Wall clock time and date at job start Tue Mar 31 2020 16:16:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35749 * 116.99730 * 2 1 4 4 C 1.38556 * 119.72940 * 359.97438 * 3 2 1 5 5 C 1.38638 * 119.78833 * 180.02562 * 4 3 2 6 6 O 1.35028 * 120.73981 * 179.97438 * 5 4 3 7 7 C 1.34223 * 121.45904 * 180.02562 * 6 5 4 8 8 O 1.21802 * 119.15350 * 179.97438 * 7 6 5 9 9 C 1.41004 * 121.69603 * 359.97438 * 7 6 5 10 10 C 1.35843 * 119.82815 * 0.02562 * 9 7 6 11 11 C 1.50703 * 120.90227 * 180.02562 * 10 9 7 12 12 C 1.40765 * 119.40757 * 0.28944 * 5 4 3 13 13 C 1.39924 * 120.03490 * 359.40283 * 12 5 4 14 14 C 1.36498 * 119.79451 * 0.59768 * 13 12 5 15 15 C 1.50698 * 119.78523 * 179.69065 * 14 13 12 16 16 C 1.53009 * 109.47141 * 265.02090 * 15 14 13 17 17 C 1.50698 * 109.47141 * 179.97438 * 16 15 14 18 18 O 1.21295 * 120.00160 * 0.02562 * 17 16 15 19 19 N 1.34774 * 119.99894 * 180.02562 * 17 16 15 20 20 C 1.37096 * 120.00097 * 179.97438 * 19 17 16 21 21 H 1.08002 * 119.99947 * 0.02562 * 20 19 17 22 22 C 1.38957 * 120.00085 * 179.97438 * 20 19 17 23 23 N 1.31411 * 120.00106 * 180.02562 * 22 20 19 24 24 Si 1.86800 * 119.99852 * 0.02562 * 22 20 19 25 25 H 1.48497 * 109.47287 * 89.99822 * 24 22 20 26 26 H 1.48497 * 109.46948 * 209.99887 * 24 22 20 27 27 H 1.48502 * 109.47045 * 329.99820 * 24 22 20 28 28 H 1.09006 * 109.47075 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47088 * 300.00069 * 1 2 3 30 30 H 1.08994 * 109.47338 * 60.00376 * 1 2 3 31 31 H 1.08006 * 120.10733 * 0.02699 * 4 3 2 32 32 H 1.08003 * 120.08594 * 179.97438 * 9 7 6 33 33 H 1.09002 * 109.47152 * 89.99939 * 11 10 9 34 34 H 1.09001 * 109.46980 * 330.00040 * 11 10 9 35 35 H 1.09004 * 109.47113 * 210.00021 * 11 10 9 36 36 H 1.08000 * 120.10637 * 180.31184 * 13 12 5 37 37 H 1.08994 * 109.47589 * 25.02087 * 15 14 13 38 38 H 1.08999 * 109.47553 * 145.02435 * 15 14 13 39 39 H 1.08994 * 109.46877 * 300.00433 * 16 15 14 40 40 H 1.08999 * 109.46615 * 59.99770 * 16 15 14 41 41 H 0.97005 * 120.00123 * 0.02562 * 19 17 16 42 42 H 0.96989 * 120.00153 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2096 0.0000 4 6 1.2851 2.3680 -0.0005 5 6 1.9131 3.6039 -0.0011 6 8 1.1912 4.7450 -0.0021 7 6 1.7842 5.9491 -0.0032 8 8 1.0921 6.9514 -0.0046 9 6 3.1878 6.0837 -0.0027 10 6 3.9729 4.9751 -0.0017 11 6 5.4754 5.0908 -0.0005 12 6 3.3195 3.6646 -0.0073 13 6 4.0714 2.4846 -0.0002 14 6 3.4369 1.2760 0.0004 15 6 4.2470 0.0053 0.0010 16 6 4.4156 -0.4928 -1.4360 17 6 5.2261 -1.7632 -1.4354 18 8 5.6290 -2.2252 -0.3888 19 7 5.5035 -2.3860 -2.5980 20 6 6.2413 -3.5415 -2.5976 21 1 6.6000 -3.9528 -1.6657 22 6 6.5268 -4.1840 -3.7962 23 7 7.2336 -5.2918 -3.7958 24 14 5.9057 -3.4729 -5.4081 25 1 6.9169 -2.5342 -5.9573 26 1 5.6737 -4.5733 -6.3777 27 1 4.6329 -2.7458 -5.1705 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 0.2067 2.3083 -0.0005 32 1 3.6375 7.0656 -0.0040 33 1 5.8369 5.1191 1.0274 34 1 5.7698 6.0059 -0.5145 35 1 5.9064 4.2311 -0.5137 36 1 5.1505 2.5298 0.0002 37 1 5.2275 0.1996 0.4355 38 1 3.7323 -0.7535 0.5904 39 1 3.4350 -0.6871 -1.8705 40 1 4.9302 0.2660 -2.0254 41 1 5.1816 -2.0164 -3.4351 42 1 7.4326 -5.7404 -4.6324 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931298500.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:16:24 Heat of formation + Delta-G solvation = -133.092738 kcal Electronic energy + Delta-G solvation = -27439.699500 eV Core-core repulsion = 23349.804638 eV Total energy + Delta-G solvation = -4089.894862 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.04140 -41.25542 -40.20179 -39.23029 -38.21924 -36.46253 -36.00082 -34.45319 -33.70097 -31.29093 -30.49136 -29.69112 -28.30654 -27.39157 -25.61043 -24.28495 -23.48872 -22.75284 -21.18733 -20.73308 -20.11153 -18.82272 -18.68589 -18.02439 -17.93627 -17.56248 -17.00771 -16.86826 -16.66442 -16.13906 -15.82134 -15.40497 -15.13391 -14.85352 -14.72783 -14.64125 -14.50861 -14.41990 -14.31276 -14.08677 -13.85060 -13.49893 -13.19190 -12.96769 -12.86264 -12.67707 -12.57622 -12.38684 -12.14677 -12.10314 -11.95267 -11.81930 -11.49366 -11.43555 -10.76211 -10.43649 -10.22383 -9.85786 -9.07667 -8.39433 -5.99876 -0.79019 -0.10946 0.46638 1.24786 1.32114 1.36777 1.45751 1.71328 1.99779 2.19978 2.24537 2.54338 2.97987 3.09433 3.18082 3.27900 3.34716 3.63802 3.82299 3.91974 4.11493 4.25437 4.29682 4.34494 4.36425 4.37291 4.48772 4.51419 4.65009 4.76782 4.79441 4.80165 4.81854 4.83977 4.94282 5.16200 5.23692 5.31190 5.40317 5.44834 5.57635 5.98352 6.04590 6.17702 6.35835 6.60385 6.90485 7.42870 7.99196 8.78205 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.015740 B = 0.002708 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1778.490981 B =10336.977519 C =10976.865107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.314 6.314 3 C 0.193 3.807 4 C -0.233 4.233 5 C 0.168 3.832 6 O -0.288 6.288 7 C 0.506 3.494 8 O -0.520 6.520 9 C -0.292 4.292 10 C 0.072 3.928 11 C -0.134 4.134 12 C -0.198 4.198 13 C -0.001 4.001 14 C -0.131 4.131 15 C -0.044 4.044 16 C -0.114 4.114 17 C 0.451 3.549 18 O -0.625 6.625 19 N -0.593 5.593 20 C -0.328 4.328 21 H 0.057 0.943 22 C -0.015 4.015 23 N -0.935 5.935 24 Si 0.962 3.038 25 H -0.255 1.255 26 H -0.277 1.277 27 H -0.233 1.233 28 H 0.118 0.882 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.162 0.838 32 H 0.178 0.822 33 H 0.109 0.891 34 H 0.100 0.900 35 H 0.097 0.903 36 H 0.177 0.823 37 H 0.082 0.918 38 H 0.063 0.937 39 H 0.098 0.902 40 H 0.114 0.886 41 H 0.390 0.610 42 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.453 21.687 3.930 24.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.226 6.226 3 C 0.145 3.855 4 C -0.252 4.252 5 C 0.123 3.877 6 O -0.200 6.200 7 C 0.359 3.641 8 O -0.413 6.413 9 C -0.311 4.311 10 C 0.071 3.929 11 C -0.189 4.189 12 C -0.199 4.199 13 C -0.019 4.019 14 C -0.132 4.132 15 C -0.082 4.082 16 C -0.154 4.154 17 C 0.240 3.760 18 O -0.511 6.511 19 N -0.234 5.234 20 C -0.457 4.457 21 H 0.075 0.925 22 C -0.214 4.214 23 N -0.576 5.576 24 Si 0.782 3.218 25 H -0.180 1.180 26 H -0.202 1.202 27 H -0.156 1.156 28 H 0.136 0.864 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.180 0.820 32 H 0.196 0.804 33 H 0.127 0.873 34 H 0.118 0.882 35 H 0.115 0.885 36 H 0.194 0.806 37 H 0.100 0.900 38 H 0.082 0.918 39 H 0.116 0.884 40 H 0.132 0.868 41 H 0.225 0.775 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -10.552 21.458 4.517 24.335 hybrid contribution -0.586 -0.204 -0.804 1.015 sum -11.138 21.254 3.713 24.281 Atomic orbital electron populations 1.23512 0.75857 1.06047 1.02954 1.86198 1.23934 1.25752 1.86671 1.18870 0.91630 0.84016 0.90943 1.20523 1.02091 0.88152 1.14483 1.18902 0.89330 0.83689 0.95750 1.83465 1.44096 1.14850 1.77577 1.19696 0.90118 0.79759 0.74506 1.90939 1.68452 1.31717 1.50212 1.22307 0.90356 1.02397 1.15995 1.21840 0.98749 0.89348 0.82981 1.21239 0.86256 1.05926 1.05496 1.19096 0.91214 0.95318 1.14295 1.20946 1.01596 0.87937 0.91410 1.19082 0.90368 0.96281 1.07432 1.19978 0.99605 0.92993 0.95612 1.21506 1.00614 0.93811 0.99447 1.21094 0.83872 0.87971 0.83028 1.90541 1.58021 1.69616 1.32927 1.42123 1.49473 1.23478 1.08282 1.19038 1.29985 1.01394 0.95307 0.92522 1.26101 0.96687 0.95968 1.02618 1.69800 1.39476 1.18935 1.29354 0.85400 0.80329 0.79044 0.76998 1.17963 1.20228 1.15586 0.86400 0.90964 0.90832 0.82007 0.80423 0.87251 0.88174 0.88469 0.80555 0.89980 0.91810 0.88373 0.86782 0.77497 0.91203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.12 9.80 113.37 1.11 1.24 16 2 O -0.31 -6.38 9.59 -90.74 -0.87 -7.25 16 3 C 0.19 3.81 6.66 22.61 0.15 3.96 16 4 C -0.23 -4.27 8.97 22.44 0.20 -4.07 16 5 C 0.17 3.42 6.76 22.98 0.16 3.57 16 6 O -0.29 -7.04 9.82 14.63 0.14 -6.90 16 7 C 0.51 12.59 7.89 68.50 0.54 13.13 16 8 O -0.52 -16.50 17.91 18.94 0.34 -16.17 16 9 C -0.29 -4.92 9.62 22.39 0.22 -4.70 16 10 C 0.07 0.94 6.08 -18.28 -0.11 0.83 16 11 C -0.13 -0.73 9.64 71.24 0.69 -0.04 16 12 C -0.20 -3.30 5.87 -20.12 -0.12 -3.42 16 13 C 0.00 -0.02 8.97 22.27 0.20 0.18 16 14 C -0.13 -2.58 5.11 -20.01 -0.10 -2.68 16 15 C -0.04 -1.12 4.33 29.85 0.13 -0.99 16 16 C -0.11 -3.15 5.68 29.85 0.17 -2.98 16 17 C 0.45 19.33 7.78 87.66 0.68 20.01 16 18 O -0.63 -33.04 15.56 -3.08 -0.05 -33.09 16 19 N -0.59 -27.11 5.09 -306.98 -1.56 -28.67 16 20 C -0.33 -18.81 10.16 84.04 0.85 -17.96 16 21 H 0.06 3.87 7.39 -2.91 -0.02 3.85 16 22 C -0.02 -0.83 5.50 84.93 0.47 -0.36 16 23 N -0.93 -55.62 13.96 21.67 0.30 -55.32 16 24 Si 0.96 37.96 27.74 68.60 1.90 39.87 16 25 H -0.26 -9.47 7.11 99.48 0.71 -8.76 16 26 H -0.28 -10.94 7.11 99.48 0.71 -10.23 16 27 H -0.23 -7.73 6.52 99.48 0.65 -7.08 16 28 H 0.12 1.16 8.14 -2.38 -0.02 1.14 16 29 H 0.07 0.70 7.64 -2.39 -0.02 0.68 16 30 H 0.07 0.71 7.64 -2.39 -0.02 0.69 16 31 H 0.16 2.37 6.25 -2.91 -0.02 2.35 16 32 H 0.18 2.24 8.06 -2.91 -0.02 2.22 16 33 H 0.11 0.35 8.14 -2.39 -0.02 0.33 16 34 H 0.10 0.31 8.10 -2.39 -0.02 0.29 16 35 H 0.10 0.36 6.62 -2.38 -0.02 0.35 16 36 H 0.18 1.64 6.52 -2.91 -0.02 1.62 16 37 H 0.08 2.08 7.99 -2.39 -0.02 2.06 16 38 H 0.06 1.94 7.63 -2.39 -0.02 1.92 16 39 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 40 H 0.11 2.41 8.14 -2.39 -0.02 2.39 16 41 H 0.39 14.73 5.76 -92.70 -0.53 14.20 16 42 H 0.28 15.15 8.31 -92.72 -0.77 14.38 16 Total: -1.00 -82.92 359.70 5.93 -76.99 By element: Atomic # 1 Polarization: 24.32 SS G_CDS: 0.49 Total: 24.81 kcal Atomic # 6 Polarization: 0.49 SS G_CDS: 5.23 Total: 5.72 kcal Atomic # 7 Polarization: -82.72 SS G_CDS: -1.26 Total: -83.98 kcal Atomic # 8 Polarization: -62.96 SS G_CDS: -0.43 Total: -63.40 kcal Atomic # 14 Polarization: 37.96 SS G_CDS: 1.90 Total: 39.87 kcal Total: -82.92 5.93 -76.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931298500.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.102 kcal (2) G-P(sol) polarization free energy of solvation -82.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds