Wall clock time and date at job start Tue Mar 31 2020 17:49:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34235 * 117.00083 * 2 1 4 4 O 1.20822 * 119.99693 * 0.02562 * 3 2 1 5 5 C 1.50693 * 119.99673 * 179.97438 * 3 2 1 6 6 H 1.08995 * 108.57993 * 359.67170 * 5 3 2 7 7 C 1.54546 * 108.76308 * 241.47488 * 5 3 2 8 8 S 1.84191 * 101.40524 * 215.85686 * 7 5 3 9 9 C 1.84074 * 93.96717 * 32.39416 * 8 7 5 10 10 H 1.08990 * 110.77625 * 84.78103 * 9 8 7 11 11 C 1.50706 * 110.77592 * 208.21128 * 9 8 7 12 12 O 1.20819 * 119.99627 * 223.21152 * 11 9 8 13 13 O 1.34228 * 119.99819 * 43.21802 * 11 9 8 14 14 C 1.45203 * 116.99446 * 179.97438 * 13 11 9 15 15 N 1.45921 * 108.76012 * 117.86622 * 5 3 2 16 16 C 1.46901 * 110.99824 * 352.91882 * 15 5 3 17 17 H 1.09002 * 109.47356 * 332.17781 * 16 15 5 18 18 C 1.52997 * 109.47099 * 92.17848 * 16 15 5 19 19 C 1.53004 * 109.47257 * 212.17867 * 16 15 5 20 20 C 1.53001 * 109.46989 * 64.99894 * 19 16 15 21 21 C 1.50698 * 109.46786 * 179.97438 * 20 19 16 22 22 H 1.07995 * 120.00546 * 0.02562 * 21 20 19 23 23 C 1.37878 * 120.00041 * 179.97438 * 21 20 19 24 24 N 1.31517 * 119.99639 * 0.02562 * 23 21 20 25 25 Si 1.86795 * 120.00304 * 179.72728 * 23 21 20 26 26 H 1.48505 * 109.46968 * 0.02562 * 25 23 21 27 27 H 1.48504 * 109.47044 * 119.99931 * 25 23 21 28 28 H 1.48503 * 109.47287 * 240.00101 * 25 23 21 29 29 H 1.09009 * 109.46910 * 299.99969 * 1 2 3 30 30 H 1.09001 * 109.47128 * 59.99338 * 1 2 3 31 31 H 1.08993 * 109.47710 * 179.97438 * 1 2 3 32 32 H 1.08992 * 111.03634 * 97.82628 * 7 5 3 33 33 H 1.08997 * 111.03199 * 333.88804 * 7 5 3 34 34 H 1.08995 * 109.47248 * 299.99903 * 14 13 11 35 35 H 1.09004 * 109.47187 * 59.99987 * 14 13 11 36 36 H 1.08996 * 109.47015 * 179.97438 * 14 13 11 37 37 H 1.09005 * 109.47176 * 198.12934 * 18 16 15 38 38 H 1.09001 * 109.47189 * 318.12900 * 18 16 15 39 39 H 1.09001 * 109.47329 * 78.12901 * 18 16 15 40 40 H 1.09001 * 109.47016 * 305.00334 * 19 16 15 41 41 H 1.09003 * 109.47048 * 184.99851 * 19 16 15 42 42 H 1.09001 * 109.46882 * 60.00358 * 20 19 16 43 43 H 1.08995 * 109.47359 * 300.00197 * 20 19 16 44 44 H 0.97007 * 119.99891 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 1 3.9671 0.2612 0.0069 7 6 4.0257 1.9989 1.2863 8 16 5.4812 2.9453 0.6711 9 6 4.7728 3.1897 -1.0102 10 1 4.1158 4.0591 -1.0302 11 6 5.8675 3.3210 -2.0376 12 8 5.7905 4.1662 -2.8976 13 8 6.9278 2.4989 -1.9974 14 6 7.9433 2.6825 -3.0189 15 7 4.0017 1.9440 -1.2208 16 6 2.8691 2.1730 -2.1280 17 1 2.1080 1.4114 -1.9584 18 6 2.2739 3.5570 -1.8613 19 6 3.3531 2.0966 -3.5774 20 6 3.8335 0.6759 -3.8804 21 6 4.3095 0.6006 -5.3083 22 1 4.2735 1.4781 -5.9366 23 6 4.7922 -0.5886 -5.8122 24 7 4.8366 -1.6573 -5.0469 25 14 5.3751 -0.6841 -7.5843 26 1 5.2166 0.6439 -8.2297 27 1 6.8059 -1.0807 -7.6140 28 1 4.5670 -1.6911 -8.3177 29 1 -0.3633 0.5139 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 4.3202 1.2836 2.0542 33 1 3.2503 2.6700 1.6556 34 1 7.4984 2.5388 -4.0035 35 1 8.3515 3.6908 -2.9483 36 1 8.7425 1.9563 -2.8713 37 1 1.2696 3.6078 -2.2819 38 1 2.2270 3.7314 -0.7864 39 1 2.9012 4.3179 -2.3257 40 1 4.1754 2.7971 -3.7233 41 1 2.5333 2.3537 -4.2482 42 1 3.0112 -0.0245 -3.7345 43 1 4.6532 0.4188 -3.2097 44 1 5.1758 -2.4941 -5.4015 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172506808.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:49:24 Heat of formation + Delta-G solvation = -152.118109 kcal Electronic energy + Delta-G solvation = -28844.432363 eV Core-core repulsion = 24889.156450 eV Total energy + Delta-G solvation = -3955.275913 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.133 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.59443 -41.49179 -39.53720 -37.61517 -37.36316 -35.92377 -34.44326 -32.37729 -30.93921 -29.17367 -28.95615 -27.97454 -27.02521 -25.09332 -23.62370 -22.38545 -22.11292 -20.74995 -19.62598 -19.08595 -18.48963 -18.30217 -17.99299 -17.52859 -17.37704 -16.73654 -16.53234 -16.43235 -16.02152 -15.32800 -15.03747 -14.99375 -14.62263 -14.50088 -14.27143 -14.10773 -13.84339 -13.59862 -13.43695 -13.29445 -13.14179 -13.02447 -12.91411 -12.84390 -12.76845 -12.42225 -12.07683 -11.87760 -11.85127 -11.79418 -11.66821 -11.59004 -11.35246 -11.25187 -10.97569 -10.50803 -9.73648 -8.98231 -8.15375 -6.25187 0.03061 0.62438 0.86661 1.11142 1.37036 1.37808 1.50572 1.57364 1.69383 2.36117 2.41475 2.97795 3.16632 3.42913 3.53951 3.66743 3.84617 3.91248 4.02509 4.16717 4.26615 4.26763 4.33634 4.35352 4.37188 4.50311 4.57669 4.63750 4.70725 4.71211 4.76600 4.88944 4.99941 5.22514 5.29792 5.31765 5.43907 5.49510 5.56218 5.83929 5.94837 6.31004 6.54670 6.55985 6.90485 7.42209 8.95652 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.010517 B = 0.005607 C = 0.004236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2661.663998 B = 4992.847887 C = 6608.301711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.361 6.361 3 C 0.458 3.542 4 O -0.508 6.508 5 C 0.094 3.906 6 H 0.134 0.866 7 C -0.065 4.065 8 S -0.208 6.208 9 C 0.123 3.877 10 H 0.141 0.859 11 C 0.495 3.505 12 O -0.521 6.521 13 O -0.338 6.338 14 C 0.031 3.969 15 N -0.516 5.516 16 C 0.084 3.916 17 H 0.073 0.927 18 C -0.172 4.172 19 C -0.099 4.099 20 C 0.047 3.953 21 C -0.542 4.542 22 H 0.044 0.956 23 C 0.010 3.990 24 N -0.922 5.922 25 Si 0.953 3.047 26 H -0.270 1.270 27 H -0.274 1.274 28 H -0.276 1.276 29 H 0.078 0.922 30 H 0.055 0.945 31 H 0.126 0.874 32 H 0.165 0.835 33 H 0.120 0.880 34 H 0.045 0.955 35 H 0.075 0.925 36 H 0.129 0.871 37 H 0.068 0.932 38 H 0.092 0.908 39 H 0.055 0.945 40 H 0.047 0.953 41 H 0.051 0.949 42 H -0.017 1.017 43 H 0.008 0.992 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.187 6.324 16.236 17.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.276 6.276 3 C 0.299 3.701 4 O -0.397 6.397 5 C -0.017 4.017 6 H 0.152 0.848 7 C -0.214 4.214 8 S 0.020 5.980 9 C -0.095 4.095 10 H 0.158 0.842 11 C 0.335 3.665 12 O -0.410 6.410 13 O -0.252 6.252 14 C -0.062 4.062 15 N -0.245 5.245 16 C -0.024 4.024 17 H 0.091 0.909 18 C -0.230 4.230 19 C -0.137 4.137 20 C 0.010 3.990 21 C -0.581 4.581 22 H 0.063 0.937 23 C -0.189 4.189 24 N -0.562 5.562 25 Si 0.778 3.222 26 H -0.195 1.195 27 H -0.200 1.200 28 H -0.201 1.201 29 H 0.096 0.904 30 H 0.074 0.926 31 H 0.144 0.856 32 H 0.183 0.817 33 H 0.138 0.862 34 H 0.064 0.936 35 H 0.094 0.906 36 H 0.147 0.853 37 H 0.087 0.913 38 H 0.110 0.890 39 H 0.074 0.926 40 H 0.066 0.934 41 H 0.070 0.930 42 H 0.001 0.999 43 H 0.027 0.973 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.959 6.716 16.314 17.750 hybrid contribution -1.397 -0.091 -1.788 2.271 sum -3.356 6.624 14.526 16.314 Atomic orbital electron populations 1.23581 0.74398 1.05708 1.02779 1.86576 1.25349 1.32612 1.83087 1.23909 0.92297 0.81979 0.71885 1.90666 1.67346 1.35830 1.45818 1.22379 0.87287 1.03065 0.88955 0.84833 1.24912 0.96963 1.01623 0.97882 1.88294 1.29173 1.73264 1.07271 1.24661 0.93758 0.97384 0.93725 0.84154 1.22818 0.82412 0.77731 0.83490 1.90652 1.78202 1.35960 1.36190 1.86544 1.30692 1.55320 1.52665 1.23523 0.89126 1.04099 0.89475 1.61818 1.25761 1.23678 1.13264 1.22109 0.89649 0.97798 0.92865 0.90937 1.22554 1.01237 0.95474 1.03755 1.21652 0.99551 0.99225 0.93233 1.18745 0.94661 0.90896 0.94690 1.21642 1.42079 0.95698 0.98635 0.93727 1.25791 0.95915 0.95415 1.01752 1.70096 1.47398 1.01155 1.37581 0.85595 0.78309 0.78140 0.80198 1.19488 1.19991 1.20148 0.90357 0.92601 0.85592 0.81718 0.86180 0.93584 0.90587 0.85322 0.91304 0.89009 0.92635 0.93435 0.92989 0.99896 0.97331 0.92851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 10.56 113.37 1.20 1.72 16 2 O -0.36 -9.15 10.55 -51.46 -0.54 -9.69 16 3 C 0.46 11.87 4.15 71.23 0.30 12.17 16 4 O -0.51 -13.74 11.73 21.98 0.26 -13.48 16 5 C 0.09 2.40 3.58 44.88 0.16 2.56 16 6 H 0.13 3.43 8.12 -2.39 -0.02 3.42 16 7 C -0.06 -1.17 7.01 72.51 0.51 -0.66 16 8 S -0.21 -5.12 22.59 -56.49 -1.28 -6.39 16 9 C 0.12 3.83 2.92 85.34 0.25 4.08 16 10 H 0.14 4.13 4.96 -2.39 -0.01 4.12 16 11 C 0.49 18.38 5.91 71.24 0.42 18.80 16 12 O -0.52 -21.44 15.63 21.98 0.34 -21.10 16 13 O -0.34 -12.32 10.18 -51.40 -0.52 -12.85 16 14 C 0.03 0.96 10.56 113.37 1.20 2.15 16 15 N -0.52 -17.01 3.70 -835.23 -3.09 -20.10 16 16 C 0.08 3.01 1.77 44.92 0.08 3.08 16 17 H 0.07 2.68 5.53 -2.39 -0.01 2.67 16 18 C -0.17 -5.21 6.48 71.98 0.47 -4.75 16 19 C -0.10 -4.42 4.53 30.60 0.14 -4.28 16 20 C 0.05 2.57 4.86 29.85 0.15 2.71 16 21 C -0.54 -32.15 9.11 25.60 0.23 -31.91 16 22 H 0.04 2.64 7.74 -2.91 -0.02 2.61 16 23 C 0.01 0.57 5.46 84.65 0.46 1.03 16 24 N -0.92 -56.20 13.29 21.45 0.28 -55.92 16 25 Si 0.95 45.35 29.54 68.60 2.03 47.38 16 26 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 27 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 28 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 29 H 0.08 1.19 8.13 -2.38 -0.02 1.17 16 30 H 0.06 1.14 8.13 -2.39 -0.02 1.12 16 31 H 0.13 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.17 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.12 1.90 7.56 -2.39 -0.02 1.89 16 34 H 0.05 1.65 8.13 -2.39 -0.02 1.64 16 35 H 0.08 2.01 8.13 -2.39 -0.02 1.99 16 36 H 0.13 3.16 8.14 -2.39 -0.02 3.14 16 37 H 0.07 2.01 8.14 -2.38 -0.02 1.99 16 38 H 0.09 2.55 5.35 -2.39 -0.01 2.54 16 39 H 0.05 1.72 7.05 -2.39 -0.02 1.71 16 40 H 0.05 2.24 5.41 -2.39 -0.01 2.22 16 41 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 42 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 43 H 0.01 0.49 7.75 -2.39 -0.02 0.47 16 44 H 0.26 14.97 8.31 -92.70 -0.77 14.20 16 Total: -1.00 -73.58 364.58 4.04 -69.54 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: 1.01 Total: 15.91 kcal Atomic # 6 Polarization: 1.16 SS G_CDS: 5.55 Total: 6.71 kcal Atomic # 7 Polarization: -73.21 SS G_CDS: -2.81 Total: -76.02 kcal Atomic # 8 Polarization: -56.65 SS G_CDS: -0.46 Total: -57.12 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.38 kcal Atomic # 16 Polarization: -5.12 SS G_CDS: -1.28 Total: -6.39 kcal Total: -73.58 4.04 -69.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172506808.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.576 kcal (2) G-P(sol) polarization free energy of solvation -73.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds