Wall clock time and date at job start Tue Mar 31 2020 17:49:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34233 * 116.99730 * 2 1 4 4 O 1.20827 * 119.99646 * 0.02562 * 3 2 1 5 5 C 1.50696 * 120.00108 * 179.97438 * 3 2 1 6 6 H 1.09007 * 109.97110 * 31.14693 * 5 3 2 7 7 C 1.55397 * 109.87103 * 270.09529 * 5 3 2 8 8 S 1.83757 * 100.95556 * 199.16578 * 7 5 3 9 9 C 1.83304 * 96.34092 * 21.47954 * 8 7 5 10 10 H 1.08996 * 110.52798 * 244.22052 * 9 8 7 11 11 C 1.50702 * 110.42211 * 121.80056 * 9 8 7 12 12 O 1.20825 * 119.99575 * 341.41670 * 11 9 8 13 13 O 1.34225 * 120.00179 * 161.41367 * 11 9 8 14 14 C 1.45203 * 117.00218 * 179.97438 * 13 11 9 15 15 N 1.47527 * 109.87264 * 152.20105 * 5 3 2 16 16 C 1.46900 * 111.00240 * 291.84411 * 15 5 3 17 17 H 1.09004 * 109.46756 * 31.15511 * 16 15 5 18 18 C 1.52998 * 109.46935 * 271.16154 * 16 15 5 19 19 C 1.52994 * 109.47215 * 151.15860 * 16 15 5 20 20 C 1.52994 * 109.47368 * 300.67076 * 19 16 15 21 21 C 1.50701 * 109.47510 * 177.87752 * 20 19 16 22 22 H 1.08009 * 119.99482 * 0.02562 * 21 20 19 23 23 C 1.37869 * 120.00620 * 180.02562 * 21 20 19 24 24 N 1.31516 * 119.99627 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 120.00510 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47258 * 179.97438 * 25 23 21 27 27 H 1.48495 * 109.46694 * 299.99429 * 25 23 21 28 28 H 1.48497 * 109.47315 * 59.99613 * 25 23 21 29 29 H 1.09000 * 109.47388 * 299.99847 * 1 2 3 30 30 H 1.08993 * 109.47448 * 59.99959 * 1 2 3 31 31 H 1.09009 * 109.46914 * 179.97438 * 1 2 3 32 32 H 1.09005 * 111.12117 * 81.23961 * 7 5 3 33 33 H 1.08997 * 111.15555 * 317.10858 * 7 5 3 34 34 H 1.08999 * 109.46693 * 60.00478 * 14 13 11 35 35 H 1.08996 * 109.46933 * 179.97438 * 14 13 11 36 36 H 1.08994 * 109.47260 * 300.00841 * 14 13 11 37 37 H 1.09003 * 109.46786 * 290.82887 * 18 16 15 38 38 H 1.09002 * 109.47446 * 50.82089 * 18 16 15 39 39 H 1.09002 * 109.47304 * 170.82616 * 18 16 15 40 40 H 1.09003 * 109.46843 * 180.67246 * 19 16 15 41 41 H 1.09001 * 109.47317 * 60.67454 * 19 16 15 42 42 H 1.09007 * 109.47346 * 57.87704 * 20 19 16 43 43 H 1.08996 * 109.47290 * 297.87709 * 20 19 16 44 44 H 0.96997 * 120.00118 * 0.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5662 1.2750 0.0006 6 1 3.9842 0.4188 -0.5290 7 6 4.0933 1.3006 1.4622 8 16 5.7813 1.9826 1.2130 9 6 5.4443 2.7695 -0.4079 10 1 6.0431 2.3039 -1.1907 11 6 5.7247 4.2488 -0.3427 12 8 5.7849 4.8056 0.7279 13 8 5.9077 4.9477 -1.4739 14 6 6.1731 6.3685 -1.3354 15 7 4.0030 2.5268 -0.6465 16 6 3.7032 2.5085 -2.0845 17 1 2.8051 1.9165 -2.2608 18 6 4.8790 1.8895 -2.8428 19 6 3.4756 3.9393 -2.5763 20 6 2.3105 4.5640 -1.8063 21 6 2.1199 5.9904 -2.2538 22 1 2.7650 6.4092 -3.0120 23 6 1.1220 6.7606 -1.6955 24 7 0.3361 6.2504 -0.7726 25 14 0.8852 8.5284 -2.2507 26 1 -0.2456 9.1348 -1.5032 27 1 2.1254 9.3008 -1.9853 28 1 0.5873 8.5548 -3.7052 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0278 -0.0005 32 1 4.1337 0.2957 1.8828 33 1 3.4909 1.9609 2.0861 34 1 7.0821 6.5130 -0.7516 35 1 6.3014 6.8121 -2.3227 36 1 5.3355 6.8468 -0.8277 37 1 5.7339 2.5645 -2.8013 38 1 5.1458 0.9370 -2.3847 39 1 4.5953 1.7259 -3.8824 40 1 3.2414 3.9246 -3.6407 41 1 4.3779 4.5282 -2.4108 42 1 2.5285 4.5443 -0.7384 43 1 1.4003 3.9972 -2.0018 44 1 0.4587 5.3323 -0.4845 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172506810.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:49:33 Heat of formation + Delta-G solvation = -162.258026 kcal Electronic energy + Delta-G solvation = -29000.095801 eV Core-core repulsion = 25044.380188 eV Total energy + Delta-G solvation = -3955.715613 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.133 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.11203 -41.47929 -39.69065 -37.65286 -37.49801 -36.08221 -34.46745 -32.24873 -30.65663 -29.25148 -28.85181 -27.88218 -26.58430 -25.21975 -23.70757 -22.58711 -21.80776 -20.85286 -19.27624 -19.10106 -18.73717 -18.56435 -17.64661 -17.49064 -17.41906 -17.28920 -16.56483 -16.00565 -15.66581 -15.57558 -15.01328 -14.93843 -14.51699 -14.38224 -14.25221 -14.16877 -14.00924 -13.87425 -13.54960 -13.38443 -13.21498 -12.96831 -12.91467 -12.68199 -12.49579 -12.07943 -12.02695 -11.99735 -11.91199 -11.86412 -11.77716 -11.56886 -11.30233 -11.09249 -10.53719 -10.44954 -9.70817 -8.97825 -8.59739 -6.28435 0.11043 0.64552 0.71312 1.13884 1.45981 1.55737 1.56849 1.71896 1.74666 2.45426 2.58457 3.06279 3.24718 3.53725 3.59530 3.61864 3.67472 3.81486 4.05198 4.17576 4.22585 4.24915 4.25485 4.27643 4.33430 4.43378 4.63536 4.67008 4.68527 4.71629 4.79647 4.97030 5.07195 5.21547 5.26634 5.34150 5.37997 5.51166 5.68212 5.85136 6.13984 6.33719 6.58416 6.66887 6.70566 7.56003 8.79806 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.009963 B = 0.006152 C = 0.004504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2809.809379 B = 4550.294009 C = 6215.550146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.351 6.351 3 C 0.461 3.539 4 O -0.502 6.502 5 C 0.090 3.910 6 H 0.140 0.860 7 C -0.060 4.060 8 S -0.197 6.197 9 C 0.115 3.885 10 H 0.163 0.837 11 C 0.476 3.524 12 O -0.513 6.513 13 O -0.342 6.342 14 C 0.034 3.966 15 N -0.530 5.530 16 C 0.086 3.914 17 H 0.064 0.936 18 C -0.178 4.178 19 C -0.111 4.111 20 C 0.047 3.953 21 C -0.612 4.612 22 H 0.049 0.951 23 C -0.047 4.047 24 N -0.943 5.943 25 Si 1.113 2.887 26 H -0.288 1.288 27 H -0.267 1.267 28 H -0.265 1.265 29 H 0.056 0.944 30 H 0.048 0.952 31 H 0.146 0.854 32 H 0.171 0.829 33 H 0.085 0.915 34 H 0.077 0.923 35 H 0.131 0.869 36 H 0.036 0.964 37 H 0.075 0.925 38 H 0.086 0.914 39 H 0.085 0.915 40 H 0.051 0.949 41 H 0.088 0.912 42 H -0.011 1.011 43 H -0.040 1.040 44 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.993 -16.788 -1.674 20.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.267 6.267 3 C 0.300 3.700 4 O -0.387 6.387 5 C -0.020 4.020 6 H 0.157 0.843 7 C -0.209 4.209 8 S 0.033 5.967 9 C -0.104 4.104 10 H 0.179 0.821 11 C 0.315 3.685 12 O -0.399 6.399 13 O -0.258 6.258 14 C -0.059 4.059 15 N -0.259 5.259 16 C -0.022 4.022 17 H 0.083 0.917 18 C -0.236 4.236 19 C -0.148 4.148 20 C 0.010 3.990 21 C -0.650 4.650 22 H 0.067 0.933 23 C -0.243 4.243 24 N -0.581 5.581 25 Si 0.934 3.066 26 H -0.214 1.214 27 H -0.193 1.193 28 H -0.190 1.190 29 H 0.074 0.926 30 H 0.067 0.933 31 H 0.164 0.836 32 H 0.189 0.811 33 H 0.103 0.897 34 H 0.096 0.904 35 H 0.149 0.851 36 H 0.055 0.945 37 H 0.093 0.907 38 H 0.104 0.896 39 H 0.104 0.896 40 H 0.070 0.930 41 H 0.106 0.894 42 H 0.007 0.993 43 H -0.022 1.022 44 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 11.630 -14.617 -0.196 18.681 hybrid contribution -0.691 -1.111 -0.842 1.556 sum 10.940 -15.729 -1.039 19.187 Atomic orbital electron populations 1.23529 0.74755 1.05907 1.01931 1.86436 1.24683 1.31528 1.84082 1.23368 0.91468 0.81818 0.73320 1.90916 1.67135 1.37562 1.43057 1.22345 0.88749 0.94034 0.96851 0.84272 1.24531 0.93584 1.07265 0.95498 1.87771 1.15832 1.65948 1.27186 1.24499 0.93370 0.91437 1.01076 0.82078 1.23387 0.72334 0.90516 0.82304 1.90663 1.46429 1.71341 1.31503 1.86418 1.80530 1.24668 1.34174 1.23458 1.00868 0.76114 1.05458 1.62440 1.12583 1.35222 1.15654 1.21907 0.98853 0.97989 0.83466 0.91729 1.22445 0.97594 1.01363 1.02179 1.21849 1.00450 0.94469 0.98041 1.18698 0.92134 0.93506 0.94637 1.22598 1.18474 0.99594 1.24372 0.93277 1.27413 0.93137 1.09476 0.94300 1.70840 1.40101 1.16715 1.30399 0.83037 0.76823 0.70324 0.76444 1.21373 1.19255 1.19028 0.92558 0.93344 0.83634 0.81114 0.89660 0.90441 0.85094 0.94461 0.90659 0.89558 0.89605 0.92993 0.89398 0.99309 1.02220 0.93778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.69 10.56 113.37 1.20 1.89 16 2 O -0.35 -8.66 10.57 -51.45 -0.54 -9.21 16 3 C 0.46 14.58 5.94 71.23 0.42 15.01 16 4 O -0.50 -22.29 15.52 21.96 0.34 -21.95 16 5 C 0.09 2.30 2.52 44.87 0.11 2.41 16 6 H 0.14 2.36 7.56 -2.38 -0.02 2.35 16 7 C -0.06 -1.38 6.97 72.81 0.51 -0.87 16 8 S -0.20 -5.14 22.10 -56.49 -1.25 -6.39 16 9 C 0.11 3.34 2.87 85.33 0.24 3.58 16 10 H 0.16 3.49 4.87 -2.39 -0.01 3.48 16 11 C 0.48 17.50 6.99 71.24 0.50 18.00 16 12 O -0.51 -22.25 15.86 21.97 0.35 -21.90 16 13 O -0.34 -11.68 7.40 -51.37 -0.38 -12.06 16 14 C 0.03 1.06 10.56 113.37 1.20 2.26 16 15 N -0.53 -17.32 3.02 -830.61 -2.51 -19.83 16 16 C 0.09 2.77 2.11 44.91 0.09 2.87 16 17 H 0.06 2.20 6.90 -2.39 -0.02 2.18 16 18 C -0.18 -3.66 7.78 71.98 0.56 -3.09 16 19 C -0.11 -4.69 4.55 30.59 0.14 -4.55 16 20 C 0.05 2.68 3.58 29.85 0.11 2.79 16 21 C -0.61 -37.43 9.11 25.60 0.23 -37.20 16 22 H 0.05 2.86 7.74 -2.91 -0.02 2.83 16 23 C -0.05 -2.94 5.46 84.65 0.46 -2.47 16 24 N -0.94 -64.66 13.65 21.44 0.29 -64.37 16 25 Si 1.11 53.94 29.90 68.60 2.05 55.99 16 26 H -0.29 -14.07 7.11 99.48 0.71 -13.37 16 27 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 28 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 29 H 0.06 1.32 8.13 -2.39 -0.02 1.30 16 30 H 0.05 1.22 8.13 -2.39 -0.02 1.20 16 31 H 0.15 1.79 8.14 -2.38 -0.02 1.77 16 32 H 0.17 2.31 8.14 -2.38 -0.02 2.29 16 33 H 0.08 2.43 8.10 -2.39 -0.02 2.41 16 34 H 0.08 2.04 8.13 -2.39 -0.02 2.02 16 35 H 0.13 3.15 8.14 -2.39 -0.02 3.13 16 36 H 0.04 1.41 8.13 -2.39 -0.02 1.40 16 37 H 0.07 1.52 6.63 -2.39 -0.02 1.51 16 38 H 0.09 1.25 7.35 -2.39 -0.02 1.23 16 39 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 41 H 0.09 3.66 4.15 -2.39 -0.01 3.65 16 42 H -0.01 -0.73 7.29 -2.38 -0.02 -0.75 16 43 H -0.04 -2.57 7.88 -2.39 -0.02 -2.59 16 44 H 0.25 18.18 7.22 -92.71 -0.67 17.51 16 Total: -1.00 -89.30 367.28 5.23 -84.06 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: 1.11 Total: 15.04 kcal Atomic # 6 Polarization: -5.16 SS G_CDS: 5.78 Total: 0.61 kcal Atomic # 7 Polarization: -81.98 SS G_CDS: -2.22 Total: -84.20 kcal Atomic # 8 Polarization: -64.89 SS G_CDS: -0.23 Total: -65.12 kcal Atomic # 14 Polarization: 53.94 SS G_CDS: 2.05 Total: 55.99 kcal Atomic # 16 Polarization: -5.14 SS G_CDS: -1.25 Total: -6.39 kcal Total: -89.30 5.23 -84.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172506810.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.195 kcal (2) G-P(sol) polarization free energy of solvation -89.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds