Wall clock time and date at job start Tue Mar 31 2020 16:18:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35860 * 120.58680 * 2 1 4 4 C 1.40896 * 119.87475 * 179.97438 * 3 2 1 5 5 O 1.21816 * 119.48615 * 180.02562 * 4 3 2 6 6 O 1.34417 * 121.03597 * 0.02562 * 4 3 2 7 7 C 1.35152 * 120.90891 * 359.95586 * 6 4 3 8 8 C 1.38577 * 120.48180 * 180.02562 * 7 6 4 9 9 C 1.38623 * 120.09992 * 180.02562 * 8 7 6 10 10 O 1.35747 * 119.71147 * 180.02562 * 9 8 7 11 11 C 1.39141 * 120.58688 * 0.02562 * 9 8 7 12 12 C 1.38054 * 120.23764 * 359.97438 * 11 9 8 13 13 O 1.35702 * 120.19699 * 179.97438 * 12 11 9 14 14 C 1.42906 * 116.99736 * 5.74188 * 13 12 11 15 15 C 1.53933 * 113.73203 * 253.49724 * 14 13 12 16 16 N 1.47963 * 86.17788 * 221.92366 * 15 14 13 17 17 C 1.46901 * 111.00313 * 137.58493 * 16 15 14 18 18 C 1.50702 * 109.47293 * 70.63659 * 17 16 15 19 19 H 1.07999 * 119.99920 * 0.02562 * 18 17 16 20 20 C 1.37871 * 119.99781 * 180.02562 * 18 17 16 21 21 N 1.31519 * 119.99630 * 179.97438 * 20 18 17 22 22 Si 1.86793 * 120.00318 * 359.97438 * 20 18 17 23 23 H 1.48498 * 109.47103 * 90.00112 * 22 20 18 24 24 H 1.48497 * 109.47449 * 210.00333 * 22 20 18 25 25 H 1.48506 * 109.47197 * 330.00286 * 22 20 18 26 26 C 1.47956 * 90.76539 * 24.68741 * 16 15 14 27 27 C 1.40651 * 119.61055 * 0.02562 * 12 11 9 28 28 H 1.08998 * 109.46880 * 262.69631 * 1 2 3 29 29 H 1.09002 * 109.47158 * 22.69233 * 1 2 3 30 30 H 1.08998 * 109.47093 * 142.69676 * 1 2 3 31 31 H 1.07997 * 120.05774 * 359.95563 * 3 2 1 32 32 H 1.08002 * 119.95127 * 0.02562 * 8 7 6 33 33 H 0.96700 * 113.99642 * 269.98597 * 10 9 8 34 34 H 1.07998 * 119.87707 * 179.72346 * 11 9 8 35 35 H 1.08999 * 112.93641 * 25.19810 * 14 13 12 36 36 H 1.09006 * 113.75686 * 336.23387 * 15 14 13 37 37 H 1.08993 * 113.76072 * 107.60095 * 15 14 13 38 38 H 1.09000 * 109.46912 * 190.64026 * 17 16 15 39 39 H 1.08998 * 109.46530 * 310.63584 * 17 16 15 40 40 H 0.96998 * 119.99687 * 179.97438 * 21 20 18 41 41 H 1.09002 * 113.76577 * 220.99822 * 26 16 15 42 42 H 1.09001 * 113.75979 * 89.63252 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1696 0.0000 4 6 3.6071 1.1521 0.0005 5 8 4.2198 2.2049 0.0010 6 8 4.2858 -0.0082 0.0006 7 6 3.6354 -1.1929 0.0009 8 6 4.3439 -2.3839 0.0015 9 6 3.6687 -3.5945 0.0013 10 8 4.3707 -4.7564 0.0024 11 6 2.2777 -3.6294 0.0001 12 6 1.5528 -2.4545 -0.0005 13 8 0.1962 -2.4896 -0.0022 14 6 -0.4197 -3.7729 0.1240 15 6 -1.0428 -4.2924 -1.1842 16 7 -2.1791 -4.7404 -0.3491 17 6 -3.4612 -4.4459 -1.0028 18 6 -3.6390 -5.3541 -2.1921 19 1 -2.8761 -6.0780 -2.4376 20 6 -4.7757 -5.2609 -2.9668 21 7 -4.9306 -6.0532 -4.0051 22 14 -6.0956 -4.0093 -2.5419 23 1 -5.8118 -2.7325 -3.2451 24 1 -7.4218 -4.5246 -2.9673 25 1 -6.1025 -3.7758 -1.0753 26 6 -1.8573 -3.7188 0.6717 27 6 2.2285 -1.2210 -0.0003 28 1 -0.3633 -0.1306 1.0193 29 1 -0.3633 0.9481 -0.3965 30 1 -0.3633 -0.8174 -0.6228 31 1 1.6688 2.1109 -0.0007 32 1 5.4238 -2.3688 0.0020 33 1 4.5747 -5.0934 -0.8807 34 1 1.7634 -4.5791 -0.0045 35 1 0.2151 -4.5009 0.6290 36 1 -1.3014 -3.5037 -1.8909 37 1 -0.4852 -5.1093 -1.6420 38 1 -4.2751 -4.6088 -0.2962 39 1 -3.4700 -3.4075 -1.3340 40 1 -5.7305 -5.9878 -4.5499 41 1 -1.9505 -4.0776 1.6968 42 1 -2.3541 -2.7626 0.5079 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226486005.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:18:29 Heat of formation + Delta-G solvation = -58.134026 kcal Electronic energy + Delta-G solvation = -28040.272025 eV Core-core repulsion = 23953.627616 eV Total energy + Delta-G solvation = -4086.644409 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 2.57 seconds Orbital eigenvalues (eV) -42.33925 -40.75175 -39.48583 -38.26876 -37.90672 -36.20739 -35.13679 -32.92436 -30.53331 -30.18165 -29.31671 -28.94427 -26.14741 -25.68031 -24.65174 -23.54087 -22.46486 -21.59918 -20.28818 -19.66929 -18.83248 -18.15234 -17.54712 -17.32169 -17.06292 -16.96087 -16.08564 -15.74082 -15.58538 -15.15857 -14.99090 -14.67883 -14.31563 -13.98353 -13.89502 -13.69151 -13.44064 -13.24927 -13.02272 -12.81168 -12.57274 -12.49554 -12.24937 -12.21792 -11.75207 -11.44211 -11.29267 -11.05330 -10.86903 -10.51863 -10.47057 -10.39544 -10.10670 -9.94411 -9.46046 -8.84347 -8.75725 -8.40228 -8.28379 -6.20436 -4.20316 -0.14746 0.65421 1.20991 2.04364 2.47610 2.68361 3.16633 3.23729 3.25594 3.25864 3.65060 3.96647 4.03504 4.24173 4.26481 4.28701 4.42580 4.45770 4.62608 4.74624 4.84608 5.08593 5.11596 5.13162 5.31164 5.35300 5.41827 5.46864 5.57019 5.62926 5.73832 5.79448 5.81130 5.90190 6.00147 6.04457 6.16802 6.21178 6.55582 6.87632 6.94028 7.05740 7.12230 7.25318 7.49918 7.57734 8.41339 8.85804 9.39666 10.92466 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.015440 B = 0.003028 C = 0.002682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1813.063764 B = 9244.852520 C =10439.348810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.064 3.936 3 C -0.289 4.289 4 C 0.512 3.488 5 O -0.473 6.473 6 O -0.269 6.269 7 C 0.205 3.795 8 C -0.212 4.212 9 C 0.215 3.785 10 O -0.490 6.490 11 C -0.265 4.265 12 C 0.225 3.775 13 O -0.281 6.281 14 C 0.029 3.971 15 C 0.011 3.989 16 N -0.461 5.461 17 C 0.132 3.868 18 C -0.518 4.518 19 H 0.079 0.921 20 C 0.071 3.929 21 N -0.896 5.896 22 Si 0.876 3.124 23 H -0.276 1.276 24 H -0.284 1.284 25 H -0.266 1.266 26 C 0.006 3.994 27 C -0.202 4.202 28 H 0.090 0.910 29 H 0.076 0.924 30 H 0.105 0.895 31 H 0.160 0.840 32 H 0.150 0.850 33 H 0.404 0.596 34 H 0.154 0.846 35 H 0.112 0.888 36 H 0.081 0.919 37 H 0.090 0.910 38 H 0.035 0.965 39 H -0.005 1.005 40 H 0.266 0.734 41 H 0.093 0.907 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.206 7.935 8.850 19.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.063 3.937 3 C -0.309 4.309 4 C 0.363 3.637 5 O -0.363 6.363 6 O -0.180 6.180 7 C 0.159 3.841 8 C -0.231 4.231 9 C 0.170 3.830 10 O -0.302 6.302 11 C -0.284 4.284 12 C 0.177 3.823 13 O -0.192 6.192 14 C -0.026 4.026 15 C -0.118 4.118 16 N -0.185 5.185 17 C 0.005 3.995 18 C -0.556 4.556 19 H 0.098 0.902 20 C -0.131 4.131 21 N -0.534 5.534 22 Si 0.703 3.297 23 H -0.202 1.202 24 H -0.210 1.210 25 H -0.191 1.191 26 C -0.123 4.123 27 C -0.203 4.203 28 H 0.109 0.891 29 H 0.095 0.905 30 H 0.123 0.877 31 H 0.178 0.822 32 H 0.168 0.832 33 H 0.264 0.736 34 H 0.171 0.829 35 H 0.129 0.871 36 H 0.099 0.901 37 H 0.109 0.891 38 H 0.053 0.947 39 H 0.013 0.987 40 H 0.076 0.924 41 H 0.112 0.888 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 15.289 7.923 9.455 19.645 hybrid contribution -0.881 1.148 -0.700 1.608 sum 14.408 9.072 8.755 19.145 Atomic orbital electron populations 1.21282 0.88512 1.04442 1.04579 1.20417 0.97690 0.90696 0.84855 1.22200 0.92611 1.00339 1.15710 1.19225 0.88260 0.80943 0.75257 1.90977 1.72067 1.25427 1.47781 1.83734 1.42920 1.13841 1.77524 1.18398 0.88522 0.83718 0.93480 1.20506 1.01652 0.88417 1.12512 1.17841 0.88592 0.84859 0.91717 1.84732 1.74625 1.36547 1.34338 1.21555 0.94162 0.99069 1.13636 1.18524 0.83719 0.91527 0.88513 1.86428 1.14916 1.33126 1.84733 1.25294 0.94019 0.83044 1.00258 1.24265 0.93395 0.99695 0.94403 1.68556 1.03917 1.38704 1.07349 1.20693 0.87838 0.95359 0.95564 1.20903 1.06152 1.19694 1.08836 0.90246 1.24908 0.97869 0.95683 0.94690 1.69885 1.28207 1.38302 1.17006 0.86853 0.81756 0.81849 0.79268 1.20196 1.20951 1.19110 1.24250 0.91322 0.97074 0.99685 1.17407 0.91750 0.92793 1.18384 0.89150 0.90530 0.87721 0.82197 0.83216 0.73648 0.82890 0.87086 0.90057 0.89146 0.94711 0.98747 0.92450 0.88829 0.90589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.18 8.78 36.00 0.32 -0.87 16 2 C 0.06 0.67 5.92 -104.11 -0.62 0.05 16 3 C -0.29 -3.16 9.58 -39.43 -0.38 -3.53 16 4 C 0.51 6.85 7.91 31.74 0.25 7.10 16 5 O -0.47 -7.66 17.92 -19.58 -0.35 -8.01 16 6 O -0.27 -3.41 9.86 -21.66 -0.21 -3.62 16 7 C 0.20 2.27 6.74 -38.52 -0.26 2.01 16 8 C -0.21 -1.97 9.91 -39.31 -0.39 -2.36 16 9 C 0.22 1.90 6.69 -39.10 -0.26 1.64 16 10 O -0.49 -3.56 13.48 -18.95 -0.26 -3.82 16 11 C -0.27 -2.53 8.94 -39.31 -0.35 -2.88 16 12 C 0.23 2.39 6.66 -38.74 -0.26 2.14 16 13 O -0.28 -3.11 6.15 -18.81 -0.12 -3.23 16 14 C 0.03 0.35 3.87 -25.80 -0.10 0.25 16 15 C 0.01 0.18 7.30 -2.77 -0.02 0.16 16 16 N -0.46 -8.38 6.25 -239.99 -1.50 -9.88 16 17 C 0.13 2.92 3.65 -4.97 -0.02 2.90 16 18 C -0.52 -13.82 9.40 -34.44 -0.32 -14.15 16 19 H 0.08 2.32 8.05 -52.49 -0.42 1.90 16 20 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 21 N -0.90 -26.32 13.96 55.43 0.77 -25.55 16 22 Si 0.88 20.31 27.47 -169.99 -4.67 15.64 16 23 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 24 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 25 H -0.27 -5.89 6.54 56.52 0.37 -5.52 16 26 C 0.01 0.08 7.81 -2.77 -0.02 0.05 16 27 C -0.20 -2.22 5.75 -106.68 -0.61 -2.83 16 28 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.08 0.57 8.04 -51.93 -0.42 0.16 16 30 H 0.10 1.07 5.62 -51.93 -0.29 0.77 16 31 H 0.16 1.47 8.05 -52.49 -0.42 1.04 16 32 H 0.15 1.17 8.06 -52.49 -0.42 0.75 16 33 H 0.40 1.00 9.06 45.56 0.41 1.41 16 34 H 0.15 1.35 5.90 -52.49 -0.31 1.04 16 35 H 0.11 1.16 5.96 -51.93 -0.31 0.85 16 36 H 0.08 1.35 7.78 -51.93 -0.40 0.95 16 37 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 38 H 0.03 0.79 7.20 -51.93 -0.37 0.41 16 39 H -0.01 -0.11 7.12 -51.93 -0.37 -0.48 16 40 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 41 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 42 H 0.08 1.01 7.79 -51.93 -0.40 0.61 16 LS Contribution 351.57 15.07 5.30 5.30 Total: -1.00 -32.54 351.57 -8.35 -40.89 By element: Atomic # 1 Polarization: 4.92 SS G_CDS: -4.17 Total: 0.75 kcal Atomic # 6 Polarization: -5.33 SS G_CDS: -3.14 Total: -8.47 kcal Atomic # 7 Polarization: -34.70 SS G_CDS: -0.73 Total: -35.43 kcal Atomic # 8 Polarization: -17.74 SS G_CDS: -0.94 Total: -18.67 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -4.67 Total: 15.64 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.54 -8.35 -40.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226486005.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.248 kcal (2) G-P(sol) polarization free energy of solvation -32.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.57 seconds