Wall clock time and date at job start Tue Mar 31 2020 17:37:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50698 * 120.00377 * 2 1 4 4 O 1.42901 * 109.47023 * 134.99841 * 3 2 1 5 5 C 1.42903 * 113.99888 * 179.97438 * 4 3 2 6 6 H 1.09006 * 110.79956 * 327.83255 * 5 4 3 7 7 C 1.55021 * 110.90236 * 91.45074 * 5 4 3 8 8 O 1.44445 * 103.52880 * 155.11428 * 7 5 4 9 9 C 1.43489 * 106.91404 * 320.20176 * 8 7 5 10 10 C 1.53858 * 107.57477 * 26.30454 * 9 8 7 11 11 C 1.52817 * 109.80171 * 266.75770 * 9 8 7 12 12 C 1.53086 * 109.67180 * 299.39517 * 11 9 8 13 13 C 1.53186 * 109.30424 * 299.19080 * 12 11 9 14 14 N 1.46930 * 108.85427 * 54.90322 * 13 12 11 15 15 S 1.65599 * 120.65601 * 126.11498 * 14 13 12 16 16 O 1.42106 * 106.40351 * 23.56296 * 15 14 13 17 17 O 1.42102 * 106.40360 * 156.48050 * 15 14 13 18 18 C 1.76193 * 107.21906 * 270.02098 * 15 14 13 19 19 H 1.08001 * 120.00189 * 0.02562 * 18 15 14 20 20 C 1.37879 * 120.00014 * 180.02562 * 18 15 14 21 21 N 1.31509 * 120.00222 * 359.97438 * 20 18 15 22 22 Si 1.86799 * 120.00084 * 179.97438 * 20 18 15 23 23 H 1.48502 * 109.47136 * 59.99510 * 22 20 18 24 24 H 1.48500 * 109.47434 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47224 * 299.99766 * 22 20 18 26 26 C 1.46986 * 118.68777 * 306.13424 * 14 13 12 27 27 H 1.08001 * 120.00080 * 0.02562 * 1 2 3 28 28 H 1.08000 * 120.00399 * 179.97438 * 1 2 3 29 29 H 1.08004 * 119.99589 * 179.97438 * 2 1 3 30 30 H 1.08991 * 109.46956 * 14.99475 * 3 2 1 31 31 H 1.08998 * 109.46933 * 254.99589 * 3 2 1 32 32 H 1.08996 * 110.60801 * 36.60702 * 7 5 4 33 33 H 1.08995 * 110.61180 * 273.62387 * 7 5 4 34 34 H 1.09000 * 110.50661 * 116.72070 * 10 9 8 35 35 H 1.08997 * 110.51086 * 239.42089 * 10 9 8 36 36 H 1.09000 * 109.34442 * 179.36229 * 11 9 8 37 37 H 1.09004 * 109.44928 * 59.48819 * 11 9 8 38 38 H 1.09005 * 109.49998 * 179.24973 * 12 11 9 39 39 H 1.08994 * 109.50054 * 59.14060 * 12 11 9 40 40 H 1.08998 * 109.57505 * 295.08903 * 13 12 11 41 41 H 1.08998 * 109.67254 * 174.77431 * 13 12 11 42 42 H 0.97003 * 120.00439 * 180.02562 * 21 20 18 43 43 H 1.09002 * 109.59087 * 172.92666 * 26 14 13 44 44 H 1.08999 * 109.59071 * 293.21863 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 8 3.1267 1.2411 0.9527 5 6 3.9085 2.4347 1.0321 6 1 3.9601 2.9289 0.0619 7 6 3.3457 3.3938 2.1122 8 8 4.4921 4.1869 2.4903 9 6 5.6182 3.2987 2.5342 10 6 5.3273 2.1320 1.5742 11 6 5.8042 2.7683 3.9552 12 6 6.0620 3.9357 4.9113 13 6 7.3397 4.6660 4.4860 14 7 7.2124 5.0642 3.0774 15 16 7.4399 6.6398 2.6215 16 8 8.2532 7.2342 3.6238 17 8 7.7971 6.6121 1.2463 18 6 5.8731 7.4405 2.7125 19 1 5.0006 6.8861 3.0253 20 6 5.7607 8.7750 2.3843 21 7 6.8231 9.4503 2.0038 22 14 4.0995 9.6237 2.4801 23 1 3.5865 9.5521 3.8719 24 1 4.2464 11.0462 2.0798 25 1 3.1447 8.9478 1.5653 26 6 6.8788 4.0363 2.0810 27 1 -0.5400 0.9353 -0.0004 28 1 -0.5401 -0.9353 -0.0004 29 1 1.8499 -0.9354 0.0004 30 1 1.3856 2.1160 0.2659 31 1 2.4756 1.4866 -0.9926 32 1 2.9698 2.8310 2.9666 33 1 2.5629 4.0261 1.6934 34 1 6.0520 2.1174 0.7602 35 1 5.3362 1.1838 2.1118 36 1 6.6539 2.0861 3.9777 37 1 4.9042 2.2372 4.2651 38 1 6.1810 3.5556 5.9260 39 1 5.2197 4.6266 4.8775 40 1 8.1959 4.0015 4.6017 41 1 7.4790 5.5523 5.1048 42 1 6.7442 10.3892 1.7733 43 1 6.6987 4.5084 1.1152 44 1 7.7043 3.3299 1.9942 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192959629.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:37:54 Heat of formation + Delta-G solvation = -157.004464 kcal Electronic energy + Delta-G solvation = -28093.064080 eV Core-core repulsion = 24137.576278 eV Total energy + Delta-G solvation = -3955.487801 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.133 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.31698 -38.06158 -36.17496 -35.19791 -34.12060 -33.87399 -32.97576 -31.82429 -31.39728 -29.77030 -26.19005 -25.97569 -25.71201 -24.06638 -22.24622 -21.19263 -20.20385 -19.69371 -18.43105 -17.47647 -17.19077 -16.32485 -16.18129 -15.77026 -15.30280 -14.96289 -14.91083 -14.70161 -14.46277 -14.03730 -13.78052 -13.51675 -13.35347 -13.10108 -12.86174 -12.70386 -12.44004 -11.94152 -11.92290 -11.78189 -11.43971 -11.43416 -11.21842 -11.12712 -11.11062 -10.82321 -10.66540 -10.53937 -10.35502 -10.21573 -10.18237 -9.97547 -9.83970 -9.58620 -9.35069 -9.12917 -8.77269 -8.07651 -6.57880 -5.16086 1.82333 2.36243 3.15581 3.18824 3.25716 3.39761 4.07619 4.15998 4.43695 4.62643 4.67984 4.72591 4.75788 4.81910 4.84952 5.01015 5.10410 5.16789 5.20610 5.23630 5.40006 5.50693 5.56010 5.65274 5.71137 5.77676 5.80829 5.84190 5.91658 5.97203 6.02742 6.10245 6.17431 6.22127 6.25161 6.31760 6.37103 6.50327 6.70125 6.90289 6.95205 7.21178 7.46809 7.66929 8.20343 9.03255 10.35751 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.013618 B = 0.004126 C = 0.003521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2055.644135 B = 6785.338318 C = 7950.311250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.150 4.150 3 C 0.085 3.915 4 O -0.371 6.371 5 C 0.055 3.945 6 H 0.082 0.918 7 C 0.023 3.977 8 O -0.334 6.334 9 C 0.092 3.908 10 C -0.141 4.141 11 C -0.122 4.122 12 C -0.131 4.131 13 C 0.126 3.874 14 N -1.005 6.005 15 S 2.716 3.284 16 O -1.006 7.006 17 O -1.007 7.007 18 C -1.008 5.008 19 H 0.109 0.891 20 C 0.133 3.867 21 N -0.852 5.852 22 Si 0.919 3.081 23 H -0.265 1.265 24 H -0.279 1.279 25 H -0.265 1.265 26 C 0.137 3.863 27 H 0.098 0.902 28 H 0.103 0.897 29 H 0.116 0.884 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.091 0.909 34 H 0.087 0.913 35 H 0.090 0.910 36 H 0.069 0.931 37 H 0.062 0.938 38 H 0.065 0.935 39 H 0.077 0.923 40 H 0.055 0.945 41 H 0.091 0.909 42 H 0.289 0.711 43 H 0.097 0.903 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.135 -17.774 -0.849 20.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.168 4.168 3 C 0.009 3.991 4 O -0.290 6.290 5 C -0.004 4.004 6 H 0.100 0.900 7 C -0.055 4.055 8 O -0.252 6.252 9 C 0.050 3.950 10 C -0.179 4.179 11 C -0.160 4.160 12 C -0.170 4.170 13 C 0.000 4.000 14 N -0.839 5.839 15 S 2.817 3.183 16 O -0.997 6.997 17 O -0.997 6.997 18 C -1.142 5.142 19 H 0.127 0.873 20 C -0.084 4.084 21 N -0.483 5.483 22 Si 0.743 3.257 23 H -0.190 1.190 24 H -0.204 1.204 25 H -0.190 1.190 26 C 0.010 3.990 27 H 0.116 0.884 28 H 0.122 0.878 29 H 0.134 0.866 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.109 0.891 34 H 0.106 0.894 35 H 0.108 0.892 36 H 0.088 0.912 37 H 0.081 0.919 38 H 0.084 0.916 39 H 0.096 0.904 40 H 0.073 0.927 41 H 0.109 0.891 42 H 0.099 0.901 43 H 0.115 0.885 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.108 -17.174 -0.999 19.018 hybrid contribution -1.728 0.401 -0.072 1.776 sum -9.837 -16.773 -1.072 19.474 Atomic orbital electron populations 1.23854 0.95601 1.02307 1.00106 1.22750 0.95630 0.98187 1.00234 1.21618 0.89127 0.95849 0.92553 1.87918 1.44328 1.36347 1.60397 1.23782 0.91176 0.85888 0.99509 0.90012 1.23998 0.90784 0.93834 0.96844 1.89156 1.15767 1.30533 1.89740 1.22310 0.88940 0.89018 0.94693 1.22974 0.95262 0.99657 1.00019 1.21863 1.01583 0.97925 0.94589 1.21846 0.99717 0.97721 0.97742 1.21195 0.96223 1.00215 0.82335 1.58123 1.86974 1.26367 1.12430 1.00455 0.76108 0.69319 0.72378 1.93347 1.70519 1.74398 1.61426 1.93339 1.85457 1.85426 1.35524 1.30603 1.18311 1.05697 1.59604 0.87322 1.24737 0.98552 0.96005 0.89088 1.69900 1.29938 1.11375 1.37070 0.86238 0.82104 0.77769 0.79573 1.18975 1.20386 1.19006 1.21318 0.93371 0.91425 0.92866 0.88352 0.87833 0.86609 0.92578 0.92070 0.91633 0.89119 0.89393 0.89193 0.91237 0.91919 0.91619 0.90399 0.92686 0.89114 0.90080 0.88513 0.91174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.28 14.31 29.02 0.42 -0.87 16 2 C -0.15 -1.25 9.89 -36.03 -0.36 -1.60 16 3 C 0.08 0.79 6.23 36.00 0.22 1.01 16 4 O -0.37 -4.26 10.09 -35.23 -0.36 -4.61 16 5 C 0.05 0.65 3.58 -24.68 -0.09 0.57 16 6 H 0.08 0.94 7.89 -51.93 -0.41 0.53 16 7 C 0.02 0.31 7.40 38.23 0.28 0.59 16 8 O -0.33 -5.75 10.19 -35.23 -0.36 -6.10 16 9 C 0.09 1.36 0.75 -90.30 -0.07 1.29 16 10 C -0.14 -1.67 6.04 -25.30 -0.15 -1.83 16 11 C -0.12 -1.59 4.64 -26.78 -0.12 -1.72 16 12 C -0.13 -1.94 5.96 -26.59 -0.16 -2.09 16 13 C 0.13 2.21 6.37 -3.71 -0.02 2.19 16 14 N -1.01 -20.84 3.27 -113.63 -0.37 -21.21 16 15 S 2.72 73.92 4.97 -107.50 -0.53 73.39 16 16 O -1.01 -29.90 16.73 -57.17 -0.96 -30.85 16 17 O -1.01 -29.80 16.74 -57.17 -0.96 -30.75 16 18 C -1.01 -28.50 9.75 30.60 0.30 -28.20 16 19 H 0.11 2.91 7.81 -52.49 -0.41 2.50 16 20 C 0.13 3.80 5.46 -17.82 -0.10 3.71 16 21 N -0.85 -25.64 13.19 55.43 0.73 -24.91 16 22 Si 0.92 21.27 29.54 -169.99 -5.02 16.25 16 23 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 24 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 25 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 26 C 0.14 2.39 5.10 -3.81 -0.02 2.37 16 27 H 0.10 0.64 7.90 -52.49 -0.41 0.22 16 28 H 0.10 0.59 8.06 -52.49 -0.42 0.16 16 29 H 0.12 0.91 8.06 -52.48 -0.42 0.49 16 30 H 0.06 0.49 7.86 -51.93 -0.41 0.08 16 31 H 0.06 0.52 8.11 -51.93 -0.42 0.10 16 32 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.09 0.94 7.68 -51.93 -0.40 0.55 16 35 H 0.09 0.97 7.63 -51.93 -0.40 0.57 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.08 1.30 7.70 -51.93 -0.40 0.90 16 40 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.09 1.72 7.12 -51.93 -0.37 1.35 16 42 H 0.29 7.85 8.31 -40.82 -0.34 7.51 16 43 H 0.10 1.85 7.14 -51.93 -0.37 1.48 16 44 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 369.78 15.07 5.57 5.57 Total: -1.00 -35.98 369.78 -9.06 -45.04 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -6.94 Total: 2.78 kcal Atomic # 6 Polarization: -24.72 SS G_CDS: 0.13 Total: -24.58 kcal Atomic # 7 Polarization: -46.48 SS G_CDS: 0.36 Total: -46.13 kcal Atomic # 8 Polarization: -69.69 SS G_CDS: -2.63 Total: -72.32 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: 73.92 SS G_CDS: -0.53 Total: 73.39 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -35.98 -9.06 -45.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192959629.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.968 kcal (2) G-P(sol) polarization free energy of solvation -35.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds