Wall clock time and date at job start Tue Mar 31 2020 16:49:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42901 * 109.46642 * 2 1 4 4 C 1.53000 * 109.47609 * 239.99985 * 2 1 3 5 5 C 1.50706 * 109.46970 * 59.99782 * 4 2 1 6 6 O 1.21282 * 120.00030 * 0.02562 * 5 4 2 7 7 N 1.34777 * 119.99882 * 180.02562 * 5 4 2 8 8 C 1.46496 * 120.00037 * 180.02562 * 7 5 4 9 9 H 1.09001 * 109.47054 * 324.99327 * 8 7 5 10 10 C 1.50697 * 109.47016 * 205.00057 * 8 7 5 11 11 H 1.07998 * 120.00039 * 359.97438 * 10 8 7 12 12 C 1.37881 * 120.00021 * 180.02562 * 10 8 7 13 13 N 1.31519 * 119.99891 * 359.97438 * 12 10 8 14 14 Si 1.86800 * 120.00032 * 180.02562 * 12 10 8 15 15 H 1.48501 * 109.47104 * 359.97438 * 14 12 10 16 16 H 1.48494 * 109.47457 * 119.99350 * 14 12 10 17 17 H 1.48496 * 109.46986 * 239.99711 * 14 12 10 18 18 C 1.52997 * 109.47294 * 84.99596 * 8 7 5 19 19 F 1.39905 * 109.47157 * 179.97438 * 18 8 7 20 20 F 1.39900 * 109.47010 * 60.00333 * 18 8 7 21 21 F 1.39897 * 109.47422 * 300.00024 * 18 8 7 22 22 C 1.50696 * 109.46948 * 119.99328 * 2 1 3 23 23 C 1.38238 * 119.99632 * 89.73203 * 22 2 1 24 24 C 1.38239 * 120.00049 * 179.78508 * 23 22 2 25 25 C 1.38232 * 119.99704 * 0.44536 * 24 23 22 26 26 C 1.38232 * 120.00377 * 359.80935 * 25 24 23 27 27 C 1.38235 * 119.99871 * 359.97438 * 26 25 24 28 28 H 1.09003 * 109.47065 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47420 * 299.99995 * 1 2 3 30 30 H 1.09002 * 109.46925 * 60.00258 * 1 2 3 31 31 H 0.96701 * 114.00029 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.46478 * 300.00021 * 4 2 1 33 33 H 1.08993 * 109.47089 * 179.97438 * 4 2 1 34 34 H 0.97005 * 119.99645 * 359.97438 * 7 5 4 35 35 H 0.97001 * 120.00022 * 180.02562 * 13 12 10 36 36 H 1.08007 * 120.00036 * 359.97438 * 23 22 2 37 37 H 1.08001 * 119.99651 * 180.27254 * 24 23 22 38 38 H 1.08000 * 119.99746 * 179.83619 * 25 24 23 39 39 H 1.07997 * 120.00272 * 180.02562 * 26 25 24 40 40 H 1.08002 * 120.00209 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.5378 -0.0108 -2.4797 6 8 0.8408 0.9755 -2.3685 7 7 1.8631 -0.4716 -3.7038 8 6 1.3752 0.2193 -4.9000 9 1 0.3762 0.6121 -4.7107 10 6 1.3238 -0.7491 -6.0535 11 1 1.6249 -1.7763 -5.9100 12 6 0.8935 -0.3234 -7.2923 13 7 0.5273 0.9276 -7.4671 14 14 0.8291 -1.5240 -8.7220 15 1 1.2894 -2.8606 -8.2671 16 1 -0.5655 -1.6241 -9.2220 17 1 1.7129 -1.0416 -9.8135 18 6 2.3200 1.3725 -5.2439 19 9 1.8544 2.0319 -6.3866 20 9 3.6021 0.8684 -5.4869 21 9 2.3676 2.2715 -4.1730 22 6 2.0323 -0.7103 1.2305 23 6 2.2574 -2.0738 1.1980 24 6 2.7224 -2.7247 2.3254 25 6 2.9535 -2.0136 3.4880 26 6 2.7234 -0.6509 3.5222 27 6 2.2627 0.0007 2.3935 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 2.9702 1.4238 0.0004 32 1 1.6768 -1.7489 -1.2491 33 1 3.1301 -0.7208 -1.2493 34 1 2.4208 -1.2602 -3.7927 35 1 0.2242 1.2270 -8.3386 36 1 2.0728 -2.6301 0.2908 37 1 2.9024 -3.7893 2.2986 38 1 3.3142 -2.5225 4.3696 39 1 2.9044 -0.0953 4.4304 40 1 2.0833 1.0654 2.4199 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928807496.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:49:28 Heat of formation + Delta-G solvation = -196.905494 kcal Electronic energy + Delta-G solvation = -29483.713116 eV Core-core repulsion = 24849.194384 eV Total energy + Delta-G solvation = -4634.518731 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.118 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -48.33135 -45.98568 -45.59717 -40.26621 -38.81927 -36.82084 -34.58738 -32.81323 -32.53770 -31.02620 -29.98682 -28.87288 -27.13208 -24.56745 -23.48628 -22.68417 -21.61408 -20.31547 -19.66936 -18.07102 -17.17718 -16.87455 -16.62603 -16.46677 -16.08363 -15.78594 -15.26739 -15.04255 -14.79194 -14.69075 -14.17741 -13.87082 -13.67437 -13.47540 -12.94119 -12.90467 -12.70914 -12.49910 -12.38273 -12.28099 -12.16105 -11.97899 -11.95149 -11.82242 -11.66426 -11.46071 -11.20740 -11.16579 -10.88124 -10.78313 -10.66875 -10.40226 -9.99950 -9.64292 -9.07958 -8.99662 -8.88611 -8.73432 -8.21128 -6.24621 -4.48610 1.16964 1.25016 3.16169 3.23225 3.25911 3.27092 3.61401 3.75530 4.19123 4.33884 4.56053 4.61993 4.71681 4.84404 4.90982 4.92472 4.97803 5.12925 5.30405 5.39524 5.48386 5.61048 5.76811 5.79347 5.87169 5.88157 5.89287 6.00319 6.12096 6.23695 6.31150 6.35442 6.45473 6.62806 6.84149 6.95856 7.21969 7.46948 7.62478 7.81537 8.34477 8.49729 8.94482 9.19644 10.66891 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.021789 B = 0.003227 C = 0.003030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.748494 B = 8674.663451 C = 9240.001988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.194 3.806 3 O -0.532 6.532 4 C -0.170 4.170 5 C 0.505 3.495 6 O -0.513 6.513 7 N -0.715 5.715 8 C 0.246 3.754 9 H 0.085 0.915 10 C -0.552 4.552 11 H 0.077 0.923 12 C 0.064 3.936 13 N -0.839 5.839 14 Si 0.914 3.086 15 H -0.270 1.270 16 H -0.280 1.280 17 H -0.280 1.280 18 C 0.416 3.584 19 F -0.138 7.138 20 F -0.211 7.211 21 F -0.216 7.216 22 C -0.111 4.111 23 C -0.114 4.114 24 C -0.122 4.122 25 C -0.124 4.124 26 C -0.123 4.123 27 C -0.102 4.102 28 H 0.060 0.940 29 H 0.057 0.943 30 H 0.100 0.900 31 H 0.369 0.631 32 H 0.099 0.901 33 H 0.092 0.908 34 H 0.396 0.604 35 H 0.267 0.733 36 H 0.126 0.874 37 H 0.121 0.879 38 H 0.119 0.881 39 H 0.120 0.880 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.579 -6.447 16.377 18.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.153 3.847 3 O -0.336 6.336 4 C -0.210 4.210 5 C 0.290 3.710 6 O -0.388 6.388 7 N -0.365 5.365 8 C 0.140 3.860 9 H 0.102 0.898 10 C -0.589 4.589 11 H 0.095 0.905 12 C -0.145 4.145 13 N -0.472 5.472 14 Si 0.741 3.259 15 H -0.194 1.194 16 H -0.206 1.206 17 H -0.206 1.206 18 C 0.360 3.640 19 F -0.119 7.119 20 F -0.193 7.193 21 F -0.198 7.198 22 C -0.111 4.111 23 C -0.132 4.132 24 C -0.140 4.140 25 C -0.142 4.142 26 C -0.141 4.141 27 C -0.120 4.120 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.119 0.881 31 H 0.215 0.785 32 H 0.117 0.883 33 H 0.110 0.890 34 H 0.230 0.770 35 H 0.078 0.922 36 H 0.143 0.857 37 H 0.139 0.861 38 H 0.137 0.863 39 H 0.138 0.862 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 3.345 -5.409 16.291 17.489 hybrid contribution 1.228 -0.982 -0.853 1.789 sum 4.574 -6.391 15.438 17.323 Atomic orbital electron populations 1.21993 0.91291 1.02040 1.05025 1.19613 0.95496 0.81613 0.88015 1.86722 1.25795 1.24506 1.96568 1.22499 1.02714 1.01432 0.94358 1.20291 0.81258 0.85011 0.84433 1.90679 1.36838 1.25203 1.86119 1.46109 1.53359 1.31540 1.05536 1.19685 0.93117 0.89301 0.83907 0.89790 1.20919 1.48532 0.96329 0.93138 0.90486 1.25093 0.94479 0.95620 0.99265 1.70417 1.38300 1.14068 1.24416 0.86171 0.77947 0.80563 0.81219 1.19429 1.20560 1.20583 1.23147 0.80475 0.85394 0.74974 1.93404 1.87025 1.82506 1.48948 1.92982 1.43811 1.87823 1.94661 1.93079 1.96678 1.71868 1.58151 1.20690 0.99583 0.94432 0.96443 1.21167 0.99269 0.94007 0.98747 1.21145 0.99809 0.99862 0.93174 1.21164 1.00483 0.94510 0.98060 1.21164 0.99858 0.94714 0.98333 1.21059 0.98298 1.00614 0.92066 0.92057 0.92438 0.88117 0.78504 0.88264 0.88950 0.77016 0.92185 0.85652 0.86087 0.86324 0.86161 0.85284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 8.50 37.16 0.32 -1.79 16 2 C 0.19 2.58 0.81 -91.77 -0.07 2.50 16 3 O -0.53 -7.89 10.86 -53.50 -0.58 -8.47 16 4 C -0.17 -2.22 4.26 -27.88 -0.12 -2.34 16 5 C 0.51 9.33 6.92 -10.98 -0.08 9.25 16 6 O -0.51 -11.41 11.53 -12.71 -0.15 -11.55 16 7 N -0.72 -14.01 4.98 -54.93 -0.27 -14.28 16 8 C 0.25 6.00 2.21 -69.09 -0.15 5.84 16 9 H 0.08 2.31 7.58 -51.93 -0.39 1.91 16 10 C -0.55 -13.89 8.47 -34.44 -0.29 -14.18 16 11 H 0.08 1.83 7.74 -52.49 -0.41 1.42 16 12 C 0.06 1.66 5.20 -17.82 -0.09 1.57 16 13 N -0.84 -22.92 9.50 55.43 0.53 -22.39 16 14 Si 0.91 19.93 29.54 -169.99 -5.02 14.91 16 15 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 16 H -0.28 -6.06 7.11 56.52 0.40 -5.65 16 17 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 18 C 0.42 10.63 2.81 37.16 0.10 10.73 16 19 F -0.14 -3.82 12.91 2.25 0.03 -3.79 16 20 F -0.21 -5.18 16.94 2.25 0.04 -5.14 16 21 F -0.22 -5.48 15.68 2.25 0.04 -5.45 16 22 C -0.11 -1.26 4.80 -104.62 -0.50 -1.76 16 23 C -0.11 -1.15 9.14 -39.58 -0.36 -1.51 16 24 C -0.12 -1.10 10.05 -39.58 -0.40 -1.50 16 25 C -0.12 -1.09 10.05 -39.59 -0.40 -1.49 16 26 C -0.12 -1.14 10.05 -39.58 -0.40 -1.54 16 27 C -0.10 -1.10 9.35 -39.58 -0.37 -1.47 16 28 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.10 1.78 5.51 -51.93 -0.29 1.49 16 31 H 0.37 4.31 9.04 45.56 0.41 4.72 16 32 H 0.10 1.07 6.51 -51.93 -0.34 0.73 16 33 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.40 6.65 8.54 -40.82 -0.35 6.30 16 35 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 36 H 0.13 1.10 6.17 -52.48 -0.32 0.77 16 37 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 38 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 39 H 0.12 0.88 8.06 -52.49 -0.42 0.45 16 40 H 0.13 1.37 7.48 -52.49 -0.39 0.98 16 LS Contribution 341.36 15.07 5.14 5.14 Total: -1.00 -31.13 341.36 -6.81 -37.94 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: -3.75 Total: 10.77 kcal Atomic # 6 Polarization: 5.13 SS G_CDS: -2.81 Total: 2.32 kcal Atomic # 7 Polarization: -36.93 SS G_CDS: 0.25 Total: -36.67 kcal Atomic # 8 Polarization: -19.30 SS G_CDS: -0.73 Total: -20.03 kcal Atomic # 9 Polarization: -14.48 SS G_CDS: 0.10 Total: -14.38 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -5.02 Total: 14.91 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.13 -6.81 -37.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928807496.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -158.962 kcal (2) G-P(sol) polarization free energy of solvation -31.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -196.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds