Wall clock time and date at job start Tue Mar 31 2020 16:19:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35851 * 120.58224 * 2 1 4 4 C 1.40905 * 119.87580 * 180.02562 * 3 2 1 5 5 O 1.21812 * 119.48184 * 179.97438 * 4 3 2 6 6 O 1.34414 * 121.03140 * 359.96571 * 4 3 2 7 7 C 1.35150 * 120.90649 * 0.03496 * 6 4 3 8 8 C 1.38579 * 120.46977 * 179.97438 * 7 6 4 9 9 C 1.38633 * 120.09081 * 180.02562 * 8 7 6 10 10 O 1.35750 * 119.70465 * 179.97438 * 9 8 7 11 11 C 1.39131 * 120.58804 * 359.74879 * 9 8 7 12 12 C 1.38060 * 120.23817 * 0.48216 * 11 9 8 13 13 O 1.35703 * 120.18847 * 179.79226 * 12 11 9 14 14 C 1.42894 * 117.00731 * 5.71033 * 13 12 11 15 15 H 1.08998 * 110.63697 * 33.02080 * 14 13 12 16 16 C 1.55150 * 110.72521 * 156.16493 * 14 13 12 17 17 C 1.54905 * 101.58168 * 154.04196 * 16 14 13 18 18 N 1.47422 * 104.83710 * 322.99096 * 17 16 14 19 19 C 1.36931 * 125.65140 * 204.09069 * 18 17 16 20 20 H 1.08010 * 119.99711 * 180.02562 * 19 18 17 21 21 C 1.38811 * 120.00256 * 0.02562 * 19 18 17 22 22 N 1.31621 * 119.99663 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00284 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47395 * 180.02562 * 23 21 19 25 25 H 1.48506 * 109.47064 * 300.00209 * 23 21 19 26 26 H 1.48494 * 109.47199 * 60.00061 * 23 21 19 27 27 C 1.47025 * 108.69962 * 24.35737 * 18 17 16 28 28 C 1.40640 * 119.61270 * 359.52308 * 12 11 9 29 29 H 1.09004 * 109.46837 * 262.82020 * 1 2 3 30 30 H 1.09003 * 109.47131 * 22.81947 * 1 2 3 31 31 H 1.09000 * 109.46934 * 142.82221 * 1 2 3 32 32 H 1.08004 * 120.06211 * 359.97438 * 3 2 1 33 33 H 1.07992 * 119.95788 * 0.02562 * 8 7 6 34 34 H 0.96696 * 113.99985 * 89.99849 * 10 9 8 35 35 H 1.08005 * 119.87654 * 180.28223 * 11 9 8 36 36 H 1.09007 * 111.00014 * 35.97037 * 16 14 13 37 37 H 1.09001 * 111.00716 * 272.12231 * 16 14 13 38 38 H 1.09006 * 110.37079 * 204.15491 * 17 16 14 39 39 H 1.09000 * 110.36500 * 81.83504 * 17 16 14 40 40 H 0.96993 * 119.99632 * 179.97438 * 22 21 19 41 41 H 1.08997 * 109.88332 * 118.12641 * 27 18 17 42 42 H 1.08999 * 109.88408 * 239.29679 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1982 1.1695 0.0000 4 6 3.6072 1.1522 -0.0005 5 8 4.2197 2.2051 -0.0010 6 8 4.2858 -0.0081 -0.0004 7 6 3.6354 -1.1927 -0.0004 8 6 4.3442 -2.3836 -0.0008 9 6 3.6690 -3.5943 -0.0013 10 8 4.3711 -4.7561 -0.0022 11 6 2.2781 -3.6293 0.0038 12 6 1.5530 -2.4544 -0.0006 13 8 0.1965 -2.4898 0.0000 14 6 -0.4192 -3.7725 0.1321 15 1 0.1859 -4.4262 0.7603 16 6 -1.8548 -3.6362 0.7043 17 6 -2.5343 -4.9117 0.1466 18 7 -1.9655 -5.0832 -1.2026 19 6 -2.5567 -5.7561 -2.2383 20 1 -2.0558 -5.8260 -3.1927 21 6 -3.7997 -6.3483 -2.0618 22 7 -4.4102 -6.2626 -0.8989 23 14 -4.6059 -7.2669 -3.4745 24 1 -5.9185 -7.8020 -3.0321 25 1 -4.8094 -6.3391 -4.6161 26 1 -3.7308 -8.3891 -3.8986 27 6 -0.6554 -4.4176 -1.2500 28 6 2.2286 -1.2209 -0.0001 29 1 -0.3633 -0.1284 1.0197 30 1 -0.3633 0.9473 -0.3986 31 1 -0.3633 -0.8188 -0.6210 32 1 1.6688 2.1109 -0.0004 33 1 5.4240 -2.3684 -0.0006 34 1 4.5748 -5.0933 0.8809 35 1 1.7638 -4.5791 0.0079 36 1 -2.3421 -2.7371 0.3269 37 1 -1.8435 -3.6442 1.7942 38 1 -3.6138 -4.7719 0.0882 39 1 -2.2958 -5.7725 0.7712 40 1 -5.2789 -6.6761 -0.7756 41 1 0.1250 -5.1495 -1.4579 42 1 -0.6588 -3.6470 -2.0209 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226484423.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:19:06 Heat of formation + Delta-G solvation = -71.335771 kcal Electronic energy + Delta-G solvation = -28413.845764 eV Core-core repulsion = 24326.628884 eV Total energy + Delta-G solvation = -4087.216879 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 1.80 seconds Orbital eigenvalues (eV) -42.24033 -40.44255 -38.99614 -37.94352 -37.14103 -35.91866 -35.03575 -32.47649 -30.38348 -29.75159 -29.20956 -28.84992 -27.53147 -24.87541 -24.51170 -23.38658 -22.24497 -21.09016 -20.46992 -19.65494 -18.74062 -18.08605 -17.46355 -17.28936 -17.00225 -16.84116 -15.90893 -15.47900 -15.27005 -15.00172 -14.86326 -14.42170 -14.11093 -13.90107 -13.61870 -13.40774 -13.37846 -13.17929 -12.77256 -12.59765 -12.37352 -12.10153 -11.87035 -11.64377 -11.41782 -11.19552 -11.13098 -10.87536 -10.62975 -10.42272 -10.40812 -10.30559 -10.20630 -10.00696 -9.77577 -8.81025 -8.72778 -8.28549 -7.03951 -5.81557 -3.24468 -0.04500 0.76745 1.30966 2.13551 2.58609 2.85648 3.32580 3.34603 3.37359 3.38193 3.73848 4.07393 4.14184 4.35453 4.35571 4.60861 4.75117 4.78665 4.98555 5.03840 5.20482 5.23710 5.32863 5.36356 5.43060 5.50347 5.52884 5.59030 5.67906 5.86911 5.92013 5.99728 6.04508 6.16986 6.27828 6.30559 6.33913 6.43691 6.97781 7.11626 7.23604 7.25909 7.33585 7.45160 7.65529 8.16822 9.04718 9.64840 10.26031 11.22832 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.017862 B = 0.003044 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.195094 B = 9195.069033 C =10049.803779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.067 3.933 3 C -0.293 4.293 4 C 0.513 3.487 5 O -0.476 6.476 6 O -0.269 6.269 7 C 0.204 3.796 8 C -0.214 4.214 9 C 0.215 3.785 10 O -0.489 6.489 11 C -0.265 4.265 12 C 0.228 3.772 13 O -0.279 6.279 14 C 0.057 3.943 15 H 0.083 0.917 16 C -0.134 4.134 17 C 0.152 3.848 18 N -0.599 5.599 19 C -0.228 4.228 20 H 0.079 0.921 21 C -0.007 4.007 22 N -0.923 5.923 23 Si 0.918 3.082 24 H -0.289 1.289 25 H -0.284 1.284 26 H -0.284 1.284 27 C 0.119 3.881 28 C -0.203 4.203 29 H 0.091 0.909 30 H 0.075 0.925 31 H 0.107 0.893 32 H 0.160 0.840 33 H 0.149 0.851 34 H 0.402 0.598 35 H 0.153 0.847 36 H 0.076 0.924 37 H 0.069 0.931 38 H 0.116 0.884 39 H 0.017 0.983 40 H 0.255 0.745 41 H 0.029 0.971 42 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.399 7.434 6.704 15.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.066 3.934 3 C -0.312 4.312 4 C 0.364 3.636 5 O -0.365 6.365 6 O -0.181 6.181 7 C 0.158 3.842 8 C -0.233 4.233 9 C 0.170 3.830 10 O -0.301 6.301 11 C -0.285 4.285 12 C 0.179 3.821 13 O -0.190 6.190 14 C 0.001 3.999 15 H 0.101 0.899 16 C -0.173 4.173 17 C 0.027 3.973 18 N -0.327 5.327 19 C -0.356 4.356 20 H 0.097 0.903 21 C -0.203 4.203 22 N -0.571 5.571 23 Si 0.748 3.252 24 H -0.214 1.214 25 H -0.210 1.210 26 H -0.211 1.211 27 C -0.007 4.007 28 C -0.205 4.205 29 H 0.109 0.891 30 H 0.094 0.906 31 H 0.125 0.875 32 H 0.177 0.823 33 H 0.167 0.833 34 H 0.261 0.739 35 H 0.171 0.829 36 H 0.094 0.906 37 H 0.087 0.913 38 H 0.133 0.867 39 H 0.035 0.965 40 H 0.066 0.934 41 H 0.047 0.953 42 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 12.492 8.032 6.041 16.033 hybrid contribution -0.261 -0.843 -0.234 0.913 sum 12.231 7.189 5.807 15.330 Atomic orbital electron populations 1.21296 0.88417 1.04463 1.04665 1.20434 0.97758 0.90662 0.84517 1.22176 0.92586 1.00296 1.16172 1.19226 0.88272 0.80930 0.75215 1.90968 1.72112 1.25443 1.48002 1.83724 1.42938 1.13852 1.77550 1.18387 0.88538 0.83657 0.93602 1.20478 1.01545 0.88413 1.12862 1.17859 0.88593 0.84808 0.91766 1.84757 1.74625 1.36627 1.34073 1.21623 0.94169 0.99209 1.13456 1.18567 0.83939 0.91476 0.88126 1.86379 1.14562 1.33362 1.84681 1.23994 0.95120 0.81746 0.98996 0.89873 1.23244 0.91749 1.02757 0.99530 1.22027 1.01307 0.89915 0.84045 1.44347 1.15357 1.62852 1.10126 1.19028 0.99881 1.25994 0.90678 0.90344 1.24794 0.97370 1.00768 0.97362 1.69720 1.16322 1.48992 1.22056 0.86109 0.78567 0.79528 0.81039 1.21442 1.20999 1.21078 1.21681 0.90224 0.95390 0.93424 1.17392 0.91725 0.92786 1.18572 0.89110 0.90630 0.87507 0.82255 0.83300 0.73935 0.82912 0.90551 0.91270 0.86668 0.96459 0.93425 0.95332 0.94583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.32 8.78 36.01 0.32 -1.01 16 2 C 0.07 0.77 5.92 -104.11 -0.62 0.15 16 3 C -0.29 -3.42 9.58 -39.43 -0.38 -3.80 16 4 C 0.51 7.23 7.91 31.74 0.25 7.48 16 5 O -0.48 -7.99 17.92 -19.58 -0.35 -8.34 16 6 O -0.27 -3.64 9.86 -21.65 -0.21 -3.85 16 7 C 0.20 2.48 6.74 -38.52 -0.26 2.22 16 8 C -0.21 -2.24 9.91 -39.31 -0.39 -2.63 16 9 C 0.22 2.22 6.69 -39.10 -0.26 1.96 16 10 O -0.49 -4.24 13.48 -18.96 -0.26 -4.50 16 11 C -0.27 -3.06 8.82 -39.32 -0.35 -3.40 16 12 C 0.23 2.81 6.65 -38.74 -0.26 2.56 16 13 O -0.28 -3.68 5.88 -18.81 -0.11 -3.79 16 14 C 0.06 0.85 2.73 -24.89 -0.07 0.78 16 15 H 0.08 1.12 6.27 -51.93 -0.33 0.79 16 16 C -0.13 -2.17 6.81 -24.59 -0.17 -2.33 16 17 C 0.15 3.30 5.89 -2.53 -0.01 3.28 16 18 N -0.60 -14.17 3.39 -170.06 -0.58 -14.74 16 19 C -0.23 -6.01 10.27 -15.06 -0.15 -6.16 16 20 H 0.08 2.01 7.83 -52.48 -0.41 1.60 16 21 C -0.01 -0.19 5.49 -17.43 -0.10 -0.29 16 22 N -0.92 -25.29 10.09 55.49 0.56 -24.73 16 23 Si 0.92 21.09 29.55 -169.99 -5.02 16.07 16 24 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 25 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 26 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 27 C 0.12 2.25 6.80 -3.05 -0.02 2.23 16 28 C -0.20 -2.49 5.75 -106.69 -0.61 -3.10 16 29 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.07 0.63 8.04 -51.93 -0.42 0.21 16 31 H 0.11 1.24 5.61 -51.93 -0.29 0.95 16 32 H 0.16 1.57 8.05 -52.48 -0.42 1.14 16 33 H 0.15 1.31 8.06 -52.49 -0.42 0.89 16 34 H 0.40 1.36 9.06 45.56 0.41 1.78 16 35 H 0.15 1.77 5.59 -52.48 -0.29 1.48 16 36 H 0.08 1.23 8.14 -51.92 -0.42 0.81 16 37 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.12 2.86 5.87 -51.93 -0.30 2.56 16 39 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 40 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 41 H 0.03 0.54 7.79 -51.93 -0.40 0.13 16 42 H 0.04 0.70 8.06 -51.93 -0.42 0.29 16 LS Contribution 347.35 15.07 5.23 5.23 Total: -1.00 -31.18 347.35 -7.94 -39.12 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: -4.12 Total: 1.60 kcal Atomic # 6 Polarization: 1.00 SS G_CDS: -3.08 Total: -2.07 kcal Atomic # 7 Polarization: -39.46 SS G_CDS: -0.02 Total: -39.47 kcal Atomic # 8 Polarization: -19.55 SS G_CDS: -0.93 Total: -20.48 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.18 -7.94 -39.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226484423.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.212 kcal (2) G-P(sol) polarization free energy of solvation -31.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.80 seconds