Wall clock time and date at job start Tue Mar 31 2020 16:49:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42901 * 109.46642 * 2 1 4 4 C 1.53000 * 109.47609 * 239.99985 * 2 1 3 5 5 C 1.50706 * 109.46970 * 59.99782 * 4 2 1 6 6 O 1.21282 * 120.00030 * 0.02562 * 5 4 2 7 7 N 1.34777 * 119.99882 * 180.02562 * 5 4 2 8 8 C 1.46496 * 120.00037 * 180.02562 * 7 5 4 9 9 H 1.09001 * 109.47054 * 324.99327 * 8 7 5 10 10 C 1.50697 * 109.47016 * 205.00057 * 8 7 5 11 11 H 1.07998 * 120.00039 * 359.97438 * 10 8 7 12 12 C 1.37881 * 120.00021 * 180.02562 * 10 8 7 13 13 N 1.31519 * 119.99891 * 359.97438 * 12 10 8 14 14 Si 1.86800 * 120.00032 * 180.02562 * 12 10 8 15 15 H 1.48501 * 109.47104 * 359.97438 * 14 12 10 16 16 H 1.48494 * 109.47457 * 119.99350 * 14 12 10 17 17 H 1.48496 * 109.46986 * 239.99711 * 14 12 10 18 18 C 1.52997 * 109.47294 * 84.99596 * 8 7 5 19 19 F 1.39905 * 109.47157 * 179.97438 * 18 8 7 20 20 F 1.39900 * 109.47010 * 60.00333 * 18 8 7 21 21 F 1.39897 * 109.47422 * 300.00024 * 18 8 7 22 22 C 1.50696 * 109.46948 * 119.99328 * 2 1 3 23 23 C 1.38238 * 119.99632 * 89.73203 * 22 2 1 24 24 C 1.38239 * 120.00049 * 179.78508 * 23 22 2 25 25 C 1.38232 * 119.99704 * 0.44536 * 24 23 22 26 26 C 1.38232 * 120.00377 * 359.80935 * 25 24 23 27 27 C 1.38235 * 119.99871 * 359.97438 * 26 25 24 28 28 H 1.09003 * 109.47065 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47420 * 299.99995 * 1 2 3 30 30 H 1.09002 * 109.46925 * 60.00258 * 1 2 3 31 31 H 0.96701 * 114.00029 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.46478 * 300.00021 * 4 2 1 33 33 H 1.08993 * 109.47089 * 179.97438 * 4 2 1 34 34 H 0.97005 * 119.99645 * 359.97438 * 7 5 4 35 35 H 0.97001 * 120.00022 * 180.02562 * 13 12 10 36 36 H 1.08007 * 120.00036 * 359.97438 * 23 22 2 37 37 H 1.08001 * 119.99651 * 180.27254 * 24 23 22 38 38 H 1.08000 * 119.99746 * 179.83619 * 25 24 23 39 39 H 1.07997 * 120.00272 * 180.02562 * 26 25 24 40 40 H 1.08002 * 120.00209 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.5378 -0.0108 -2.4797 6 8 0.8408 0.9755 -2.3685 7 7 1.8631 -0.4716 -3.7038 8 6 1.3752 0.2193 -4.9000 9 1 0.3762 0.6121 -4.7107 10 6 1.3238 -0.7491 -6.0535 11 1 1.6249 -1.7763 -5.9100 12 6 0.8935 -0.3234 -7.2923 13 7 0.5273 0.9276 -7.4671 14 14 0.8291 -1.5240 -8.7220 15 1 1.2894 -2.8606 -8.2671 16 1 -0.5655 -1.6241 -9.2220 17 1 1.7129 -1.0416 -9.8135 18 6 2.3200 1.3725 -5.2439 19 9 1.8544 2.0319 -6.3866 20 9 3.6021 0.8684 -5.4869 21 9 2.3676 2.2715 -4.1730 22 6 2.0323 -0.7103 1.2305 23 6 2.2574 -2.0738 1.1980 24 6 2.7224 -2.7247 2.3254 25 6 2.9535 -2.0136 3.4880 26 6 2.7234 -0.6509 3.5222 27 6 2.2627 0.0007 2.3935 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 2.9702 1.4238 0.0004 32 1 1.6768 -1.7489 -1.2491 33 1 3.1301 -0.7208 -1.2493 34 1 2.4208 -1.2602 -3.7927 35 1 0.2242 1.2270 -8.3386 36 1 2.0728 -2.6301 0.2908 37 1 2.9024 -3.7893 2.2986 38 1 3.3142 -2.5225 4.3696 39 1 2.9044 -0.0953 4.4304 40 1 2.0833 1.0654 2.4199 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928807496.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:49:27 Heat of formation + Delta-G solvation = -216.914922 kcal Electronic energy + Delta-G solvation = -29484.580789 eV Core-core repulsion = 24849.194384 eV Total energy + Delta-G solvation = -4635.386405 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.118 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -50.39570 -48.02953 -47.71143 -41.34621 -40.01531 -37.90132 -36.34717 -34.43435 -33.80172 -31.75533 -31.15008 -30.22063 -28.50971 -26.56409 -24.48799 -23.60971 -23.13173 -21.62819 -20.97386 -19.44474 -18.84367 -18.74871 -18.59886 -17.93647 -17.37047 -17.11832 -16.77621 -16.37368 -16.04532 -15.56342 -15.47276 -15.16259 -14.98558 -14.85812 -14.71174 -14.44910 -14.32950 -14.26791 -14.05959 -14.00183 -13.83534 -13.58384 -13.21380 -13.03586 -12.98470 -12.83407 -12.64949 -12.52513 -12.45304 -12.19200 -11.97909 -11.65948 -11.51919 -11.04287 -10.68946 -10.50083 -9.93818 -9.77494 -9.64411 -8.20468 -6.51113 0.43896 0.54486 1.45835 1.47247 1.60009 1.78582 2.23516 2.41524 2.57404 2.90066 2.95247 3.34017 3.58867 3.68941 3.80582 3.88535 4.06497 4.10273 4.18308 4.21738 4.31652 4.36438 4.54440 4.67576 4.71289 4.77360 4.91093 4.97021 5.01110 5.12799 5.21408 5.35406 5.51877 5.60051 5.61959 5.66947 5.68417 5.71771 6.14752 6.54610 6.81913 6.87543 7.19005 7.50038 8.72249 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.021789 B = 0.003227 C = 0.003030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.748494 B = 8674.663451 C = 9240.001988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.196 3.804 3 O -0.557 6.557 4 C -0.156 4.156 5 C 0.500 3.500 6 O -0.555 6.555 7 N -0.710 5.710 8 C 0.253 3.747 9 H 0.044 0.956 10 C -0.560 4.560 11 H 0.093 0.907 12 C 0.013 3.987 13 N -0.876 5.876 14 Si 0.982 3.018 15 H -0.253 1.253 16 H -0.279 1.279 17 H -0.283 1.283 18 C 0.413 3.587 19 F -0.153 7.153 20 F -0.204 7.204 21 F -0.218 7.218 22 C -0.120 4.120 23 C -0.120 4.120 24 C -0.124 4.124 25 C -0.125 4.125 26 C -0.128 4.128 27 C -0.117 4.117 28 H 0.079 0.921 29 H 0.055 0.945 30 H 0.063 0.937 31 H 0.379 0.621 32 H 0.131 0.869 33 H 0.118 0.882 34 H 0.412 0.588 35 H 0.267 0.733 36 H 0.140 0.860 37 H 0.145 0.855 38 H 0.143 0.857 39 H 0.137 0.863 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.912 -9.448 17.575 20.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.154 3.846 3 O -0.363 6.363 4 C -0.196 4.196 5 C 0.287 3.713 6 O -0.432 6.432 7 N -0.362 5.362 8 C 0.146 3.854 9 H 0.062 0.938 10 C -0.596 4.596 11 H 0.111 0.889 12 C -0.192 4.192 13 N -0.510 5.510 14 Si 0.806 3.194 15 H -0.177 1.177 16 H -0.204 1.204 17 H -0.209 1.209 18 C 0.356 3.644 19 F -0.135 7.135 20 F -0.186 7.186 21 F -0.200 7.200 22 C -0.120 4.120 23 C -0.138 4.138 24 C -0.142 4.142 25 C -0.143 4.143 26 C -0.146 4.146 27 C -0.135 4.135 28 H 0.098 0.902 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.227 0.773 32 H 0.148 0.852 33 H 0.136 0.864 34 H 0.249 0.751 35 H 0.077 0.923 36 H 0.158 0.842 37 H 0.163 0.837 38 H 0.161 0.839 39 H 0.155 0.845 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 4.707 -8.444 17.521 20.011 hybrid contribution 0.816 -0.006 -1.125 1.389 sum 5.523 -8.450 16.397 19.255 Atomic orbital electron populations 1.21947 0.92723 1.02629 1.02991 1.19579 0.94554 0.81248 0.89173 1.86689 1.26941 1.25937 1.96729 1.22518 1.04062 1.02079 0.90953 1.21262 0.80142 0.84584 0.85283 1.90681 1.38542 1.27289 1.86709 1.45991 1.53686 1.31857 1.04671 1.19241 0.91209 0.89167 0.85824 0.93778 1.21283 1.48038 0.97019 0.93287 0.88881 1.26022 0.93979 0.97143 1.02093 1.70554 1.39427 1.16066 1.24945 0.85126 0.77758 0.78935 0.77591 1.17664 1.20423 1.20867 1.23362 0.80938 0.85608 0.74469 1.93372 1.87304 1.82903 1.49884 1.92979 1.43316 1.87674 1.94618 1.93070 1.96719 1.72078 1.58145 1.20435 1.01071 0.95023 0.95490 1.21359 0.99177 0.93366 0.99889 1.21474 0.98884 1.01118 0.92731 1.21522 0.99469 0.94284 0.98979 1.21408 0.99369 0.95380 0.98432 1.21102 0.99181 1.00449 0.92733 0.90169 0.92613 0.91844 0.77279 0.85153 0.86433 0.75144 0.92296 0.84236 0.83726 0.83916 0.84480 0.86182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.22 8.50 71.98 0.61 -3.60 16 2 C 0.20 5.03 0.81 -11.54 -0.01 5.02 16 3 O -0.56 -16.72 10.86 -131.52 -1.43 -18.15 16 4 C -0.16 -3.78 4.26 29.85 0.13 -3.66 16 5 C 0.50 18.34 6.92 87.66 0.61 18.94 16 6 O -0.55 -25.50 11.53 14.43 0.17 -25.33 16 7 N -0.71 -27.41 4.98 -446.10 -2.22 -29.63 16 8 C 0.25 12.55 2.21 44.24 0.10 12.64 16 9 H 0.04 2.55 7.58 -2.39 -0.02 2.53 16 10 C -0.56 -27.91 8.47 25.60 0.22 -27.69 16 11 H 0.09 4.24 7.74 -2.91 -0.02 4.22 16 12 C 0.01 0.65 5.20 84.65 0.44 1.09 16 13 N -0.88 -48.80 9.50 21.45 0.20 -48.59 16 14 Si 0.98 40.30 29.54 68.60 2.03 42.32 16 15 H -0.25 -9.62 7.11 99.48 0.71 -8.91 16 16 H -0.28 -11.29 7.11 99.48 0.71 -10.58 16 17 H -0.28 -11.65 7.11 99.48 0.71 -10.95 16 18 C 0.41 21.42 2.81 71.98 0.20 21.62 16 19 F -0.15 -8.76 12.91 44.97 0.58 -8.18 16 20 F -0.20 -9.95 16.94 44.97 0.76 -9.19 16 21 F -0.22 -11.35 15.68 44.97 0.71 -10.64 16 22 C -0.12 -2.49 4.80 -19.87 -0.10 -2.59 16 23 C -0.12 -2.04 9.14 22.27 0.20 -1.83 16 24 C -0.12 -1.79 10.05 22.27 0.22 -1.56 16 25 C -0.12 -1.77 10.05 22.27 0.22 -1.54 16 26 C -0.13 -2.09 10.05 22.27 0.22 -1.87 16 27 C -0.12 -2.37 9.35 22.27 0.21 -2.16 16 28 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.06 2.34 5.51 -2.39 -0.01 2.32 16 31 H 0.38 8.88 9.04 -74.06 -0.67 8.21 16 32 H 0.13 2.36 6.51 -2.39 -0.02 2.35 16 33 H 0.12 2.31 8.14 -2.39 -0.02 2.29 16 34 H 0.41 13.04 8.54 -92.70 -0.79 12.25 16 35 H 0.27 14.12 8.31 -92.71 -0.77 13.35 16 36 H 0.14 1.88 6.17 -2.91 -0.02 1.86 16 37 H 0.14 1.37 8.06 -2.91 -0.02 1.34 16 38 H 0.14 1.30 8.06 -2.91 -0.02 1.27 16 39 H 0.14 1.68 8.06 -2.91 -0.02 1.66 16 40 H 0.12 2.57 7.48 -2.91 -0.02 2.54 16 Total: -1.00 -69.10 341.36 3.72 -65.38 By element: Atomic # 1 Polarization: 29.56 SS G_CDS: -0.35 Total: 29.21 kcal Atomic # 6 Polarization: 9.53 SS G_CDS: 3.28 Total: 12.81 kcal Atomic # 7 Polarization: -76.21 SS G_CDS: -2.02 Total: -78.23 kcal Atomic # 8 Polarization: -42.22 SS G_CDS: -1.26 Total: -43.48 kcal Atomic # 9 Polarization: -30.06 SS G_CDS: 2.05 Total: -28.01 kcal Atomic # 14 Polarization: 40.30 SS G_CDS: 2.03 Total: 42.32 kcal Total: -69.10 3.72 -65.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928807496.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -151.539 kcal (2) G-P(sol) polarization free energy of solvation -69.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -220.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -216.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds