.71 340.18 -6.91 -36.62 By element: Atomic # 1 Polarization: 17.96 SS G_CDS: -4.01 Total: 13.95 kcal Atomic # 6 Polarization: 3.01 SS G_CDS: -2.61 Total: 0.40 kcal Atomic # 7 Polarization: -36.39 SS G_CDS: 0.25 Total: -36.13 kcal Atomic # 8 Polarization: -19.86 SS G_CDS: -0.76 Total: -20.62 kcal Atomic # 9 Polarization: -14.24 SS G_CDS: 0.10 Total: -14.14 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.02 Total: 14.78 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -29.71 -6.91 -36.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928807494.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -164.488 kcal (2) G-P(sol) polarization free energy of solvation -29.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -201.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds