Wall clock time and date at job start Tue Mar 31 2020 16:49:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42904 * 109.46697 * 2 1 4 4 C 1.53000 * 109.47210 * 119.99357 * 2 1 3 5 5 C 1.50698 * 109.47326 * 303.31149 * 4 2 1 6 6 O 1.21284 * 120.00099 * 353.97905 * 5 4 2 7 7 N 1.34779 * 119.99824 * 173.97753 * 5 4 2 8 8 C 1.37099 * 120.00264 * 0.02562 * 7 5 4 9 9 H 1.08005 * 119.99496 * 356.75568 * 8 7 5 10 10 C 1.38943 * 120.00264 * 176.75684 * 8 7 5 11 11 N 1.31411 * 119.99928 * 36.28211 * 10 8 7 12 12 Si 1.86802 * 120.00095 * 216.27730 * 10 8 7 13 13 H 1.48492 * 109.47240 * 0.02562 * 12 10 8 14 14 H 1.48495 * 109.46839 * 120.00244 * 12 10 8 15 15 H 1.48503 * 109.46905 * 240.00132 * 12 10 8 16 16 C 1.46503 * 119.99879 * 179.97438 * 7 5 4 17 17 C 1.50706 * 109.46653 * 82.52821 * 16 7 5 18 18 C 1.38237 * 119.99899 * 305.08635 * 17 16 7 19 19 C 1.38236 * 119.99575 * 179.77305 * 18 17 16 20 20 C 1.38237 * 120.00250 * 0.50187 * 19 18 17 21 21 C 1.38237 * 119.99427 * 359.75168 * 20 19 18 22 22 C 1.38230 * 120.00773 * 359.97438 * 21 20 19 23 23 C 1.52999 * 109.47641 * 240.00266 * 2 1 3 24 24 F 1.39891 * 109.47301 * 179.97438 * 23 2 1 25 25 F 1.39901 * 109.46408 * 299.99788 * 23 2 1 26 26 F 1.39904 * 109.47280 * 59.99076 * 23 2 1 27 27 H 1.09002 * 109.47045 * 53.59690 * 1 2 3 28 28 H 1.08998 * 109.46451 * 173.59426 * 1 2 3 29 29 H 1.08997 * 109.46888 * 293.58712 * 1 2 3 30 30 H 0.96703 * 114.00264 * 179.97438 * 3 2 1 31 31 H 1.08999 * 109.46752 * 63.31264 * 4 2 1 32 32 H 1.09004 * 109.46920 * 183.30808 * 4 2 1 33 33 H 0.97000 * 120.00532 * 179.97438 * 11 10 8 34 34 H 1.08996 * 109.46651 * 202.52229 * 16 7 5 35 35 H 1.08995 * 109.47090 * 322.52636 * 16 7 5 36 36 H 1.07997 * 119.99957 * 359.97438 * 18 17 16 37 37 H 1.08001 * 119.99696 * 180.22565 * 19 18 17 38 38 H 1.07997 * 119.99988 * 179.72872 * 20 19 18 39 39 H 1.07998 * 119.99125 * 179.97438 * 21 20 19 40 40 H 1.07992 * 120.00445 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 2.0401 -0.7211 1.2493 5 6 1.4719 -0.0596 2.4784 6 8 0.8215 0.9587 2.3732 7 7 1.6865 -0.5995 3.6945 8 6 2.4222 -1.7503 3.8135 9 1 2.7853 -2.2529 2.9291 10 6 2.7005 -2.2700 5.0716 11 7 1.8039 -2.1891 6.0290 12 14 4.3490 -3.0840 5.4022 13 1 5.1756 -3.0466 4.1693 14 1 5.0507 -2.3567 6.4903 15 1 4.1313 -4.4951 5.8103 16 6 1.1346 0.0439 4.8893 17 6 -0.3049 -0.3675 5.0617 18 6 -1.2060 -0.1783 4.0306 19 6 -2.5254 -0.5599 4.1871 20 6 -2.9460 -1.1211 5.3784 21 6 -2.0460 -1.3054 6.4113 22 6 -0.7254 -0.9290 6.2529 23 6 2.0402 -0.7212 -1.2492 24 9 3.4391 -0.7206 -1.2494 25 9 1.5739 -2.0402 -1.2491 26 9 1.5737 -0.0618 -2.3916 27 1 -0.3633 0.6099 -0.8271 28 1 -0.3632 -1.0213 -0.1147 29 1 -0.3633 0.4112 0.9418 30 1 2.9703 1.4238 0.0004 31 1 1.7260 -1.7645 1.2202 32 1 3.1285 -0.6700 1.2794 33 1 1.9979 -2.5522 6.9072 34 1 1.7074 -0.2629 5.7645 35 1 1.1924 1.1266 4.7784 36 1 -0.8785 0.2646 3.1017 37 1 -3.2286 -0.4155 3.3802 38 1 -3.9778 -1.4152 5.5021 39 1 -2.3747 -1.7435 7.3421 40 1 -0.0224 -1.0726 7.0600 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001179807458.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:49:12 Heat of formation + Delta-G solvation = -192.805848 kcal Electronic energy + Delta-G solvation = -30203.951949 eV Core-core repulsion = 25569.610991 eV Total energy + Delta-G solvation = -4634.340957 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.118 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -50.00951 -47.52627 -47.46021 -39.52094 -38.19003 -36.96347 -34.97653 -32.24359 -31.85824 -30.88480 -29.97310 -27.86335 -26.22418 -25.63551 -24.37038 -21.66112 -21.28905 -20.42271 -19.28779 -18.64649 -18.27587 -18.11726 -17.05511 -16.14337 -15.98360 -15.29890 -15.03714 -14.48808 -14.42691 -14.38616 -14.32872 -14.18148 -13.92626 -13.82616 -13.68464 -13.64232 -13.60289 -13.23124 -12.63877 -12.54076 -12.26590 -12.06385 -11.95063 -11.75150 -11.59338 -11.44260 -11.07957 -10.92957 -10.81984 -10.58087 -10.49260 -10.32665 -10.07756 -9.95379 -8.97228 -8.50578 -8.07629 -7.99561 -7.77897 -6.66338 -3.94608 2.22140 2.31299 2.79878 2.97855 3.14958 3.17900 3.65434 3.78978 3.89224 3.98048 4.12955 4.56178 4.58090 4.72763 4.91967 4.98291 5.15703 5.63753 5.71850 5.79649 5.89582 5.94732 5.98393 6.06096 6.14790 6.16933 6.42355 6.46988 6.61687 6.70606 6.84500 6.90001 7.08241 7.26438 7.33800 7.37351 7.51100 7.60462 7.73577 7.92541 8.19547 8.89283 9.33702 9.75681 10.33046 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.011167 B = 0.005280 C = 0.003988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2506.818077 B = 5302.040319 C = 7019.357254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.125 3.875 3 O -0.511 6.511 4 C -0.153 4.153 5 C 0.455 3.545 6 O -0.585 6.585 7 N -0.425 5.425 8 C -0.357 4.357 9 H 0.104 0.896 10 C 0.053 3.947 11 N -0.826 5.826 12 Si 0.899 3.101 13 H -0.267 1.267 14 H -0.278 1.278 15 H -0.282 1.282 16 C 0.154 3.846 17 C -0.057 4.057 18 C -0.119 4.119 19 C -0.142 4.142 20 C -0.137 4.137 21 C -0.145 4.145 22 C -0.067 4.067 23 C 0.418 3.582 24 F -0.187 7.187 25 F -0.179 7.179 26 F -0.180 7.180 27 H 0.065 0.935 28 H 0.070 0.930 29 H 0.120 0.880 30 H 0.375 0.625 31 H 0.100 0.900 32 H 0.093 0.907 33 H 0.271 0.729 34 H 0.115 0.885 35 H 0.056 0.944 36 H 0.140 0.860 37 H 0.106 0.894 38 H 0.104 0.896 39 H 0.106 0.894 40 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.842 0.996 -5.145 5.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.081 3.919 3 O -0.315 6.315 4 C -0.193 4.193 5 C 0.244 3.756 6 O -0.473 6.473 7 N -0.141 5.141 8 C -0.483 4.483 9 H 0.121 0.879 10 C -0.155 4.155 11 N -0.461 5.461 12 Si 0.725 3.275 13 H -0.191 1.191 14 H -0.203 1.203 15 H -0.209 1.209 16 C 0.031 3.969 17 C -0.058 4.058 18 C -0.137 4.137 19 C -0.160 4.160 20 C -0.156 4.156 21 C -0.163 4.163 22 C -0.086 4.086 23 C 0.364 3.636 24 F -0.169 7.169 25 F -0.161 7.161 26 F -0.161 7.161 27 H 0.084 0.916 28 H 0.089 0.911 29 H 0.138 0.862 30 H 0.222 0.778 31 H 0.118 0.882 32 H 0.112 0.888 33 H 0.081 0.919 34 H 0.133 0.867 35 H 0.074 0.926 36 H 0.157 0.843 37 H 0.124 0.876 38 H 0.122 0.878 39 H 0.124 0.876 40 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -1.797 1.536 -4.985 5.517 hybrid contribution 1.579 -1.254 -0.049 2.017 sum -0.217 0.282 -5.034 5.047 Atomic orbital electron populations 1.22130 0.89187 1.02817 1.07181 1.22065 0.98334 0.83501 0.88025 1.86793 1.26514 1.22213 1.95993 1.22131 1.02571 1.01507 0.93079 1.19240 0.85567 0.86988 0.83810 1.90473 1.44781 1.26563 1.85492 1.43807 1.44208 1.22177 1.03950 1.19576 1.30123 1.04296 0.94268 0.87863 1.25110 0.97869 0.96843 0.95678 1.70317 1.30321 1.40801 1.04689 0.86343 0.83630 0.78576 0.78980 1.19100 1.20322 1.20865 1.20631 0.90697 0.94882 0.90683 1.20211 0.95506 0.96730 0.93310 1.21797 0.92763 0.98783 1.00396 1.20982 0.96311 1.01522 0.97211 1.20905 0.98608 1.01654 0.94399 1.21002 0.94277 1.02542 0.98483 1.21073 0.94232 0.95221 0.98025 1.21956 0.75506 0.78280 0.87881 1.93148 1.30435 1.96379 1.96889 1.93167 1.88382 1.37743 1.96808 1.93163 1.88366 1.80720 1.53899 0.91572 0.91107 0.86220 0.77752 0.88195 0.88831 0.91884 0.86692 0.92617 0.84294 0.87594 0.87772 0.87569 0.85679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.54 8.32 37.16 0.31 -2.23 16 2 C 0.12 2.00 0.48 -90.62 -0.04 1.96 16 3 O -0.51 -8.30 11.90 -52.99 -0.63 -8.93 16 4 C -0.15 -2.69 3.18 -27.88 -0.09 -2.78 16 5 C 0.45 9.60 6.26 -10.99 -0.07 9.53 16 6 O -0.59 -13.08 10.31 -12.20 -0.13 -13.20 16 7 N -0.43 -9.58 2.59 -116.10 -0.30 -9.88 16 8 C -0.36 -8.19 9.20 -14.93 -0.14 -8.33 16 9 H 0.10 2.28 6.47 -52.48 -0.34 1.94 16 10 C 0.05 1.20 4.81 -17.47 -0.08 1.11 16 11 N -0.83 -18.84 8.27 55.50 0.46 -18.38 16 12 Si 0.90 17.79 29.67 -169.99 -5.04 12.74 16 13 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 14 H -0.28 -5.54 7.11 56.52 0.40 -5.13 16 15 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 16 C 0.15 3.42 5.00 -5.19 -0.03 3.40 16 17 C -0.06 -1.22 5.31 -104.62 -0.56 -1.78 16 18 C -0.12 -2.51 9.18 -39.58 -0.36 -2.88 16 19 C -0.14 -2.65 10.05 -39.58 -0.40 -3.05 16 20 C -0.14 -2.41 10.05 -39.58 -0.40 -2.81 16 21 C -0.14 -2.63 10.05 -39.58 -0.40 -3.03 16 22 C -0.07 -1.35 8.53 -39.58 -0.34 -1.69 16 23 C 0.42 6.23 2.38 37.16 0.09 6.32 16 24 F -0.19 -2.69 16.48 2.25 0.04 -2.65 16 25 F -0.18 -2.72 16.11 2.25 0.04 -2.68 16 26 F -0.18 -2.70 16.86 2.25 0.04 -2.66 16 27 H 0.07 0.99 7.98 -51.93 -0.41 0.58 16 28 H 0.07 1.05 7.63 -51.93 -0.40 0.65 16 29 H 0.12 2.23 4.89 -51.93 -0.25 1.98 16 30 H 0.38 4.77 8.69 45.56 0.40 5.17 16 31 H 0.10 1.77 7.11 -51.93 -0.37 1.40 16 32 H 0.09 1.55 7.90 -51.93 -0.41 1.14 16 33 H 0.27 5.83 8.31 -40.82 -0.34 5.49 16 34 H 0.12 2.63 5.11 -51.93 -0.27 2.36 16 35 H 0.06 1.24 7.66 -51.93 -0.40 0.84 16 36 H 0.14 3.05 4.37 -52.49 -0.23 2.82 16 37 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 38 H 0.10 1.53 8.06 -52.49 -0.42 1.10 16 39 H 0.11 1.66 8.06 -52.49 -0.42 1.23 16 40 H 0.13 2.50 6.94 -52.49 -0.36 2.13 16 LS Contribution 333.52 15.07 5.03 5.03 Total: -1.00 -25.59 333.52 -6.45 -32.04 By element: Atomic # 1 Polarization: 18.28 SS G_CDS: -3.45 Total: 14.83 kcal Atomic # 6 Polarization: -3.75 SS G_CDS: -2.50 Total: -6.25 kcal Atomic # 7 Polarization: -28.42 SS G_CDS: 0.16 Total: -28.26 kcal Atomic # 8 Polarization: -21.38 SS G_CDS: -0.76 Total: -22.14 kcal Atomic # 9 Polarization: -8.10 SS G_CDS: 0.11 Total: -7.99 kcal Atomic # 14 Polarization: 17.79 SS G_CDS: -5.04 Total: 12.74 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -25.59 -6.45 -32.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179807458.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -160.764 kcal (2) G-P(sol) polarization free energy of solvation -25.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds