Wall clock time and date at job start Tue Mar 31 2020 17:49:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34228 * 117.00224 * 2 1 4 4 O 1.20825 * 119.99444 * 359.97438 * 3 2 1 5 5 C 1.50693 * 120.00192 * 180.02562 * 3 2 1 6 6 H 1.09001 * 109.47813 * 35.68055 * 5 3 2 7 7 C 1.54607 * 109.51479 * 275.59712 * 5 3 2 8 8 S 1.83439 * 103.14063 * 212.08490 * 7 5 3 9 9 C 1.83642 * 96.30412 * 2.22159 * 8 7 5 10 10 H 1.09006 * 110.87264 * 264.43960 * 9 8 7 11 11 C 1.50700 * 110.87111 * 140.96095 * 9 8 7 12 12 O 1.20827 * 120.00420 * 346.95628 * 11 9 8 13 13 O 1.34233 * 120.00044 * 166.96006 * 11 9 8 14 14 C 1.45201 * 116.99939 * 185.16254 * 13 11 9 15 15 N 1.47550 * 109.51620 * 155.76671 * 5 3 2 16 16 C 1.46898 * 111.00152 * 291.09213 * 15 5 3 17 17 H 1.08996 * 109.46896 * 28.21585 * 16 15 5 18 18 C 1.53000 * 109.47448 * 148.21703 * 16 15 5 19 19 C 1.53005 * 109.46824 * 268.21781 * 16 15 5 20 20 C 1.53002 * 109.47247 * 64.86793 * 19 16 15 21 21 C 1.50693 * 109.47093 * 175.55485 * 20 19 16 22 22 H 1.08007 * 119.99948 * 4.86915 * 21 20 19 23 23 C 1.37873 * 120.00322 * 184.86906 * 21 20 19 24 24 N 1.31517 * 119.99497 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 120.00393 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.46907 * 0.02562 * 25 23 21 27 27 H 1.48500 * 109.47146 * 120.00339 * 25 23 21 28 28 H 1.48507 * 109.47090 * 239.99907 * 25 23 21 29 29 H 1.08996 * 109.47596 * 299.99967 * 1 2 3 30 30 H 1.09005 * 109.47048 * 60.00251 * 1 2 3 31 31 H 1.09004 * 109.46967 * 180.02562 * 1 2 3 32 32 H 1.09000 * 110.68419 * 330.49862 * 7 5 3 33 33 H 1.09000 * 110.68493 * 93.67240 * 7 5 3 34 34 H 1.09005 * 109.46886 * 55.33284 * 14 13 11 35 35 H 1.09006 * 109.46937 * 175.32912 * 14 13 11 36 36 H 1.08996 * 109.47435 * 295.32957 * 14 13 11 37 37 H 1.09000 * 109.46984 * 308.37157 * 18 16 15 38 38 H 1.08999 * 109.46996 * 68.36713 * 18 16 15 39 39 H 1.08998 * 109.47290 * 188.37527 * 18 16 15 40 40 H 1.09001 * 109.46668 * 184.86937 * 19 16 15 41 41 H 1.09001 * 109.47041 * 304.86237 * 19 16 15 42 42 H 1.09004 * 109.46695 * 295.55761 * 20 19 16 43 43 H 1.09000 * 109.46828 * 55.55144 * 20 19 16 44 44 H 0.97008 * 120.00188 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2092 -0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9727 0.4604 -0.6003 7 6 4.0901 1.1596 1.4495 8 16 5.6038 2.1956 1.4297 9 6 5.4486 2.7460 -0.3154 10 1 6.0427 2.1145 -0.9761 11 6 5.8455 4.1926 -0.4594 12 8 5.9759 4.8841 0.5228 13 8 6.0542 4.7132 -1.6790 14 6 6.5451 6.0784 -1.7378 15 7 3.9919 2.5672 -0.5713 16 6 3.6984 2.6299 -2.0093 17 1 2.8389 1.9979 -2.2325 18 6 3.3851 4.0747 -2.4034 19 6 4.9125 2.1375 -2.7996 20 6 5.1521 0.6570 -2.4966 21 6 6.2787 0.1443 -3.3561 22 1 6.8262 0.8249 -3.9913 23 6 6.6106 -1.1937 -3.3316 24 7 5.9436 -2.0225 -2.5584 25 14 8.0067 -1.8294 -4.3975 26 1 8.5920 -0.7040 -5.1695 27 1 9.0529 -2.4339 -3.5342 28 1 7.4854 -2.8558 -5.3357 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 3.3606 1.5573 2.1551 33 1 4.3348 0.1249 1.6894 34 1 7.4621 6.1602 -1.1543 35 1 6.7489 6.3468 -2.7745 36 1 5.7929 6.7530 -1.3290 37 1 2.6192 4.4746 -1.7390 38 1 4.2891 4.6780 -2.3205 39 1 3.0238 4.1007 -3.4315 40 1 4.7277 2.2648 -3.8662 41 1 5.7916 2.7142 -2.5118 42 1 5.4144 0.5392 -1.4452 43 1 4.2453 0.0911 -2.7104 44 1 6.1773 -2.9639 -2.5408 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172506809.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:49:28 Heat of formation + Delta-G solvation = -132.357179 kcal Electronic energy + Delta-G solvation = -28787.569405 eV Core-core repulsion = 24833.150390 eV Total energy + Delta-G solvation = -3954.419015 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.133 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.93259 -40.28482 -38.52153 -36.41326 -36.25551 -33.86881 -32.79961 -30.56650 -29.85054 -28.10684 -27.75926 -26.52814 -25.15970 -23.95720 -22.03933 -21.12367 -20.32119 -19.58503 -18.10296 -17.75524 -17.36162 -16.57781 -16.37125 -16.31215 -16.03543 -15.95257 -15.16330 -14.61569 -14.48539 -14.04947 -13.86498 -13.38168 -13.17926 -13.04345 -12.94932 -12.63333 -12.46880 -12.33951 -12.20864 -11.95709 -11.85446 -11.72467 -11.43988 -11.32245 -11.00531 -10.79748 -10.72114 -10.61437 -10.54893 -10.45514 -10.13249 -9.98755 -9.93088 -9.43941 -9.36663 -8.49318 -8.31392 -7.54232 -6.12184 -4.15335 1.47187 2.00856 2.03801 2.37393 2.71241 2.90354 3.24896 3.33483 3.36801 3.84765 4.36654 4.43668 4.75894 4.81142 5.04277 5.10531 5.12908 5.17590 5.20149 5.21057 5.24536 5.30329 5.50247 5.50662 5.53702 5.54996 5.69481 5.78160 6.02401 6.12793 6.17948 6.36398 6.39969 6.46305 6.53580 6.74956 6.86051 6.90595 7.39215 7.51563 7.80778 7.84112 7.84834 8.25744 8.89907 9.50417 10.98468 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.008512 B = 0.006215 C = 0.004529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3288.790377 B = 4504.503947 C = 6180.728024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.352 6.352 3 C 0.478 3.522 4 O -0.483 6.483 5 C 0.058 3.942 6 H 0.132 0.868 7 C -0.067 4.067 8 S -0.189 6.189 9 C 0.098 3.902 10 H 0.153 0.847 11 C 0.495 3.505 12 O -0.481 6.481 13 O -0.339 6.339 14 C 0.033 3.967 15 N -0.485 5.485 16 C 0.073 3.927 17 H 0.074 0.926 18 C -0.152 4.152 19 C -0.150 4.150 20 C 0.010 3.990 21 C -0.522 4.522 22 H 0.058 0.942 23 C 0.061 3.939 24 N -0.891 5.891 25 Si 0.891 3.109 26 H -0.272 1.272 27 H -0.283 1.283 28 H -0.284 1.284 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.102 0.898 32 H 0.102 0.898 33 H 0.120 0.880 34 H 0.062 0.938 35 H 0.102 0.898 36 H 0.063 0.937 37 H 0.056 0.944 38 H 0.075 0.925 39 H 0.057 0.943 40 H 0.068 0.932 41 H 0.071 0.929 42 H 0.015 0.985 43 H 0.022 0.978 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.078 8.014 4.222 10.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.268 6.268 3 C 0.318 3.682 4 O -0.368 6.368 5 C -0.052 4.052 6 H 0.149 0.851 7 C -0.216 4.216 8 S 0.040 5.960 9 C -0.120 4.120 10 H 0.169 0.831 11 C 0.333 3.667 12 O -0.365 6.365 13 O -0.255 6.255 14 C -0.061 4.061 15 N -0.214 5.214 16 C -0.036 4.036 17 H 0.092 0.908 18 C -0.209 4.209 19 C -0.189 4.189 20 C -0.027 4.027 21 C -0.561 4.561 22 H 0.076 0.924 23 C -0.141 4.141 24 N -0.529 5.529 25 Si 0.719 3.281 26 H -0.197 1.197 27 H -0.209 1.209 28 H -0.210 1.210 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.120 0.880 32 H 0.121 0.879 33 H 0.139 0.861 34 H 0.081 0.919 35 H 0.121 0.879 36 H 0.082 0.918 37 H 0.075 0.925 38 H 0.094 0.906 39 H 0.076 0.924 40 H 0.087 0.913 41 H 0.089 0.911 42 H 0.033 0.967 43 H 0.040 0.960 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.728 9.017 5.704 12.110 hybrid contribution 0.025 -1.175 -1.851 2.192 sum -5.703 7.843 3.853 10.435 Atomic orbital electron populations 1.23266 0.76286 1.03739 1.02387 1.86559 1.23305 1.32875 1.84026 1.22961 0.90726 0.81599 0.72952 1.90660 1.66436 1.36141 1.43560 1.22418 0.89750 0.95536 0.97509 0.85058 1.24128 0.97504 1.03700 0.96313 1.87771 1.33452 1.60316 1.14500 1.24961 0.94542 0.94270 0.98264 0.83052 1.22544 0.73784 0.88903 0.81496 1.90674 1.46412 1.60314 1.39116 1.86614 1.76270 1.31347 1.31298 1.23304 0.99467 0.79719 1.03653 1.64237 1.10132 1.29864 1.17180 1.22043 0.99276 0.98233 0.84035 0.90803 1.22056 1.02863 0.95587 1.00388 1.22523 0.96023 0.99975 1.00344 1.19435 0.97690 0.89116 0.96441 1.21170 1.16401 0.93424 1.25055 0.92390 1.24995 0.96560 0.97031 0.95523 1.69941 1.40424 1.03931 1.38630 0.86552 0.82239 0.78932 0.80414 1.19706 1.20916 1.21018 0.92013 0.91885 0.87969 0.87938 0.86124 0.91873 0.87947 0.91847 0.92450 0.90620 0.92401 0.91348 0.91075 0.96732 0.95964 0.92880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.41 10.56 101.05 1.07 1.47 16 2 O -0.35 -5.26 10.57 -39.25 -0.41 -5.68 16 3 C 0.48 7.86 5.89 36.00 0.21 8.07 16 4 O -0.48 -8.69 16.15 -18.75 -0.30 -8.99 16 5 C 0.06 0.97 2.21 -67.67 -0.15 0.82 16 6 H 0.13 2.48 4.82 -51.93 -0.25 2.23 16 7 C -0.07 -1.00 6.99 38.00 0.27 -0.74 16 8 S -0.19 -3.22 22.18 -107.50 -2.38 -5.61 16 9 C 0.10 1.74 2.18 -3.82 -0.01 1.74 16 10 H 0.15 2.92 4.10 -51.93 -0.21 2.71 16 11 C 0.49 8.53 6.74 36.01 0.24 8.77 16 12 O -0.48 -9.02 15.82 -18.75 -0.30 -9.31 16 13 O -0.34 -5.09 5.72 -39.27 -0.22 -5.31 16 14 C 0.03 0.36 10.57 101.05 1.07 1.43 16 15 N -0.49 -8.44 3.98 -213.45 -0.85 -9.29 16 16 C 0.07 1.27 2.12 -67.71 -0.14 1.12 16 17 H 0.07 1.33 6.90 -51.93 -0.36 0.98 16 18 C -0.15 -2.33 9.12 37.16 0.34 -1.99 16 19 C -0.15 -2.85 3.98 -26.73 -0.11 -2.96 16 20 C 0.01 0.22 3.09 -27.89 -0.09 0.13 16 21 C -0.52 -13.64 9.11 -34.45 -0.31 -13.95 16 22 H 0.06 1.49 7.75 -52.48 -0.41 1.09 16 23 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 24 N -0.89 -24.80 13.29 55.43 0.74 -24.06 16 25 Si 0.89 20.67 29.54 -169.99 -5.02 15.65 16 26 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 27 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 28 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 29 H 0.06 0.62 8.13 -51.93 -0.42 0.20 16 30 H 0.06 0.68 8.13 -51.93 -0.42 0.26 16 31 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.10 1.40 7.90 -51.93 -0.41 0.99 16 33 H 0.12 1.59 8.14 -51.93 -0.42 1.16 16 34 H 0.06 0.67 8.10 -51.93 -0.42 0.25 16 35 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.08 1.14 4.35 -51.93 -0.23 0.91 16 39 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 41 H 0.07 1.33 4.21 -51.93 -0.22 1.12 16 42 H 0.01 0.35 4.52 -51.93 -0.23 0.11 16 43 H 0.02 0.55 8.02 -51.93 -0.42 0.14 16 44 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 358.81 15.07 5.41 5.41 Total: -1.00 -31.17 358.81 -7.15 -38.33 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -6.09 Total: 3.42 kcal Atomic # 6 Polarization: 3.17 SS G_CDS: 2.29 Total: 5.46 kcal Atomic # 7 Polarization: -33.24 SS G_CDS: -0.11 Total: -33.35 kcal Atomic # 8 Polarization: -28.06 SS G_CDS: -1.24 Total: -29.30 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Atomic # 16 Polarization: -3.22 SS G_CDS: -2.38 Total: -5.61 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.17 -7.15 -38.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172506809.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.030 kcal (2) G-P(sol) polarization free energy of solvation -31.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds