Wall clock time and date at job start Tue Mar 31 2020 17:38:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50700 * 119.99730 * 2 1 4 4 O 1.42898 * 109.47139 * 135.00098 * 3 2 1 5 5 C 1.42900 * 114.00059 * 179.97438 * 4 3 2 6 6 H 1.09006 * 110.82659 * 32.18836 * 5 4 3 7 7 C 1.55018 * 110.90639 * 268.54658 * 5 4 3 8 8 O 1.44439 * 103.66960 * 204.99963 * 7 5 4 9 9 C 1.43491 * 106.91635 * 39.72108 * 8 7 5 10 10 C 1.53858 * 107.57294 * 333.69595 * 9 8 7 11 11 C 1.52771 * 109.90951 * 214.22530 * 9 8 7 12 12 C 1.53093 * 109.55132 * 299.52807 * 11 9 8 13 13 C 1.53186 * 109.30312 * 299.12854 * 12 11 9 14 14 N 1.46920 * 108.85845 * 54.90109 * 13 12 11 15 15 S 1.65595 * 120.65563 * 126.16356 * 14 13 12 16 16 O 1.42100 * 106.40293 * 203.53979 * 15 14 13 17 17 O 1.42105 * 106.40041 * 336.46018 * 15 14 13 18 18 C 1.76201 * 107.21886 * 89.99560 * 15 14 13 19 19 H 1.08002 * 120.00001 * 0.02562 * 18 15 14 20 20 C 1.37881 * 120.00217 * 179.97438 * 18 15 14 21 21 N 1.31512 * 119.99585 * 0.02562 * 20 18 15 22 22 Si 1.86790 * 120.00132 * 180.02562 * 20 18 15 23 23 H 1.48498 * 109.47269 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.47054 * 120.00426 * 22 20 18 25 25 H 1.48507 * 109.47371 * 240.00294 * 22 20 18 26 26 C 1.46986 * 118.68966 * 306.13868 * 14 13 12 27 27 H 1.08005 * 120.00170 * 180.02562 * 1 2 3 28 28 H 1.08003 * 119.99843 * 0.02562 * 1 2 3 29 29 H 1.07994 * 119.99945 * 179.97438 * 2 1 3 30 30 H 1.08993 * 109.47520 * 14.99470 * 3 2 1 31 31 H 1.09004 * 109.46907 * 254.99812 * 3 2 1 32 32 H 1.09002 * 110.61264 * 86.40979 * 7 5 4 33 33 H 1.08997 * 110.60993 * 323.58645 * 7 5 4 34 34 H 1.09001 * 110.50694 * 120.58051 * 10 9 8 35 35 H 1.08999 * 110.50309 * 243.14176 * 10 9 8 36 36 H 1.08999 * 109.46058 * 59.55677 * 11 9 8 37 37 H 1.09003 * 109.45659 * 179.50663 * 11 9 8 38 38 H 1.09003 * 109.49340 * 59.07788 * 12 11 9 39 39 H 1.09004 * 109.49820 * 179.14365 * 12 11 9 40 40 H 1.08995 * 109.57098 * 174.71652 * 13 12 11 41 41 H 1.09002 * 109.57208 * 295.08441 * 13 12 11 42 42 H 0.97009 * 119.99863 * 179.97438 * 21 20 18 43 43 H 1.08999 * 109.58879 * 293.34927 * 26 14 13 44 44 H 1.09005 * 109.58921 * 172.91563 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1267 1.2414 0.9526 5 6 3.9084 2.4350 1.0320 6 1 3.2958 3.3136 0.8294 7 6 5.1183 2.3692 0.0651 8 8 6.0796 3.2685 0.6596 9 6 6.0151 3.0697 2.0792 10 6 4.6043 2.5541 2.4124 11 6 6.2658 4.3922 2.8017 12 6 7.6570 4.9183 2.4392 13 6 8.7143 3.9037 2.8857 14 7 8.3972 2.5964 2.2949 15 16 9.5289 1.7730 1.4097 16 8 8.8089 0.8960 0.5543 17 8 10.4483 2.7449 0.9307 18 6 10.4249 0.7504 2.5305 19 1 10.1774 0.7554 3.5818 20 6 11.4412 -0.0569 2.0654 21 7 11.7422 -0.0632 0.7852 22 14 12.3906 -1.1414 3.2535 23 1 11.8609 -0.9521 4.6278 24 1 12.2370 -2.5639 2.8559 25 1 13.8283 -0.7709 3.2213 26 6 7.0558 2.0335 2.5056 27 1 -0.5401 -0.9353 0.0004 28 1 -0.5400 0.9353 -0.0004 29 1 1.8500 -0.9353 0.0004 30 1 1.3855 2.1161 0.2659 31 1 2.4755 1.4868 -0.9927 32 1 4.8341 2.7139 -0.9291 33 1 5.5180 1.3562 0.0191 34 1 4.6585 1.5783 2.8952 35 1 4.0783 3.2654 3.0491 36 1 5.5124 5.1196 2.4994 37 1 6.2065 4.2345 3.8786 38 1 7.7223 5.0610 1.3605 39 1 7.8290 5.8694 2.9431 40 1 9.6980 4.2285 2.5471 41 1 8.7081 3.8244 3.9728 42 1 12.4575 -0.6309 0.4580 43 1 6.9218 1.7934 3.5603 44 1 6.9399 1.1308 1.9056 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192959631.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:38:03 Heat of formation + Delta-G solvation = -186.351030 kcal Electronic energy + Delta-G solvation = -27917.522879 eV Core-core repulsion = 23960.762515 eV Total energy + Delta-G solvation = -3956.760364 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.133 amu Computer time = 2.41 seconds Orbital eigenvalues (eV) -41.43303 -39.01102 -37.55882 -37.32679 -36.12228 -35.20182 -34.80488 -33.26018 -32.52649 -30.79685 -28.28332 -26.99614 -26.77199 -25.52850 -23.22873 -22.35305 -21.02667 -20.87333 -20.63068 -18.93863 -18.34776 -18.20257 -17.37088 -16.99815 -16.79629 -16.52907 -16.22768 -16.02548 -15.90344 -15.29950 -15.22868 -14.89459 -14.48301 -14.22157 -14.02020 -13.96506 -13.80215 -13.49918 -13.39068 -13.29643 -13.05442 -12.92881 -12.56400 -12.49175 -12.44565 -12.30464 -12.29557 -12.02615 -11.88880 -11.78179 -11.57700 -11.32078 -11.29027 -10.99814 -10.94118 -10.62911 -10.19290 -9.61187 -8.75804 -7.51568 0.31928 1.23574 1.30760 1.30945 1.49617 2.18791 2.51136 2.54944 2.84429 3.14448 3.47409 3.63832 3.69839 3.81224 3.93230 3.99355 4.08373 4.14148 4.18750 4.19436 4.31293 4.43050 4.46864 4.55075 4.56961 4.61817 4.66287 4.67588 4.76659 4.83764 4.91744 4.93285 4.99240 5.02670 5.08370 5.21152 5.25228 5.40856 5.48470 5.66691 5.71619 5.87589 5.90717 6.08284 6.25849 6.74861 8.18895 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.014910 B = 0.003700 C = 0.003245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1877.506676 B = 7565.569450 C = 8625.380233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.178 4.178 3 C 0.081 3.919 4 O -0.387 6.387 5 C 0.069 3.931 6 H 0.107 0.893 7 C 0.011 3.989 8 O -0.377 6.377 9 C 0.088 3.912 10 C -0.134 4.134 11 C -0.098 4.098 12 C -0.127 4.127 13 C 0.111 3.889 14 N -1.002 6.002 15 S 2.717 3.283 16 O -1.042 7.042 17 O -1.045 7.045 18 C -1.042 5.042 19 H 0.119 0.881 20 C 0.066 3.934 21 N -0.897 5.897 22 Si 0.993 3.007 23 H -0.245 1.245 24 H -0.258 1.258 25 H -0.257 1.257 26 C 0.104 3.896 27 H 0.115 0.885 28 H 0.113 0.887 29 H 0.105 0.895 30 H 0.077 0.923 31 H 0.060 0.940 32 H 0.103 0.897 33 H 0.040 0.960 34 H 0.088 0.912 35 H 0.124 0.876 36 H 0.093 0.907 37 H 0.106 0.894 38 H 0.042 0.958 39 H 0.105 0.895 40 H 0.066 0.934 41 H 0.092 0.908 42 H 0.299 0.701 43 H 0.099 0.901 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.835 6.589 6.512 22.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.196 4.196 3 C 0.005 3.995 4 O -0.306 6.306 5 C 0.010 3.990 6 H 0.125 0.875 7 C -0.066 4.066 8 O -0.297 6.297 9 C 0.047 3.953 10 C -0.172 4.172 11 C -0.135 4.135 12 C -0.166 4.166 13 C -0.014 4.014 14 N -0.840 5.840 15 S 2.819 3.181 16 O -1.033 7.033 17 O -1.035 7.035 18 C -1.175 5.175 19 H 0.137 0.863 20 C -0.146 4.146 21 N -0.529 5.529 22 Si 0.811 3.189 23 H -0.167 1.167 24 H -0.183 1.183 25 H -0.181 1.181 26 C -0.022 4.022 27 H 0.133 0.867 28 H 0.131 0.869 29 H 0.123 0.877 30 H 0.095 0.905 31 H 0.078 0.922 32 H 0.121 0.879 33 H 0.059 0.941 34 H 0.106 0.894 35 H 0.143 0.857 36 H 0.111 0.889 37 H 0.124 0.876 38 H 0.061 0.939 39 H 0.124 0.876 40 H 0.084 0.916 41 H 0.110 0.890 42 H 0.109 0.891 43 H 0.117 0.883 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -20.443 6.629 5.406 22.161 hybrid contribution 1.046 -1.124 0.053 1.536 sum -19.397 5.505 5.459 20.889 Atomic orbital electron populations 1.24052 0.94843 1.03534 0.97651 1.22784 0.96409 0.97855 1.02539 1.21795 0.88495 0.96814 0.92373 1.87956 1.45026 1.36992 1.60659 1.23692 0.91548 0.88619 0.95097 0.87542 1.24175 0.89360 0.94202 0.98845 1.88938 1.60978 1.60253 1.19487 1.22472 0.94040 0.96898 0.81896 1.23022 0.92986 1.04280 0.96927 1.21652 0.97098 0.93899 1.00870 1.21832 0.94807 0.98755 1.01183 1.21589 0.99167 0.81701 0.98949 1.57524 1.24180 1.30626 1.71661 1.00008 0.71674 0.72455 0.73921 1.93270 1.74548 1.67616 1.67820 1.93268 1.64763 1.63974 1.81537 1.31063 1.32702 1.42101 1.11647 0.86271 1.26118 0.95349 0.95657 0.97504 1.70019 1.29453 1.37293 1.16095 0.85070 0.77921 0.77355 0.78596 1.16749 1.18269 1.18120 1.22014 0.81576 0.96330 1.02270 0.86662 0.86900 0.87703 0.90522 0.92167 0.87887 0.94138 0.89381 0.85747 0.88878 0.87569 0.93880 0.87632 0.91555 0.89011 0.89135 0.88288 0.92023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.08 14.31 67.78 0.97 -1.11 16 2 C -0.18 -3.11 9.89 25.64 0.25 -2.86 16 3 C 0.08 1.46 6.23 71.24 0.44 1.90 16 4 O -0.39 -9.27 10.10 -148.98 -1.50 -10.77 16 5 C 0.07 1.53 3.58 31.99 0.11 1.64 16 6 H 0.11 1.75 7.89 -2.38 -0.02 1.73 16 7 C 0.01 0.35 7.35 72.67 0.53 0.88 16 8 O -0.38 -13.30 10.18 -148.98 -1.52 -14.81 16 9 C 0.09 2.50 0.74 -10.60 -0.01 2.49 16 10 C -0.13 -2.83 6.05 31.58 0.19 -2.64 16 11 C -0.10 -2.12 4.69 30.55 0.14 -1.97 16 12 C -0.13 -3.46 5.96 30.69 0.18 -3.28 16 13 C 0.11 3.84 6.46 86.36 0.56 4.39 16 14 N -1.00 -43.15 3.26 -513.42 -1.68 -44.83 16 15 S 2.72 157.39 5.01 -56.49 -0.28 157.10 16 16 O -1.04 -66.78 16.61 -128.00 -2.13 -68.91 16 17 O -1.05 -66.74 16.61 -128.00 -2.13 -68.87 16 18 C -1.04 -60.27 9.75 67.74 0.66 -59.61 16 19 H 0.12 6.21 7.81 -2.91 -0.02 6.18 16 20 C 0.07 3.82 5.46 84.66 0.46 4.29 16 21 N -0.90 -55.97 13.19 21.45 0.28 -55.69 16 22 Si 0.99 42.63 29.54 68.60 2.03 44.66 16 23 H -0.24 -9.69 7.11 99.48 0.71 -8.99 16 24 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 25 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 26 C 0.10 3.75 5.15 86.26 0.44 4.19 16 27 H 0.12 1.17 8.06 -2.91 -0.02 1.15 16 28 H 0.11 1.06 7.90 -2.91 -0.02 1.04 16 29 H 0.10 2.05 8.06 -2.91 -0.02 2.03 16 30 H 0.08 1.02 7.83 -2.39 -0.02 1.00 16 31 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 32 H 0.10 2.73 8.14 -2.39 -0.02 2.71 16 33 H 0.04 1.51 8.04 -2.39 -0.02 1.49 16 34 H 0.09 1.96 7.62 -2.39 -0.02 1.94 16 35 H 0.12 1.70 7.69 -2.39 -0.02 1.68 16 36 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.04 1.44 7.69 -2.39 -0.02 1.42 16 39 H 0.11 2.09 8.14 -2.39 -0.02 2.07 16 40 H 0.07 2.62 6.92 -2.39 -0.02 2.60 16 41 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 42 H 0.30 16.63 8.31 -92.70 -0.77 15.86 16 43 H 0.10 2.85 8.14 -2.39 -0.02 2.83 16 44 H 0.06 2.63 6.77 -2.38 -0.02 2.61 16 Total: -1.00 -86.11 369.05 -0.99 -87.11 By element: Atomic # 1 Polarization: 25.71 SS G_CDS: 0.98 Total: 26.69 kcal Atomic # 6 Polarization: -56.63 SS G_CDS: 4.95 Total: -51.68 kcal Atomic # 7 Polarization: -99.12 SS G_CDS: -1.39 Total: -100.51 kcal Atomic # 8 Polarization: -156.09 SS G_CDS: -7.27 Total: -163.36 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.66 kcal Atomic # 16 Polarization: 157.39 SS G_CDS: -0.28 Total: 157.10 kcal Total: -86.11 -0.99 -87.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192959631.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.245 kcal (2) G-P(sol) polarization free energy of solvation -86.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.41 seconds