Wall clock time and date at job start Tue Mar 31 2020 16:49:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42902 * 109.46882 * 2 1 4 4 C 1.53000 * 109.47260 * 240.00176 * 2 1 3 5 5 C 1.50690 * 109.47168 * 62.18879 * 4 2 1 6 6 O 1.21287 * 120.00532 * 6.23071 * 5 4 2 7 7 N 1.34784 * 119.99773 * 186.51061 * 5 4 2 8 8 C 1.37092 * 120.00151 * 4.36597 * 7 5 4 9 9 H 1.08005 * 120.00345 * 323.84776 * 8 7 5 10 10 C 1.38945 * 119.99909 * 143.84101 * 8 7 5 11 11 N 1.31412 * 120.00030 * 158.22567 * 10 8 7 12 12 Si 1.86799 * 120.00211 * 338.22676 * 10 8 7 13 13 H 1.48498 * 109.46890 * 95.34800 * 12 10 8 14 14 H 1.48503 * 109.47199 * 215.34689 * 12 10 8 15 15 H 1.48494 * 109.47187 * 335.34595 * 12 10 8 16 16 C 1.46502 * 119.99512 * 184.37006 * 7 5 4 17 17 C 1.50695 * 109.47110 * 90.00148 * 16 7 5 18 18 C 1.38236 * 119.99992 * 269.72065 * 17 16 7 19 19 C 1.38237 * 120.00252 * 179.76597 * 18 17 16 20 20 C 1.38237 * 119.99574 * 0.50902 * 19 18 17 21 21 C 1.38242 * 120.00320 * 359.74591 * 20 19 18 22 22 C 1.38231 * 119.99469 * 359.97438 * 21 20 19 23 23 C 1.52997 * 109.47179 * 119.99707 * 2 1 3 24 24 F 1.39899 * 109.47502 * 177.66350 * 23 2 1 25 25 F 1.39902 * 109.47180 * 297.66636 * 23 2 1 26 26 F 1.39907 * 109.47029 * 57.66536 * 23 2 1 27 27 H 1.09001 * 109.46507 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47489 * 299.99818 * 1 2 3 29 29 H 1.08998 * 109.47071 * 60.00124 * 1 2 3 30 30 H 0.96698 * 113.99868 * 179.97438 * 3 2 1 31 31 H 1.08997 * 109.46972 * 302.18582 * 4 2 1 32 32 H 1.09001 * 109.46576 * 182.19207 * 4 2 1 33 33 H 0.97003 * 120.00457 * 179.97438 * 11 10 8 34 34 H 1.09006 * 109.46849 * 209.99503 * 16 7 5 35 35 H 1.08997 * 109.47498 * 329.99319 * 16 7 5 36 36 H 1.08000 * 119.99866 * 359.97438 * 18 17 16 37 37 H 1.07995 * 120.00319 * 180.22865 * 19 18 17 38 38 H 1.07997 * 119.99737 * 179.72138 * 20 19 18 39 39 H 1.07995 * 119.99596 * 179.97438 * 21 20 19 40 40 H 1.08003 * 119.99563 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 1.5826 0.0198 -2.4790 6 8 1.0122 1.0845 -2.3685 7 7 1.8022 -0.5033 -3.7017 8 6 2.3606 -1.7493 -3.8239 9 1 3.1194 -2.0720 -3.1263 10 6 1.9503 -2.5973 -4.8453 11 7 2.7327 -3.5763 -5.2406 12 14 0.2866 -2.3457 -5.6565 13 1 0.4544 -1.5337 -6.8885 14 1 -0.2970 -3.6650 -6.0089 15 1 -0.6203 -1.6384 -4.7171 16 6 1.4442 0.2599 -4.8999 17 6 2.6173 1.1037 -5.3271 18 6 2.7582 2.3893 -4.8388 19 6 3.8370 3.1617 -5.2269 20 6 4.7691 2.6523 -6.1115 21 6 4.6255 1.3685 -6.6039 22 6 3.5498 0.5942 -6.2113 23 6 2.0400 -0.7212 1.2492 24 9 3.4380 -0.7680 1.2227 25 9 1.6181 -0.0313 2.3909 26 9 1.5303 -2.0238 1.2765 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 2.9703 1.4237 0.0004 31 1 1.6451 -1.7369 -1.2691 32 1 3.1294 -0.7553 -1.2297 33 1 2.4461 -4.1686 -5.9534 34 1 1.1798 -0.4280 -5.7031 35 1 0.5937 0.9049 -4.6793 36 1 2.0273 2.7890 -4.1515 37 1 3.9490 4.1647 -4.8426 38 1 5.6095 3.2573 -6.4182 39 1 5.3535 0.9708 -7.2953 40 1 3.4373 -0.4086 -6.5963 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001179807459.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:49:14 Heat of formation + Delta-G solvation = -214.261788 kcal Electronic energy + Delta-G solvation = -30009.606576 eV Core-core repulsion = 25374.335219 eV Total energy + Delta-G solvation = -4635.271357 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.118 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -51.20991 -48.71596 -48.66111 -41.21246 -39.91272 -38.53488 -36.68590 -34.12037 -33.64505 -32.51911 -31.71560 -29.51233 -27.59365 -27.24147 -26.34639 -23.36710 -22.75650 -22.13515 -20.92470 -19.97968 -19.51009 -19.35741 -18.77030 -17.88327 -17.48269 -17.36795 -16.77835 -16.25449 -16.10075 -15.82031 -15.62399 -15.52029 -15.45136 -15.11207 -15.06619 -14.85661 -14.80586 -14.67225 -14.44220 -14.23258 -14.19136 -13.95997 -13.56458 -13.36776 -13.25254 -13.05496 -12.88436 -12.59545 -12.39399 -12.21774 -12.01448 -11.94226 -11.66060 -11.38349 -11.09675 -10.44492 -9.76449 -9.72996 -9.61220 -8.51601 -6.09939 0.44918 0.56317 1.16905 1.31287 1.39796 1.53016 1.89097 2.15797 2.39336 2.62849 2.74631 2.88639 3.01373 3.15631 3.31382 3.58317 3.78486 3.88723 3.98960 4.18664 4.23524 4.33127 4.35264 4.51985 4.54518 4.63766 4.73530 4.74149 4.76341 4.82190 5.14355 5.21322 5.22212 5.40180 5.62797 5.64674 5.81746 6.05132 6.17995 6.24844 6.44623 6.95570 7.41525 7.78299 8.62071 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.011657 B = 0.005095 C = 0.004124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2401.386721 B = 5494.613390 C = 6788.389532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.126 3.874 3 O -0.520 6.520 4 C -0.150 4.150 5 C 0.491 3.509 6 O -0.579 6.579 7 N -0.468 5.468 8 C -0.338 4.338 9 H 0.086 0.914 10 C 0.039 3.961 11 N -0.889 5.889 12 Si 0.913 3.087 13 H -0.264 1.264 14 H -0.286 1.286 15 H -0.264 1.264 16 C 0.136 3.864 17 C -0.106 4.106 18 C -0.112 4.112 19 C -0.126 4.126 20 C -0.118 4.118 21 C -0.129 4.129 22 C -0.113 4.113 23 C 0.430 3.570 24 F -0.183 7.183 25 F -0.176 7.176 26 F -0.178 7.178 27 H 0.088 0.912 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.388 0.612 31 H 0.110 0.890 32 H 0.101 0.899 33 H 0.279 0.721 34 H 0.062 0.938 35 H 0.078 0.922 36 H 0.117 0.883 37 H 0.146 0.854 38 H 0.153 0.847 39 H 0.139 0.861 40 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.929 7.810 4.741 9.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.082 3.918 3 O -0.326 6.326 4 C -0.190 4.190 5 C 0.281 3.719 6 O -0.462 6.462 7 N -0.189 5.189 8 C -0.466 4.466 9 H 0.103 0.897 10 C -0.166 4.166 11 N -0.525 5.525 12 Si 0.739 3.261 13 H -0.191 1.191 14 H -0.213 1.213 15 H -0.188 1.188 16 C 0.014 3.986 17 C -0.107 4.107 18 C -0.131 4.131 19 C -0.144 4.144 20 C -0.136 4.136 21 C -0.147 4.147 22 C -0.131 4.131 23 C 0.375 3.625 24 F -0.165 7.165 25 F -0.158 7.158 26 F -0.160 7.160 27 H 0.106 0.894 28 H 0.100 0.900 29 H 0.104 0.896 30 H 0.237 0.763 31 H 0.128 0.872 32 H 0.119 0.881 33 H 0.089 0.911 34 H 0.080 0.920 35 H 0.097 0.903 36 H 0.135 0.865 37 H 0.164 0.836 38 H 0.171 0.829 39 H 0.157 0.843 40 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 0.047 8.271 4.700 9.513 hybrid contribution 0.130 -1.026 -0.338 1.089 sum 0.177 7.244 4.362 8.458 Atomic orbital electron populations 1.21952 0.89008 1.04227 1.05426 1.21971 0.98438 0.83529 0.87835 1.86767 1.27917 1.21974 1.95960 1.22115 1.03468 1.01568 0.91870 1.20132 0.80928 0.86359 0.84521 1.90567 1.44938 1.24196 1.86532 1.43767 1.56555 1.15215 1.03391 1.18898 1.20635 0.89819 1.17203 0.89679 1.25672 0.98990 0.95119 0.96814 1.69822 1.35987 1.19033 1.27694 0.86371 0.82634 0.77378 0.79679 1.19097 1.21261 1.18783 1.20576 0.95595 0.93952 0.88498 1.20181 0.97725 0.94983 0.97832 1.21197 0.99093 0.93560 0.99233 1.21409 0.94132 1.00633 0.98211 1.21467 0.99632 0.95462 0.97053 1.21374 0.97493 0.94986 1.00806 1.21117 0.95195 0.99123 0.97712 1.21552 0.75617 0.78086 0.87256 1.93169 1.30222 1.96333 1.96753 1.93174 1.89752 1.79236 1.53612 1.93183 1.86897 1.39093 1.96807 0.89372 0.90035 0.89601 0.76263 0.87202 0.88058 0.91117 0.92012 0.90340 0.86471 0.83644 0.82935 0.84290 0.87996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.42 8.31 71.98 0.60 -3.82 16 2 C 0.13 3.83 0.48 -10.79 -0.01 3.82 16 3 O -0.52 -15.93 11.49 -129.41 -1.49 -17.41 16 4 C -0.15 -5.23 3.32 29.84 0.10 -5.13 16 5 C 0.49 20.35 7.11 87.65 0.62 20.97 16 6 O -0.58 -24.93 12.51 16.52 0.21 -24.72 16 7 N -0.47 -20.94 2.19 -639.61 -1.40 -22.34 16 8 C -0.34 -16.54 8.99 84.04 0.76 -15.79 16 9 H 0.09 4.42 7.36 -2.91 -0.02 4.39 16 10 C 0.04 1.96 5.32 84.92 0.45 2.41 16 11 N -0.89 -46.95 13.96 21.66 0.30 -46.64 16 12 Si 0.91 40.10 24.94 68.60 1.71 41.81 16 13 H -0.26 -11.16 6.68 99.48 0.66 -10.49 16 14 H -0.29 -12.41 7.11 99.48 0.71 -11.71 16 15 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 16 C 0.14 5.81 4.38 85.63 0.37 6.19 16 17 C -0.11 -4.16 5.46 -19.87 -0.11 -4.27 16 18 C -0.11 -3.92 9.70 22.27 0.22 -3.70 16 19 C -0.13 -3.55 10.05 22.27 0.22 -3.32 16 20 C -0.12 -3.09 10.05 22.27 0.22 -2.87 16 21 C -0.13 -3.91 10.05 22.27 0.22 -3.69 16 22 C -0.11 -4.27 9.70 22.27 0.22 -4.05 16 23 C 0.43 11.96 2.38 71.98 0.17 12.13 16 24 F -0.18 -5.04 16.36 44.97 0.74 -4.31 16 25 F -0.18 -4.83 16.80 44.97 0.76 -4.08 16 26 F -0.18 -5.07 16.32 44.97 0.73 -4.34 16 27 H 0.09 2.35 7.75 -2.39 -0.02 2.33 16 28 H 0.08 2.15 7.86 -2.39 -0.02 2.13 16 29 H 0.09 2.97 5.93 -2.39 -0.01 2.96 16 30 H 0.39 9.44 8.76 -74.06 -0.65 8.79 16 31 H 0.11 3.89 7.61 -2.39 -0.02 3.87 16 32 H 0.10 3.41 7.59 -2.39 -0.02 3.39 16 33 H 0.28 13.84 8.31 -92.71 -0.77 13.07 16 34 H 0.06 2.72 2.98 -2.38 -0.01 2.71 16 35 H 0.08 3.30 7.30 -2.39 -0.02 3.28 16 36 H 0.12 4.22 7.84 -2.91 -0.02 4.20 16 37 H 0.15 3.17 8.06 -2.91 -0.02 3.14 16 38 H 0.15 2.82 8.06 -2.91 -0.02 2.80 16 39 H 0.14 3.49 8.06 -2.91 -0.02 3.47 16 40 H 0.10 4.22 8.06 -2.91 -0.02 4.20 16 Total: -1.00 -57.57 342.27 6.03 -51.53 By element: Atomic # 1 Polarization: 31.21 SS G_CDS: 0.41 Total: 31.62 kcal Atomic # 6 Polarization: -5.19 SS G_CDS: 4.06 Total: -1.13 kcal Atomic # 7 Polarization: -67.88 SS G_CDS: -1.10 Total: -68.98 kcal Atomic # 8 Polarization: -40.85 SS G_CDS: -1.28 Total: -42.13 kcal Atomic # 9 Polarization: -14.95 SS G_CDS: 2.23 Total: -12.73 kcal Atomic # 14 Polarization: 40.10 SS G_CDS: 1.71 Total: 41.81 kcal Total: -57.57 6.03 -51.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179807459.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -162.728 kcal (2) G-P(sol) polarization free energy of solvation -57.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -220.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -214.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds