Wall clock time and date at job start Tue Mar 31 2020 16:19:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35851 * 120.58224 * 2 1 4 4 C 1.40905 * 119.87580 * 180.02562 * 3 2 1 5 5 O 1.21812 * 119.48184 * 179.97438 * 4 3 2 6 6 O 1.34414 * 121.03140 * 359.96571 * 4 3 2 7 7 C 1.35150 * 120.90649 * 0.03496 * 6 4 3 8 8 C 1.38579 * 120.46977 * 179.97438 * 7 6 4 9 9 C 1.38633 * 120.09081 * 180.02562 * 8 7 6 10 10 O 1.35750 * 119.70465 * 179.97438 * 9 8 7 11 11 C 1.39131 * 120.58804 * 359.74879 * 9 8 7 12 12 C 1.38060 * 120.23817 * 0.48216 * 11 9 8 13 13 O 1.35703 * 120.18847 * 179.79226 * 12 11 9 14 14 C 1.42894 * 117.00731 * 5.71033 * 13 12 11 15 15 H 1.08998 * 110.63697 * 33.02080 * 14 13 12 16 16 C 1.55150 * 110.72521 * 156.16493 * 14 13 12 17 17 C 1.54905 * 101.58168 * 154.04196 * 16 14 13 18 18 N 1.47422 * 104.83710 * 322.99096 * 17 16 14 19 19 C 1.36931 * 125.65140 * 204.09069 * 18 17 16 20 20 H 1.08010 * 119.99711 * 180.02562 * 19 18 17 21 21 C 1.38811 * 120.00256 * 0.02562 * 19 18 17 22 22 N 1.31621 * 119.99663 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00284 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47395 * 180.02562 * 23 21 19 25 25 H 1.48506 * 109.47064 * 300.00209 * 23 21 19 26 26 H 1.48494 * 109.47199 * 60.00061 * 23 21 19 27 27 C 1.47025 * 108.69962 * 24.35737 * 18 17 16 28 28 C 1.40640 * 119.61270 * 359.52308 * 12 11 9 29 29 H 1.09004 * 109.46837 * 262.82020 * 1 2 3 30 30 H 1.09003 * 109.47131 * 22.81947 * 1 2 3 31 31 H 1.09000 * 109.46934 * 142.82221 * 1 2 3 32 32 H 1.08004 * 120.06211 * 359.97438 * 3 2 1 33 33 H 1.07992 * 119.95788 * 0.02562 * 8 7 6 34 34 H 0.96696 * 113.99985 * 89.99849 * 10 9 8 35 35 H 1.08005 * 119.87654 * 180.28223 * 11 9 8 36 36 H 1.09007 * 111.00014 * 35.97037 * 16 14 13 37 37 H 1.09001 * 111.00716 * 272.12231 * 16 14 13 38 38 H 1.09006 * 110.37079 * 204.15491 * 17 16 14 39 39 H 1.09000 * 110.36500 * 81.83504 * 17 16 14 40 40 H 0.96993 * 119.99632 * 179.97438 * 22 21 19 41 41 H 1.08997 * 109.88332 * 118.12641 * 27 18 17 42 42 H 1.08999 * 109.88408 * 239.29679 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1982 1.1695 0.0000 4 6 3.6072 1.1522 -0.0005 5 8 4.2197 2.2051 -0.0010 6 8 4.2858 -0.0081 -0.0004 7 6 3.6354 -1.1927 -0.0004 8 6 4.3442 -2.3836 -0.0008 9 6 3.6690 -3.5943 -0.0013 10 8 4.3711 -4.7561 -0.0022 11 6 2.2781 -3.6293 0.0038 12 6 1.5530 -2.4544 -0.0006 13 8 0.1965 -2.4898 0.0000 14 6 -0.4192 -3.7725 0.1321 15 1 0.1859 -4.4262 0.7603 16 6 -1.8548 -3.6362 0.7043 17 6 -2.5343 -4.9117 0.1466 18 7 -1.9655 -5.0832 -1.2026 19 6 -2.5567 -5.7561 -2.2383 20 1 -2.0558 -5.8260 -3.1927 21 6 -3.7997 -6.3483 -2.0618 22 7 -4.4102 -6.2626 -0.8989 23 14 -4.6059 -7.2669 -3.4745 24 1 -5.9185 -7.8020 -3.0321 25 1 -4.8094 -6.3391 -4.6161 26 1 -3.7308 -8.3891 -3.8986 27 6 -0.6554 -4.4176 -1.2500 28 6 2.2286 -1.2209 -0.0001 29 1 -0.3633 -0.1284 1.0197 30 1 -0.3633 0.9473 -0.3986 31 1 -0.3633 -0.8188 -0.6210 32 1 1.6688 2.1109 -0.0004 33 1 5.4240 -2.3684 -0.0006 34 1 4.5748 -5.0933 0.8809 35 1 1.7638 -4.5791 0.0079 36 1 -2.3421 -2.7371 0.3269 37 1 -1.8435 -3.6442 1.7942 38 1 -3.6138 -4.7719 0.0882 39 1 -2.2958 -5.7725 0.7712 40 1 -5.2789 -6.6761 -0.7756 41 1 0.1250 -5.1495 -1.4579 42 1 -0.6588 -3.6470 -2.0209 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226484423.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:19:03 Heat of formation + Delta-G solvation = -90.180018 kcal Electronic energy + Delta-G solvation = -28414.662912 eV Core-core repulsion = 24326.628884 eV Total energy + Delta-G solvation = -4088.034027 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 1.82 seconds Orbital eigenvalues (eV) -43.21560 -41.48348 -39.96096 -38.95502 -38.46733 -37.05786 -35.90747 -34.27974 -31.49920 -31.05134 -30.39731 -29.70205 -28.98312 -26.57755 -25.54531 -24.35364 -23.25411 -22.25836 -22.11156 -20.66624 -19.73915 -19.09146 -18.87577 -18.34284 -18.14756 -17.91917 -16.92736 -16.81895 -16.63447 -16.08820 -15.96264 -15.66945 -15.44219 -14.99856 -14.67584 -14.46720 -14.34240 -14.27558 -14.19738 -13.70016 -13.53782 -13.47188 -13.19127 -12.97858 -12.73391 -12.63593 -12.48165 -12.07574 -12.05675 -11.96204 -11.77936 -11.55317 -11.47604 -11.36822 -11.15958 -10.75443 -9.67139 -9.21353 -8.92709 -7.80091 -5.24540 -0.94699 -0.17037 0.40033 1.15943 1.48717 1.50218 1.56625 1.63926 1.78910 2.43638 2.49265 2.94997 3.15724 3.26440 3.31458 3.46637 3.56150 3.63572 3.74517 3.86974 3.95583 4.00529 4.08114 4.34309 4.40355 4.56670 4.61283 4.69030 4.73565 4.79750 4.82509 4.88910 4.90623 5.02135 5.07583 5.15168 5.18256 5.44879 5.46721 5.59939 5.77606 5.97697 6.09886 6.29792 6.30196 6.69497 7.08857 7.74379 8.35059 9.21360 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.017862 B = 0.003044 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.195094 B = 9195.069033 C =10049.803779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.074 3.926 3 C -0.296 4.296 4 C 0.509 3.491 5 O -0.514 6.514 6 O -0.277 6.277 7 C 0.191 3.809 8 C -0.207 4.207 9 C 0.230 3.770 10 O -0.494 6.494 11 C -0.267 4.267 12 C 0.218 3.782 13 O -0.274 6.274 14 C 0.077 3.923 15 H 0.105 0.895 16 C -0.118 4.118 17 C 0.152 3.848 18 N -0.622 5.622 19 C -0.243 4.243 20 H 0.078 0.922 21 C -0.059 4.059 22 N -0.945 5.945 23 Si 0.977 3.023 24 H -0.292 1.292 25 H -0.279 1.279 26 H -0.279 1.279 27 C 0.116 3.884 28 C -0.211 4.211 29 H 0.103 0.897 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.177 0.823 33 H 0.166 0.834 34 H 0.427 0.573 35 H 0.154 0.846 36 H 0.077 0.923 37 H 0.101 0.899 38 H 0.081 0.919 39 H 0.000 1.000 40 H 0.249 0.751 41 H 0.032 0.968 42 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.353 7.353 7.103 16.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.073 3.927 3 C -0.315 4.315 4 C 0.362 3.638 5 O -0.407 6.407 6 O -0.188 6.188 7 C 0.146 3.854 8 C -0.226 4.226 9 C 0.184 3.816 10 O -0.310 6.310 11 C -0.286 4.286 12 C 0.170 3.830 13 O -0.186 6.186 14 C 0.021 3.979 15 H 0.123 0.877 16 C -0.157 4.157 17 C 0.027 3.973 18 N -0.349 5.349 19 C -0.372 4.372 20 H 0.096 0.904 21 C -0.252 4.252 22 N -0.594 5.594 23 Si 0.805 3.195 24 H -0.218 1.218 25 H -0.205 1.205 26 H -0.206 1.206 27 C -0.010 4.010 28 C -0.212 4.212 29 H 0.121 0.879 30 H 0.112 0.888 31 H 0.111 0.889 32 H 0.194 0.806 33 H 0.184 0.816 34 H 0.290 0.710 35 H 0.172 0.828 36 H 0.096 0.904 37 H 0.120 0.880 38 H 0.099 0.901 39 H 0.018 0.982 40 H 0.059 0.941 41 H 0.050 0.950 42 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 13.480 7.939 6.459 16.925 hybrid contribution -0.442 -0.910 -0.371 1.078 sum 13.038 7.029 6.087 16.014 Atomic orbital electron populations 1.21321 0.87174 1.04880 1.05173 1.20610 0.98526 0.90217 0.83338 1.22218 0.91325 1.01271 1.16683 1.19557 0.89020 0.80607 0.74589 1.90942 1.72871 1.26694 1.50192 1.83675 1.43445 1.14232 1.77494 1.18600 0.88782 0.83573 0.94458 1.20690 1.02443 0.87825 1.11605 1.17774 0.88195 0.85268 0.90407 1.84710 1.74179 1.35787 1.36299 1.21702 0.94780 0.98858 1.13277 1.18586 0.83478 0.91860 0.89094 1.86399 1.15199 1.31833 1.85141 1.23637 0.95092 0.82647 0.96519 0.87686 1.23018 0.91811 0.99603 1.01238 1.21807 0.99947 0.92007 0.83539 1.44613 1.17292 1.62870 1.10175 1.19350 1.00231 1.25996 0.91591 0.90431 1.25543 0.98072 1.02048 0.99542 1.69967 1.16223 1.49729 1.23478 0.85185 0.77341 0.78436 0.78556 1.21814 1.20492 1.20560 1.21810 0.88178 0.95102 0.95905 1.17500 0.91901 0.93083 1.18747 0.87878 0.88783 0.88920 0.80550 0.81609 0.71030 0.82825 0.90414 0.88040 0.90149 0.98222 0.94095 0.94973 0.95342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.28 8.78 71.24 0.63 -1.65 16 2 C 0.07 1.55 5.92 -19.53 -0.12 1.44 16 3 C -0.30 -6.52 9.58 22.37 0.21 -6.31 16 4 C 0.51 14.11 7.91 68.47 0.54 14.65 16 5 O -0.51 -17.39 17.92 18.88 0.34 -17.05 16 6 O -0.28 -7.26 9.86 11.47 0.11 -7.15 16 7 C 0.19 4.32 6.74 22.96 0.15 4.48 16 8 C -0.21 -3.82 9.91 22.45 0.22 -3.59 16 9 C 0.23 4.06 6.69 22.58 0.15 4.21 16 10 O -0.49 -6.93 13.48 -90.76 -1.22 -8.16 16 11 C -0.27 -5.44 8.82 22.44 0.20 -5.24 16 12 C 0.22 4.88 6.65 22.81 0.15 5.03 16 13 O -0.27 -6.59 5.88 -90.24 -0.53 -7.13 16 14 C 0.08 2.12 2.73 31.79 0.09 2.21 16 15 H 0.11 2.49 6.27 -2.39 -0.01 2.48 16 16 C -0.12 -3.60 6.81 31.98 0.22 -3.38 16 17 C 0.15 6.62 5.89 86.85 0.51 7.13 16 18 N -0.62 -29.51 3.39 -691.96 -2.35 -31.85 16 19 C -0.24 -12.93 10.27 84.03 0.86 -12.07 16 20 H 0.08 4.01 7.83 -2.91 -0.02 3.98 16 21 C -0.06 -3.17 5.49 84.86 0.47 -2.71 16 22 N -0.94 -52.92 10.09 21.65 0.22 -52.70 16 23 Si 0.98 43.66 29.55 68.60 2.03 45.69 16 24 H -0.29 -13.10 7.11 99.48 0.71 -12.40 16 25 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 26 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 27 C 0.12 4.26 6.80 86.73 0.59 4.85 16 28 C -0.21 -4.76 5.75 -21.20 -0.12 -4.88 16 29 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.09 1.30 8.04 -2.39 -0.02 1.29 16 31 H 0.09 1.97 5.61 -2.39 -0.01 1.95 16 32 H 0.18 3.17 8.05 -2.91 -0.02 3.15 16 33 H 0.17 2.46 8.06 -2.91 -0.02 2.44 16 34 H 0.43 1.35 9.06 -74.06 -0.67 0.67 16 35 H 0.15 3.13 5.59 -2.91 -0.02 3.11 16 36 H 0.08 2.36 8.14 -2.38 -0.02 2.34 16 37 H 0.10 2.47 8.14 -2.39 -0.02 2.45 16 38 H 0.08 4.10 5.87 -2.38 -0.01 4.08 16 39 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 40 H 0.25 13.64 8.31 -92.71 -0.77 12.87 16 41 H 0.03 1.17 7.79 -2.39 -0.02 1.15 16 42 H 0.03 1.09 8.06 -2.39 -0.02 1.07 16 Total: -1.00 -68.66 347.35 3.77 -64.89 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: 0.42 Total: 9.29 kcal Atomic # 6 Polarization: -0.59 SS G_CDS: 4.76 Total: 4.17 kcal Atomic # 7 Polarization: -82.42 SS G_CDS: -2.13 Total: -84.55 kcal Atomic # 8 Polarization: -38.18 SS G_CDS: -1.30 Total: -39.48 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Total: -68.66 3.77 -64.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226484423.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.292 kcal (2) G-P(sol) polarization free energy of solvation -68.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.82 seconds