Wall clock time and date at job start Tue Mar 31 2020 16:49:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42904 * 109.46697 * 2 1 4 4 C 1.53000 * 109.47210 * 119.99357 * 2 1 3 5 5 C 1.50698 * 109.47326 * 303.31149 * 4 2 1 6 6 O 1.21284 * 120.00099 * 353.97905 * 5 4 2 7 7 N 1.34779 * 119.99824 * 173.97753 * 5 4 2 8 8 C 1.37099 * 120.00264 * 0.02562 * 7 5 4 9 9 H 1.08005 * 119.99496 * 356.75568 * 8 7 5 10 10 C 1.38943 * 120.00264 * 176.75684 * 8 7 5 11 11 N 1.31411 * 119.99928 * 36.28211 * 10 8 7 12 12 Si 1.86802 * 120.00095 * 216.27730 * 10 8 7 13 13 H 1.48492 * 109.47240 * 0.02562 * 12 10 8 14 14 H 1.48495 * 109.46839 * 120.00244 * 12 10 8 15 15 H 1.48503 * 109.46905 * 240.00132 * 12 10 8 16 16 C 1.46503 * 119.99879 * 179.97438 * 7 5 4 17 17 C 1.50706 * 109.46653 * 82.52821 * 16 7 5 18 18 C 1.38237 * 119.99899 * 305.08635 * 17 16 7 19 19 C 1.38236 * 119.99575 * 179.77305 * 18 17 16 20 20 C 1.38237 * 120.00250 * 0.50187 * 19 18 17 21 21 C 1.38237 * 119.99427 * 359.75168 * 20 19 18 22 22 C 1.38230 * 120.00773 * 359.97438 * 21 20 19 23 23 C 1.52999 * 109.47641 * 240.00266 * 2 1 3 24 24 F 1.39891 * 109.47301 * 179.97438 * 23 2 1 25 25 F 1.39901 * 109.46408 * 299.99788 * 23 2 1 26 26 F 1.39904 * 109.47280 * 59.99076 * 23 2 1 27 27 H 1.09002 * 109.47045 * 53.59690 * 1 2 3 28 28 H 1.08998 * 109.46451 * 173.59426 * 1 2 3 29 29 H 1.08997 * 109.46888 * 293.58712 * 1 2 3 30 30 H 0.96703 * 114.00264 * 179.97438 * 3 2 1 31 31 H 1.08999 * 109.46752 * 63.31264 * 4 2 1 32 32 H 1.09004 * 109.46920 * 183.30808 * 4 2 1 33 33 H 0.97000 * 120.00532 * 179.97438 * 11 10 8 34 34 H 1.08996 * 109.46651 * 202.52229 * 16 7 5 35 35 H 1.08995 * 109.47090 * 322.52636 * 16 7 5 36 36 H 1.07997 * 119.99957 * 359.97438 * 18 17 16 37 37 H 1.08001 * 119.99696 * 180.22565 * 19 18 17 38 38 H 1.07997 * 119.99988 * 179.72872 * 20 19 18 39 39 H 1.07998 * 119.99125 * 179.97438 * 21 20 19 40 40 H 1.07992 * 120.00445 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 2.0401 -0.7211 1.2493 5 6 1.4719 -0.0596 2.4784 6 8 0.8215 0.9587 2.3732 7 7 1.6865 -0.5995 3.6945 8 6 2.4222 -1.7503 3.8135 9 1 2.7853 -2.2529 2.9291 10 6 2.7005 -2.2700 5.0716 11 7 1.8039 -2.1891 6.0290 12 14 4.3490 -3.0840 5.4022 13 1 5.1756 -3.0466 4.1693 14 1 5.0507 -2.3567 6.4903 15 1 4.1313 -4.4951 5.8103 16 6 1.1346 0.0439 4.8893 17 6 -0.3049 -0.3675 5.0617 18 6 -1.2060 -0.1783 4.0306 19 6 -2.5254 -0.5599 4.1871 20 6 -2.9460 -1.1211 5.3784 21 6 -2.0460 -1.3054 6.4113 22 6 -0.7254 -0.9290 6.2529 23 6 2.0402 -0.7212 -1.2492 24 9 3.4391 -0.7206 -1.2494 25 9 1.5739 -2.0402 -1.2491 26 9 1.5737 -0.0618 -2.3916 27 1 -0.3633 0.6099 -0.8271 28 1 -0.3632 -1.0213 -0.1147 29 1 -0.3633 0.4112 0.9418 30 1 2.9703 1.4238 0.0004 31 1 1.7260 -1.7645 1.2202 32 1 3.1285 -0.6700 1.2794 33 1 1.9979 -2.5522 6.9072 34 1 1.7074 -0.2629 5.7645 35 1 1.1924 1.1266 4.7784 36 1 -0.8785 0.2646 3.1017 37 1 -3.2286 -0.4155 3.3802 38 1 -3.9778 -1.4152 5.5021 39 1 -2.3747 -1.7435 7.3421 40 1 -0.0224 -1.0726 7.0600 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001179807458.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:49:11 Heat of formation + Delta-G solvation = -205.106995 kcal Electronic energy + Delta-G solvation = -30204.485367 eV Core-core repulsion = 25569.610991 eV Total energy + Delta-G solvation = -4634.874375 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.118 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -51.20967 -48.71262 -48.66275 -41.10655 -39.64830 -38.40494 -36.64490 -33.63588 -33.54856 -32.41143 -31.47172 -29.30507 -27.57883 -27.20594 -25.99861 -23.16813 -22.66024 -21.88299 -20.90098 -19.98114 -19.49661 -19.34976 -18.62600 -17.72099 -17.49830 -16.78973 -16.40120 -16.06718 -16.00121 -15.89885 -15.57698 -15.50739 -15.34304 -15.11314 -15.05486 -14.84840 -14.81031 -14.61358 -14.18027 -14.03154 -13.73883 -13.52462 -13.44434 -13.29944 -13.08037 -12.91216 -12.56888 -12.41793 -12.39744 -12.11171 -12.04939 -11.85428 -11.56868 -11.32331 -10.67000 -10.16270 -9.76468 -9.53658 -9.31999 -8.35948 -5.69415 0.71594 0.79588 1.38705 1.53096 1.55294 1.62058 2.04065 2.29785 2.54400 2.66482 2.88625 3.02433 3.07024 3.33914 3.38626 3.62516 3.84035 4.20173 4.28976 4.35326 4.44413 4.53679 4.60161 4.64073 4.73510 4.75643 4.87203 4.93459 5.04446 5.15078 5.33848 5.40401 5.49976 5.56451 5.81815 5.83357 5.84852 6.16255 6.41412 6.48109 6.49717 7.16975 7.65337 8.07896 8.63756 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.011167 B = 0.005280 C = 0.003988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2506.818077 B = 5302.040319 C = 7019.357254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.129 3.871 3 O -0.524 6.524 4 C -0.146 4.146 5 C 0.451 3.549 6 O -0.601 6.601 7 N -0.437 5.437 8 C -0.377 4.377 9 H 0.109 0.891 10 C 0.020 3.980 11 N -0.842 5.842 12 Si 0.960 3.040 13 H -0.264 1.264 14 H -0.280 1.280 15 H -0.286 1.286 16 C 0.158 3.842 17 C -0.078 4.078 18 C -0.141 4.141 19 C -0.145 4.145 20 C -0.132 4.132 21 C -0.144 4.144 22 C -0.081 4.081 23 C 0.429 3.571 24 F -0.181 7.181 25 F -0.179 7.179 26 F -0.178 7.178 27 H 0.076 0.924 28 H 0.081 0.919 29 H 0.094 0.906 30 H 0.389 0.611 31 H 0.100 0.900 32 H 0.105 0.895 33 H 0.273 0.727 34 H 0.105 0.895 35 H 0.041 0.959 36 H 0.124 0.876 37 H 0.130 0.870 38 H 0.142 0.858 39 H 0.135 0.865 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.308 0.025 -5.550 5.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.085 3.915 3 O -0.331 6.331 4 C -0.186 4.186 5 C 0.240 3.760 6 O -0.489 6.489 7 N -0.154 5.154 8 C -0.503 4.503 9 H 0.126 0.874 10 C -0.187 4.187 11 N -0.477 5.477 12 Si 0.785 3.215 13 H -0.188 1.188 14 H -0.206 1.206 15 H -0.212 1.212 16 C 0.035 3.965 17 C -0.079 4.079 18 C -0.159 4.159 19 C -0.163 4.163 20 C -0.150 4.150 21 C -0.162 4.162 22 C -0.099 4.099 23 C 0.375 3.625 24 F -0.163 7.163 25 F -0.161 7.161 26 F -0.159 7.159 27 H 0.095 0.905 28 H 0.100 0.900 29 H 0.112 0.888 30 H 0.239 0.761 31 H 0.118 0.882 32 H 0.124 0.876 33 H 0.083 0.917 34 H 0.122 0.878 35 H 0.059 0.941 36 H 0.142 0.858 37 H 0.148 0.852 38 H 0.160 0.840 39 H 0.153 0.847 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -2.252 0.569 -5.398 5.877 hybrid contribution 1.652 -0.913 0.092 1.890 sum -0.599 -0.345 -5.307 5.351 Atomic orbital electron populations 1.22075 0.89473 1.03549 1.06132 1.21922 0.98214 0.83438 0.87914 1.86766 1.28042 1.22277 1.95991 1.22068 1.03110 1.01227 0.92197 1.19779 0.85019 0.86786 0.84367 1.90466 1.45239 1.27342 1.85879 1.43959 1.44704 1.22332 1.04383 1.19814 1.30917 1.04788 0.94807 0.87378 1.25739 0.99826 0.97581 0.95526 1.70371 1.31155 1.41278 1.04910 0.85423 0.80256 0.77275 0.78561 1.18765 1.20586 1.21225 1.20488 0.91561 0.93941 0.90515 1.20227 0.95140 0.98164 0.94339 1.21780 0.94124 1.00142 0.99866 1.21286 0.95611 1.00795 0.98587 1.21316 1.00270 1.00056 0.93314 1.21360 0.93374 1.01559 0.99933 1.21126 0.95430 0.95927 0.97445 1.21580 0.75653 0.78034 0.87270 1.93163 1.29942 1.96343 1.96842 1.93173 1.88425 1.37687 1.96781 1.93171 1.88395 1.80717 1.53644 0.90539 0.89984 0.88764 0.76101 0.88175 0.87637 0.91660 0.87761 0.94089 0.85820 0.85230 0.84018 0.84676 0.86214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.96 8.32 71.98 0.60 -4.36 16 2 C 0.13 4.03 0.48 -10.79 -0.01 4.02 16 3 O -0.52 -16.61 11.90 -132.00 -1.57 -18.18 16 4 C -0.15 -5.08 3.18 29.85 0.09 -4.99 16 5 C 0.45 19.32 6.26 87.66 0.55 19.87 16 6 O -0.60 -27.56 10.31 13.94 0.14 -27.42 16 7 N -0.44 -20.15 2.59 -639.60 -1.65 -21.80 16 8 C -0.38 -17.45 9.20 84.04 0.77 -16.67 16 9 H 0.11 4.75 6.47 -2.91 -0.02 4.73 16 10 C 0.02 0.90 4.81 84.92 0.41 1.31 16 11 N -0.84 -38.76 8.27 21.66 0.18 -38.58 16 12 Si 0.96 36.41 29.67 68.60 2.04 38.45 16 13 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 14 H -0.28 -10.65 7.11 99.48 0.71 -9.94 16 15 H -0.29 -10.94 7.11 99.48 0.71 -10.23 16 16 C 0.16 7.31 5.00 85.63 0.43 7.74 16 17 C -0.08 -3.43 5.31 -19.86 -0.11 -3.54 16 18 C -0.14 -6.01 9.18 22.27 0.20 -5.80 16 19 C -0.14 -5.20 10.05 22.27 0.22 -4.98 16 20 C -0.13 -4.26 10.05 22.27 0.22 -4.04 16 21 C -0.14 -4.97 10.05 22.27 0.22 -4.75 16 22 C -0.08 -3.26 8.53 22.27 0.19 -3.07 16 23 C 0.43 12.04 2.38 71.98 0.17 12.22 16 24 F -0.18 -4.85 16.48 44.97 0.74 -4.11 16 25 F -0.18 -5.10 16.11 44.97 0.72 -4.38 16 26 F -0.18 -4.99 16.86 44.97 0.76 -4.24 16 27 H 0.08 2.23 7.98 -2.39 -0.02 2.21 16 28 H 0.08 2.36 7.63 -2.39 -0.02 2.35 16 29 H 0.09 3.57 4.89 -2.39 -0.01 3.56 16 30 H 0.39 9.48 8.69 -74.06 -0.64 8.83 16 31 H 0.10 3.49 7.11 -2.39 -0.02 3.47 16 32 H 0.11 3.39 7.90 -2.38 -0.02 3.37 16 33 H 0.27 11.83 8.31 -92.71 -0.77 11.06 16 34 H 0.10 4.98 5.11 -2.39 -0.01 4.96 16 35 H 0.04 1.94 7.66 -2.39 -0.02 1.92 16 36 H 0.12 5.61 4.37 -2.91 -0.01 5.60 16 37 H 0.13 3.94 8.06 -2.91 -0.02 3.91 16 38 H 0.14 3.52 8.06 -2.91 -0.02 3.50 16 39 H 0.14 3.81 8.06 -2.91 -0.02 3.78 16 40 H 0.12 4.87 6.94 -2.91 -0.02 4.85 16 Total: -1.00 -54.25 333.52 5.80 -48.45 By element: Atomic # 1 Polarization: 38.38 SS G_CDS: 0.47 Total: 38.85 kcal Atomic # 6 Polarization: -11.02 SS G_CDS: 3.98 Total: -7.04 kcal Atomic # 7 Polarization: -58.91 SS G_CDS: -1.48 Total: -60.38 kcal Atomic # 8 Polarization: -44.17 SS G_CDS: -1.43 Total: -45.60 kcal Atomic # 9 Polarization: -14.95 SS G_CDS: 2.22 Total: -12.73 kcal Atomic # 14 Polarization: 36.41 SS G_CDS: 2.04 Total: 38.45 kcal Total: -54.25 5.80 -48.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179807458.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -156.661 kcal (2) G-P(sol) polarization free energy of solvation -54.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -210.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -205.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds