Wall clock time and date at job start Tue Mar 31 2020 16:18:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35860 * 120.58680 * 2 1 4 4 C 1.40896 * 119.87475 * 179.97438 * 3 2 1 5 5 O 1.21816 * 119.48615 * 180.02562 * 4 3 2 6 6 O 1.34417 * 121.03597 * 0.02562 * 4 3 2 7 7 C 1.35152 * 120.90891 * 359.95586 * 6 4 3 8 8 C 1.38577 * 120.48180 * 180.02562 * 7 6 4 9 9 C 1.38623 * 120.09992 * 180.02562 * 8 7 6 10 10 O 1.35747 * 119.71147 * 180.02562 * 9 8 7 11 11 C 1.39141 * 120.58688 * 0.02562 * 9 8 7 12 12 C 1.38054 * 120.23764 * 359.97438 * 11 9 8 13 13 O 1.35702 * 120.19699 * 179.97438 * 12 11 9 14 14 C 1.42906 * 116.99736 * 5.74188 * 13 12 11 15 15 C 1.53933 * 113.73203 * 253.49724 * 14 13 12 16 16 N 1.47963 * 86.17788 * 221.92366 * 15 14 13 17 17 C 1.46901 * 111.00313 * 137.58493 * 16 15 14 18 18 C 1.50702 * 109.47293 * 70.63659 * 17 16 15 19 19 H 1.07999 * 119.99920 * 0.02562 * 18 17 16 20 20 C 1.37871 * 119.99781 * 180.02562 * 18 17 16 21 21 N 1.31519 * 119.99630 * 179.97438 * 20 18 17 22 22 Si 1.86793 * 120.00318 * 359.97438 * 20 18 17 23 23 H 1.48498 * 109.47103 * 90.00112 * 22 20 18 24 24 H 1.48497 * 109.47449 * 210.00333 * 22 20 18 25 25 H 1.48506 * 109.47197 * 330.00286 * 22 20 18 26 26 C 1.47956 * 90.76539 * 24.68741 * 16 15 14 27 27 C 1.40651 * 119.61055 * 0.02562 * 12 11 9 28 28 H 1.08998 * 109.46880 * 262.69631 * 1 2 3 29 29 H 1.09002 * 109.47158 * 22.69233 * 1 2 3 30 30 H 1.08998 * 109.47093 * 142.69676 * 1 2 3 31 31 H 1.07997 * 120.05774 * 359.95563 * 3 2 1 32 32 H 1.08002 * 119.95127 * 0.02562 * 8 7 6 33 33 H 0.96700 * 113.99642 * 269.98597 * 10 9 8 34 34 H 1.07998 * 119.87707 * 179.72346 * 11 9 8 35 35 H 1.08999 * 112.93641 * 25.19810 * 14 13 12 36 36 H 1.09006 * 113.75686 * 336.23387 * 15 14 13 37 37 H 1.08993 * 113.76072 * 107.60095 * 15 14 13 38 38 H 1.09000 * 109.46912 * 190.64026 * 17 16 15 39 39 H 1.08998 * 109.46530 * 310.63584 * 17 16 15 40 40 H 0.96998 * 119.99687 * 179.97438 * 21 20 18 41 41 H 1.09002 * 113.76577 * 220.99822 * 26 16 15 42 42 H 1.09001 * 113.75979 * 89.63252 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1696 0.0000 4 6 3.6071 1.1521 0.0005 5 8 4.2198 2.2049 0.0010 6 8 4.2858 -0.0082 0.0006 7 6 3.6354 -1.1929 0.0009 8 6 4.3439 -2.3839 0.0015 9 6 3.6687 -3.5945 0.0013 10 8 4.3707 -4.7564 0.0024 11 6 2.2777 -3.6294 0.0001 12 6 1.5528 -2.4545 -0.0005 13 8 0.1962 -2.4896 -0.0022 14 6 -0.4197 -3.7729 0.1240 15 6 -1.0428 -4.2924 -1.1842 16 7 -2.1791 -4.7404 -0.3491 17 6 -3.4612 -4.4459 -1.0028 18 6 -3.6390 -5.3541 -2.1921 19 1 -2.8761 -6.0780 -2.4376 20 6 -4.7757 -5.2609 -2.9668 21 7 -4.9306 -6.0532 -4.0051 22 14 -6.0956 -4.0093 -2.5419 23 1 -5.8118 -2.7325 -3.2451 24 1 -7.4218 -4.5246 -2.9673 25 1 -6.1025 -3.7758 -1.0753 26 6 -1.8573 -3.7188 0.6717 27 6 2.2285 -1.2210 -0.0003 28 1 -0.3633 -0.1306 1.0193 29 1 -0.3633 0.9481 -0.3965 30 1 -0.3633 -0.8174 -0.6228 31 1 1.6688 2.1109 -0.0007 32 1 5.4238 -2.3688 0.0020 33 1 4.5747 -5.0934 -0.8807 34 1 1.7634 -4.5791 -0.0045 35 1 0.2151 -4.5009 0.6290 36 1 -1.3014 -3.5037 -1.8909 37 1 -0.4852 -5.1093 -1.6420 38 1 -4.2751 -4.6088 -0.2962 39 1 -3.4700 -3.4075 -1.3340 40 1 -5.7305 -5.9878 -4.5499 41 1 -1.9505 -4.0776 1.6968 42 1 -2.3541 -2.7626 0.5079 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226486005.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:18:23 Heat of formation + Delta-G solvation = -81.880451 kcal Electronic energy + Delta-G solvation = -28041.301747 eV Core-core repulsion = 23953.627616 eV Total energy + Delta-G solvation = -4087.674131 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 2.93 seconds Orbital eigenvalues (eV) -43.22691 -41.73649 -40.43171 -39.14453 -38.92751 -37.10582 -35.90464 -34.91502 -31.82562 -31.21094 -30.30678 -29.71679 -27.52045 -26.95817 -25.58974 -24.44644 -23.55877 -22.78287 -21.45917 -20.56758 -19.70074 -19.03149 -18.99205 -18.34731 -18.22813 -17.97389 -17.04434 -16.80605 -16.59264 -16.28511 -16.03903 -15.79163 -15.52386 -15.06956 -14.89904 -14.63890 -14.44335 -14.32354 -14.15708 -14.05695 -13.85140 -13.62694 -13.51919 -13.15073 -12.89207 -12.65054 -12.57345 -12.13048 -11.95859 -11.81032 -11.55978 -11.51982 -11.47454 -11.31603 -11.15908 -10.81648 -9.71152 -9.66459 -9.22077 -8.30487 -6.35351 -0.95973 -0.17569 0.39053 1.15463 1.35176 1.37674 1.47590 1.61761 1.76873 2.33356 2.42023 2.94605 3.03193 3.12028 3.14656 3.25407 3.33871 3.45217 3.62824 3.80668 3.94994 3.98779 4.21217 4.36691 4.38677 4.47188 4.53235 4.64124 4.65062 4.71971 4.78172 4.81017 4.81503 4.85392 4.95293 5.06532 5.12042 5.16350 5.39702 5.41856 5.70059 5.92831 5.96404 6.07374 6.29020 6.45702 6.68318 6.71441 7.29020 8.85992 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.015440 B = 0.003028 C = 0.002682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1813.063764 B = 9244.852520 C =10439.348810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.074 3.926 3 C -0.298 4.298 4 C 0.508 3.492 5 O -0.515 6.515 6 O -0.278 6.278 7 C 0.189 3.811 8 C -0.208 4.208 9 C 0.229 3.771 10 O -0.493 6.493 11 C -0.264 4.264 12 C 0.219 3.781 13 O -0.278 6.278 14 C 0.057 3.943 15 C 0.002 3.998 16 N -0.486 5.486 17 C 0.142 3.858 18 C -0.521 4.521 19 H 0.036 0.964 20 C 0.008 3.992 21 N -0.947 5.947 22 Si 0.946 3.054 23 H -0.266 1.266 24 H -0.285 1.285 25 H -0.245 1.245 26 C 0.008 3.992 27 C -0.212 4.212 28 H 0.103 0.897 29 H 0.092 0.908 30 H 0.095 0.905 31 H 0.176 0.824 32 H 0.164 0.836 33 H 0.427 0.573 34 H 0.163 0.837 35 H 0.133 0.867 36 H 0.067 0.933 37 H 0.085 0.915 38 H 0.033 0.967 39 H 0.003 0.997 40 H 0.267 0.733 41 H 0.117 0.883 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.060 8.528 10.572 20.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.073 3.927 3 C -0.317 4.317 4 C 0.362 3.638 5 O -0.408 6.408 6 O -0.190 6.190 7 C 0.144 3.856 8 C -0.227 4.227 9 C 0.183 3.817 10 O -0.309 6.309 11 C -0.283 4.283 12 C 0.171 3.829 13 O -0.189 6.189 14 C 0.002 3.998 15 C -0.127 4.127 16 N -0.210 5.210 17 C 0.014 3.986 18 C -0.559 4.559 19 H 0.055 0.945 20 C -0.189 4.189 21 N -0.588 5.588 22 Si 0.770 3.230 23 H -0.191 1.191 24 H -0.211 1.211 25 H -0.168 1.168 26 C -0.120 4.120 27 C -0.214 4.214 28 H 0.121 0.879 29 H 0.111 0.889 30 H 0.113 0.887 31 H 0.193 0.807 32 H 0.182 0.818 33 H 0.290 0.710 34 H 0.181 0.819 35 H 0.151 0.849 36 H 0.085 0.915 37 H 0.103 0.897 38 H 0.051 0.949 39 H 0.021 0.979 40 H 0.076 0.924 41 H 0.135 0.865 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 15.169 8.492 11.183 20.671 hybrid contribution -0.681 0.763 -1.264 1.625 sum 14.488 9.255 9.920 19.848 Atomic orbital electron populations 1.21326 0.87162 1.04933 1.05170 1.20616 0.98532 0.90246 0.83301 1.22217 0.91332 1.01347 1.16763 1.19564 0.89037 0.80618 0.74595 1.90945 1.72881 1.26774 1.50197 1.83678 1.43516 1.14290 1.77496 1.18636 0.88894 0.83541 0.94519 1.20715 1.02445 0.87987 1.11589 1.17782 0.88394 0.85167 0.90323 1.84690 1.74240 1.35676 1.36337 1.21702 0.94553 0.99039 1.12966 1.18528 0.83458 0.91742 0.89165 1.86439 1.15284 1.32248 1.84957 1.24910 0.93945 0.83733 0.97253 1.24272 0.93215 0.99375 0.95812 1.68429 1.02682 1.41135 1.08788 1.20448 0.90113 0.94297 0.93750 1.21194 1.04930 1.19319 1.10493 0.94526 1.25875 1.00649 0.97952 0.94467 1.70050 1.29264 1.40790 1.18683 0.85725 0.78017 0.79050 0.80251 1.19111 1.21084 1.16802 1.24340 0.91955 0.96212 0.99506 1.17527 0.91851 0.93247 1.18762 0.87886 0.88941 0.88662 0.80704 0.81841 0.71006 0.81941 0.84936 0.91496 0.89662 0.94854 0.97931 0.92420 0.86525 0.89855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.00 8.78 71.23 0.63 -1.38 16 2 C 0.07 1.42 5.92 -19.53 -0.12 1.30 16 3 C -0.30 -6.24 9.58 22.37 0.21 -6.03 16 4 C 0.51 13.67 7.91 68.47 0.54 14.22 16 5 O -0.52 -17.14 17.92 18.87 0.34 -16.80 16 6 O -0.28 -7.01 9.86 11.43 0.11 -6.90 16 7 C 0.19 3.97 6.74 22.95 0.15 4.13 16 8 C -0.21 -3.47 9.91 22.44 0.22 -3.25 16 9 C 0.23 3.42 6.69 22.58 0.15 3.57 16 10 O -0.49 -5.62 13.48 -90.72 -1.22 -6.84 16 11 C -0.26 -4.30 8.94 22.44 0.20 -4.10 16 12 C 0.22 4.12 6.66 22.82 0.15 4.27 16 13 O -0.28 -5.41 6.15 -90.22 -0.56 -5.96 16 14 C 0.06 1.21 3.87 31.24 0.12 1.33 16 15 C 0.00 0.07 7.30 86.40 0.63 0.70 16 16 N -0.49 -16.97 6.25 -916.42 -5.73 -22.70 16 17 C 0.14 6.08 3.65 85.56 0.31 6.40 16 18 C -0.52 -28.31 9.40 25.60 0.24 -28.07 16 19 H 0.04 2.23 8.05 -2.91 -0.02 2.21 16 20 C 0.01 0.46 5.47 84.65 0.46 0.92 16 21 N -0.95 -57.21 13.96 21.45 0.30 -56.91 16 22 Si 0.95 41.41 27.47 68.60 1.88 43.29 16 23 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 24 H -0.29 -12.44 7.11 99.48 0.71 -11.74 16 25 H -0.24 -9.76 6.54 99.48 0.65 -9.11 16 26 C 0.01 0.20 7.81 86.41 0.67 0.87 16 27 C -0.21 -4.31 5.75 -21.20 -0.12 -4.44 16 28 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.09 1.14 8.04 -2.39 -0.02 1.12 16 30 H 0.10 1.71 5.62 -2.39 -0.01 1.69 16 31 H 0.18 3.01 8.05 -2.91 -0.02 2.99 16 32 H 0.16 2.22 8.06 -2.91 -0.02 2.19 16 33 H 0.43 0.73 9.06 -74.06 -0.67 0.06 16 34 H 0.16 2.34 5.90 -2.91 -0.02 2.32 16 35 H 0.13 2.28 5.96 -2.39 -0.01 2.26 16 36 H 0.07 2.20 7.78 -2.38 -0.02 2.18 16 37 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 38 H 0.03 1.44 7.20 -2.39 -0.02 1.42 16 39 H 0.00 0.12 7.12 -2.39 -0.02 0.11 16 40 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 41 H 0.12 2.31 8.14 -2.39 -0.02 2.29 16 42 H 0.08 1.92 7.79 -2.39 -0.02 1.91 16 Total: -1.00 -72.66 351.57 -0.05 -72.71 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: 0.36 Total: 9.67 kcal Atomic # 6 Polarization: -14.01 SS G_CDS: 4.47 Total: -9.55 kcal Atomic # 7 Polarization: -74.19 SS G_CDS: -5.43 Total: -79.62 kcal Atomic # 8 Polarization: -35.18 SS G_CDS: -1.33 Total: -36.50 kcal Atomic # 14 Polarization: 41.41 SS G_CDS: 1.88 Total: 43.29 kcal Total: -72.66 -0.05 -72.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226486005.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.167 kcal (2) G-P(sol) polarization free energy of solvation -72.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.93 seconds