Wall clock time and date at job start Tue Mar 31 2020 17:38:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50700 * 119.99730 * 2 1 4 4 O 1.42898 * 109.47139 * 135.00098 * 3 2 1 5 5 C 1.42900 * 114.00059 * 179.97438 * 4 3 2 6 6 H 1.09006 * 110.82659 * 32.18836 * 5 4 3 7 7 C 1.55018 * 110.90639 * 268.54658 * 5 4 3 8 8 O 1.44439 * 103.66960 * 204.99963 * 7 5 4 9 9 C 1.43491 * 106.91635 * 39.72108 * 8 7 5 10 10 C 1.53858 * 107.57294 * 333.69595 * 9 8 7 11 11 C 1.52771 * 109.90951 * 214.22530 * 9 8 7 12 12 C 1.53093 * 109.55132 * 299.52807 * 11 9 8 13 13 C 1.53186 * 109.30312 * 299.12854 * 12 11 9 14 14 N 1.46920 * 108.85845 * 54.90109 * 13 12 11 15 15 S 1.65595 * 120.65563 * 126.16356 * 14 13 12 16 16 O 1.42100 * 106.40293 * 203.53979 * 15 14 13 17 17 O 1.42105 * 106.40041 * 336.46018 * 15 14 13 18 18 C 1.76201 * 107.21886 * 89.99560 * 15 14 13 19 19 H 1.08002 * 120.00001 * 0.02562 * 18 15 14 20 20 C 1.37881 * 120.00217 * 179.97438 * 18 15 14 21 21 N 1.31512 * 119.99585 * 0.02562 * 20 18 15 22 22 Si 1.86790 * 120.00132 * 180.02562 * 20 18 15 23 23 H 1.48498 * 109.47269 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.47054 * 120.00426 * 22 20 18 25 25 H 1.48507 * 109.47371 * 240.00294 * 22 20 18 26 26 C 1.46986 * 118.68966 * 306.13868 * 14 13 12 27 27 H 1.08005 * 120.00170 * 180.02562 * 1 2 3 28 28 H 1.08003 * 119.99843 * 0.02562 * 1 2 3 29 29 H 1.07994 * 119.99945 * 179.97438 * 2 1 3 30 30 H 1.08993 * 109.47520 * 14.99470 * 3 2 1 31 31 H 1.09004 * 109.46907 * 254.99812 * 3 2 1 32 32 H 1.09002 * 110.61264 * 86.40979 * 7 5 4 33 33 H 1.08997 * 110.60993 * 323.58645 * 7 5 4 34 34 H 1.09001 * 110.50694 * 120.58051 * 10 9 8 35 35 H 1.08999 * 110.50309 * 243.14176 * 10 9 8 36 36 H 1.08999 * 109.46058 * 59.55677 * 11 9 8 37 37 H 1.09003 * 109.45659 * 179.50663 * 11 9 8 38 38 H 1.09003 * 109.49340 * 59.07788 * 12 11 9 39 39 H 1.09004 * 109.49820 * 179.14365 * 12 11 9 40 40 H 1.08995 * 109.57098 * 174.71652 * 13 12 11 41 41 H 1.09002 * 109.57208 * 295.08441 * 13 12 11 42 42 H 0.97009 * 119.99863 * 179.97438 * 21 20 18 43 43 H 1.08999 * 109.58879 * 293.34927 * 26 14 13 44 44 H 1.09005 * 109.58921 * 172.91563 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1267 1.2414 0.9526 5 6 3.9084 2.4350 1.0320 6 1 3.2958 3.3136 0.8294 7 6 5.1183 2.3692 0.0651 8 8 6.0796 3.2685 0.6596 9 6 6.0151 3.0697 2.0792 10 6 4.6043 2.5541 2.4124 11 6 6.2658 4.3922 2.8017 12 6 7.6570 4.9183 2.4392 13 6 8.7143 3.9037 2.8857 14 7 8.3972 2.5964 2.2949 15 16 9.5289 1.7730 1.4097 16 8 8.8089 0.8960 0.5543 17 8 10.4483 2.7449 0.9307 18 6 10.4249 0.7504 2.5305 19 1 10.1774 0.7554 3.5818 20 6 11.4412 -0.0569 2.0654 21 7 11.7422 -0.0632 0.7852 22 14 12.3906 -1.1414 3.2535 23 1 11.8609 -0.9521 4.6278 24 1 12.2370 -2.5639 2.8559 25 1 13.8283 -0.7709 3.2213 26 6 7.0558 2.0335 2.5056 27 1 -0.5401 -0.9353 0.0004 28 1 -0.5400 0.9353 -0.0004 29 1 1.8500 -0.9353 0.0004 30 1 1.3855 2.1161 0.2659 31 1 2.4755 1.4868 -0.9927 32 1 4.8341 2.7139 -0.9291 33 1 5.5180 1.3562 0.0191 34 1 4.6585 1.5783 2.8952 35 1 4.0783 3.2654 3.0491 36 1 5.5124 5.1196 2.4994 37 1 6.2065 4.2345 3.8786 38 1 7.7223 5.0610 1.3605 39 1 7.8290 5.8694 2.9431 40 1 9.6980 4.2285 2.5471 41 1 8.7081 3.8244 3.9728 42 1 12.4575 -0.6309 0.4580 43 1 6.9218 1.7934 3.5603 44 1 6.9399 1.1308 1.9056 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192959631.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:38:06 Heat of formation + Delta-G solvation = -157.652741 kcal Electronic energy + Delta-G solvation = -27916.278427 eV Core-core repulsion = 23960.762515 eV Total energy + Delta-G solvation = -3955.515913 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.133 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.30367 -38.04343 -36.17087 -35.16745 -34.08150 -33.84574 -33.03742 -31.97690 -31.34061 -29.67443 -26.17355 -26.07003 -25.68007 -24.15995 -22.06075 -21.28752 -20.17843 -19.68006 -18.64321 -17.32077 -17.09501 -16.39691 -16.10317 -15.87848 -15.23191 -15.11431 -15.01560 -14.64989 -14.31179 -13.98219 -13.77049 -13.49466 -13.34795 -13.04935 -12.81912 -12.75670 -12.45765 -12.27695 -11.95108 -11.66263 -11.53678 -11.25177 -11.24120 -11.20484 -10.97972 -10.81520 -10.65884 -10.55096 -10.44360 -10.17820 -10.15400 -9.96038 -9.87961 -9.57396 -9.30723 -9.21548 -8.81311 -8.03102 -6.64627 -5.26584 1.87104 2.35225 3.07843 3.15937 3.23451 3.42158 4.08419 4.13491 4.43386 4.57753 4.64736 4.68202 4.76283 4.81243 4.87802 5.02280 5.10299 5.18022 5.19568 5.22648 5.36706 5.55076 5.57239 5.70579 5.73450 5.78709 5.84137 5.91625 5.92830 5.98740 6.00042 6.10429 6.20709 6.26484 6.28181 6.34953 6.36398 6.51938 6.67996 6.90662 6.97490 7.19829 7.37133 7.69175 8.03088 8.93914 10.28532 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.014910 B = 0.003700 C = 0.003245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1877.506676 B = 7565.569450 C = 8625.380233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.148 4.148 3 C 0.086 3.914 4 O -0.367 6.367 5 C 0.057 3.943 6 H 0.076 0.924 7 C 0.021 3.979 8 O -0.347 6.347 9 C 0.094 3.906 10 C -0.142 4.142 11 C -0.103 4.103 12 C -0.130 4.130 13 C 0.123 3.877 14 N -1.004 6.004 15 S 2.719 3.281 16 O -1.002 7.002 17 O -1.005 7.005 18 C -1.022 5.022 19 H 0.101 0.899 20 C 0.132 3.868 21 N -0.846 5.846 22 Si 0.919 3.081 23 H -0.262 1.262 24 H -0.271 1.271 25 H -0.271 1.271 26 C 0.115 3.885 27 H 0.104 0.896 28 H 0.096 0.904 29 H 0.119 0.881 30 H 0.054 0.946 31 H 0.061 0.939 32 H 0.090 0.910 33 H 0.079 0.921 34 H 0.093 0.907 35 H 0.085 0.915 36 H 0.065 0.935 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.067 0.933 40 H 0.093 0.907 41 H 0.056 0.944 42 H 0.290 0.710 43 H 0.067 0.933 44 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.543 5.585 3.451 19.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.166 4.166 3 C 0.009 3.991 4 O -0.286 6.286 5 C -0.001 4.001 6 H 0.094 0.906 7 C -0.056 4.056 8 O -0.266 6.266 9 C 0.053 3.947 10 C -0.180 4.180 11 C -0.141 4.141 12 C -0.169 4.169 13 C -0.004 4.004 14 N -0.838 5.838 15 S 2.820 3.180 16 O -0.992 6.992 17 O -0.995 6.995 18 C -1.155 5.155 19 H 0.120 0.880 20 C -0.085 4.085 21 N -0.476 5.476 22 Si 0.743 3.257 23 H -0.186 1.186 24 H -0.196 1.196 25 H -0.196 1.196 26 C -0.012 4.012 27 H 0.122 0.878 28 H 0.115 0.885 29 H 0.137 0.863 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.108 0.892 33 H 0.097 0.903 34 H 0.111 0.889 35 H 0.104 0.896 36 H 0.084 0.916 37 H 0.093 0.907 38 H 0.092 0.908 39 H 0.086 0.914 40 H 0.111 0.889 41 H 0.074 0.926 42 H 0.100 0.900 43 H 0.085 0.915 44 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -18.131 5.612 2.362 19.126 hybrid contribution 0.414 -0.826 1.055 1.403 sum -17.717 4.786 3.417 18.668 Atomic orbital electron populations 1.23820 0.95540 1.02181 1.00598 1.22790 0.95632 0.98392 0.99760 1.21610 0.88786 0.95810 0.92856 1.87970 1.44266 1.36411 1.59959 1.23744 0.92493 0.87649 0.96219 0.90579 1.24078 0.88182 0.96430 0.96946 1.88962 1.59828 1.60071 1.17736 1.22261 0.93388 0.96309 0.82719 1.23012 0.94858 1.03592 0.96532 1.21570 0.98101 0.95048 0.99390 1.21836 0.94318 0.98008 1.02747 1.21229 0.99155 0.82789 0.97179 1.58058 1.24104 1.29682 1.71993 1.00407 0.71444 0.72755 0.73415 1.93332 1.73855 1.66257 1.65776 1.93335 1.62855 1.63154 1.80179 1.30732 1.32237 1.41779 1.10795 0.88040 1.24758 0.94257 0.94073 0.95446 1.69916 1.28231 1.35814 1.13626 0.86159 0.79211 0.79434 0.80907 1.18626 1.19613 1.19609 1.21664 0.82317 0.96309 1.00897 0.87805 0.88538 0.86330 0.92777 0.92081 0.89175 0.90269 0.88854 0.89649 0.91607 0.90744 0.90758 0.91405 0.88919 0.92573 0.90010 0.91530 0.88580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.36 14.31 29.01 0.42 -0.95 16 2 C -0.15 -1.35 9.89 -36.03 -0.36 -1.70 16 3 C 0.09 0.82 6.23 36.01 0.22 1.05 16 4 O -0.37 -4.55 10.10 -35.23 -0.36 -4.90 16 5 C 0.06 0.68 3.58 -24.58 -0.09 0.60 16 6 H 0.08 0.76 7.89 -51.93 -0.41 0.35 16 7 C 0.02 0.31 7.35 38.22 0.28 0.59 16 8 O -0.35 -6.02 10.18 -35.23 -0.36 -6.38 16 9 C 0.09 1.42 0.74 -90.33 -0.07 1.35 16 10 C -0.14 -1.69 6.05 -25.20 -0.15 -1.85 16 11 C -0.10 -1.32 4.69 -26.80 -0.13 -1.45 16 12 C -0.13 -1.91 5.96 -26.59 -0.16 -2.07 16 13 C 0.12 2.17 6.46 -3.72 -0.02 2.14 16 14 N -1.00 -21.21 3.26 -113.63 -0.37 -21.58 16 15 S 2.72 74.85 5.01 -107.50 -0.54 74.31 16 16 O -1.00 -29.96 16.61 -57.17 -0.95 -30.91 16 17 O -1.00 -30.26 16.61 -57.17 -0.95 -31.21 16 18 C -1.02 -28.89 9.75 30.60 0.30 -28.59 16 19 H 0.10 2.64 7.81 -52.49 -0.41 2.23 16 20 C 0.13 3.77 5.46 -17.82 -0.10 3.68 16 21 N -0.85 -25.44 13.19 55.43 0.73 -24.71 16 22 Si 0.92 20.95 29.54 -169.99 -5.02 15.93 16 23 H -0.26 -5.75 7.11 56.52 0.40 -5.35 16 24 H -0.27 -5.95 7.11 56.52 0.40 -5.54 16 25 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 26 C 0.12 2.07 5.15 -3.81 -0.02 2.05 16 27 H 0.10 0.64 8.06 -52.48 -0.42 0.22 16 28 H 0.10 0.61 7.90 -52.48 -0.41 0.19 16 29 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 30 H 0.05 0.44 7.83 -51.93 -0.41 0.03 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.08 1.34 8.04 -51.93 -0.42 0.92 16 34 H 0.09 1.13 7.62 -51.93 -0.40 0.73 16 35 H 0.08 0.82 7.69 -51.93 -0.40 0.42 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.07 1.25 7.69 -51.93 -0.40 0.85 16 39 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 40 H 0.09 1.78 6.92 -51.93 -0.36 1.42 16 41 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.29 7.79 8.31 -40.82 -0.34 7.45 16 43 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 44 H 0.10 1.92 6.77 -51.93 -0.35 1.57 16 LS Contribution 369.05 15.07 5.56 5.56 Total: -1.00 -36.46 369.05 -9.03 -45.48 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -6.90 Total: 3.55 kcal Atomic # 6 Polarization: -25.27 SS G_CDS: 0.13 Total: -25.15 kcal Atomic # 7 Polarization: -46.65 SS G_CDS: 0.36 Total: -46.28 kcal Atomic # 8 Polarization: -70.80 SS G_CDS: -2.61 Total: -73.41 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Atomic # 16 Polarization: 74.85 SS G_CDS: -0.54 Total: 74.31 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -36.46 -9.03 -45.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192959631.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.170 kcal (2) G-P(sol) polarization free energy of solvation -36.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds