Wall clock time and date at job start Tue Mar 31 2020 16:19:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35865 * 120.89978 * 2 1 4 4 C 1.40973 * 119.81064 * 180.02562 * 3 2 1 5 5 O 1.21805 * 119.15468 * 179.97438 * 4 3 2 6 6 O 1.34186 * 121.68918 * 359.97438 * 4 3 2 7 7 C 1.35101 * 121.48955 * 0.02562 * 6 4 3 8 8 C 1.38745 * 120.61737 * 179.97438 * 7 6 4 9 9 C 1.38338 * 120.00687 * 179.81008 * 8 7 6 10 10 O 1.35810 * 119.74914 * 180.25453 * 9 8 7 11 11 C 1.39822 * 120.50637 * 0.48068 * 9 8 7 12 12 O 1.36018 * 119.90613 * 179.78211 * 11 9 8 13 13 C 1.42897 * 117.00350 * 174.02756 * 12 11 9 14 14 H 1.08998 * 110.88884 * 326.97100 * 13 12 11 15 15 C 1.55153 * 111.00785 * 203.08875 * 13 12 11 16 16 C 1.54325 * 102.94479 * 206.38815 * 15 13 12 17 17 N 1.47028 * 107.26946 * 22.19474 * 16 15 13 18 18 C 1.36937 * 125.64585 * 181.02724 * 17 16 15 19 19 H 1.08002 * 119.99485 * 186.09393 * 18 17 16 20 20 C 1.38807 * 120.00428 * 6.09223 * 18 17 16 21 21 N 1.31624 * 119.99838 * 7.12179 * 20 18 17 22 22 Si 1.86797 * 120.00245 * 187.39864 * 20 18 17 23 23 H 1.48504 * 109.46889 * 264.74454 * 22 20 18 24 24 H 1.48494 * 109.47016 * 24.74175 * 22 20 18 25 25 H 1.48497 * 109.47225 * 144.74264 * 22 20 18 26 26 C 1.47428 * 108.70299 * 1.28552 * 17 16 15 27 27 C 1.37797 * 120.19042 * 359.49462 * 11 9 8 28 28 C 1.40042 * 119.64055 * 0.26730 * 27 11 9 29 29 H 1.09004 * 109.47093 * 270.00028 * 1 2 3 30 30 H 1.08999 * 109.47495 * 29.99144 * 1 2 3 31 31 H 1.08992 * 109.47511 * 149.99987 * 1 2 3 32 32 H 1.08000 * 120.09203 * 0.02562 * 3 2 1 33 33 H 1.08007 * 119.99418 * 0.05324 * 8 7 6 34 34 H 0.96694 * 114.00558 * 270.22319 * 10 9 8 35 35 H 1.08996 * 110.72630 * 88.02420 * 15 13 12 36 36 H 1.09002 * 110.86886 * 324.82111 * 15 13 12 37 37 H 1.08999 * 109.88583 * 262.77482 * 16 15 13 38 38 H 1.09004 * 109.88648 * 141.60564 * 16 15 13 39 39 H 0.96999 * 120.00442 * 180.27364 * 21 20 18 40 40 H 1.08993 * 110.36326 * 94.48595 * 26 17 16 41 41 H 1.09000 * 110.36345 * 216.81271 * 26 17 16 42 42 H 1.08003 * 120.17861 * 180.27882 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2047 1.1658 0.0000 4 6 3.6142 1.1390 -0.0005 5 8 4.2277 2.1913 -0.0010 6 8 4.2972 -0.0160 -0.0006 7 6 3.6648 -1.2098 -0.0006 8 6 4.3892 -2.3932 -0.0011 9 6 3.7287 -3.6087 0.0028 10 8 4.4429 -4.7638 0.0075 11 6 2.3313 -3.6572 -0.0027 12 8 1.6944 -4.8590 -0.0032 13 6 0.2712 -4.8392 0.1236 14 1 -0.0517 -4.0071 0.7493 15 6 -0.2567 -6.1890 0.6773 16 6 -1.6945 -6.2525 0.1202 17 7 -1.7468 -5.3701 -1.0547 18 6 -2.8536 -5.1315 -1.8249 19 1 -2.7673 -4.5433 -2.7266 20 6 -4.0863 -5.6455 -1.4469 21 7 -4.2213 -6.2413 -0.2810 22 14 -5.5517 -5.4986 -2.5959 23 1 -6.3457 -4.2969 -2.2343 24 1 -5.0724 -5.3724 -3.9957 25 1 -6.4019 -6.7097 -2.4711 26 6 -0.4087 -4.7898 -1.2700 27 6 1.5975 -2.4908 -0.0016 28 6 2.2588 -1.2564 -0.0007 29 1 -0.3633 0.0000 1.0277 30 1 -0.3634 0.8900 -0.5137 31 1 -0.3634 -0.8899 -0.5138 32 1 1.6810 2.1103 0.0004 33 1 5.4689 -2.3653 -0.0007 34 1 4.6533 -5.0998 -0.8744 35 1 -0.2655 -6.1818 1.7672 36 1 0.3389 -7.0217 0.3033 37 1 -2.4003 -5.9065 0.8753 38 1 -1.9337 -7.2747 -0.1731 39 1 -5.0817 -6.6041 -0.0184 40 1 0.1520 -5.3861 -1.9896 41 1 -0.4932 -3.7590 -1.6140 42 1 0.5181 -2.5285 -0.0014 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226532020.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:19:12 Heat of formation + Delta-G solvation = -75.837176 kcal Electronic energy + Delta-G solvation = -28209.653796 eV Core-core repulsion = 24122.241721 eV Total energy + Delta-G solvation = -4087.412075 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.09528 -40.38053 -38.57538 -37.89631 -36.88028 -36.32621 -34.85731 -32.43808 -30.56352 -29.64392 -29.06606 -28.90409 -27.53594 -24.83712 -24.26995 -23.59183 -22.27887 -20.68809 -20.29621 -20.01268 -19.03846 -17.90416 -17.57771 -17.03016 -16.92271 -16.69289 -15.79695 -15.52528 -15.17442 -14.84368 -14.49155 -14.40255 -14.05492 -13.93700 -13.83766 -13.64672 -13.32352 -13.22924 -12.85415 -12.51284 -12.35693 -12.25318 -12.00694 -11.84655 -11.52635 -11.06616 -11.04645 -10.89416 -10.51542 -10.46453 -10.44872 -10.23095 -10.10786 -9.98992 -9.83646 -8.91308 -8.77869 -8.10040 -7.02112 -5.85687 -3.24117 -0.12975 0.83058 1.19751 2.19028 2.55337 3.07592 3.30197 3.33150 3.37157 3.38681 3.74878 3.98522 4.00019 4.10236 4.36681 4.62979 4.65087 4.94092 5.02557 5.06925 5.14332 5.22677 5.29052 5.33425 5.37753 5.39527 5.45416 5.53584 5.55786 5.63547 5.86010 5.91805 5.98040 6.07942 6.21542 6.26975 6.39210 6.45427 6.98776 7.18154 7.29233 7.29627 7.46494 7.49216 7.65176 8.08526 9.03392 9.64038 10.27418 11.23370 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.014478 B = 0.003265 C = 0.002773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.460706 B = 8573.873477 C =10094.910996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.040 3.960 3 C -0.262 4.262 4 C 0.511 3.489 5 O -0.475 6.475 6 O -0.270 6.270 7 C 0.120 3.880 8 C -0.128 4.128 9 C 0.134 3.866 10 O -0.478 6.478 11 C 0.103 3.897 12 O -0.290 6.290 13 C 0.060 3.940 14 H 0.082 0.918 15 C -0.133 4.133 16 C 0.171 3.829 17 N -0.600 5.600 18 C -0.235 4.235 19 H 0.079 0.921 20 C -0.004 4.004 21 N -0.918 5.918 22 Si 0.913 3.087 23 H -0.288 1.288 24 H -0.280 1.280 25 H -0.289 1.289 26 C 0.120 3.880 27 C -0.140 4.140 28 C -0.121 4.121 29 H 0.094 0.906 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.163 0.837 33 H 0.155 0.845 34 H 0.396 0.604 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.036 0.964 39 H 0.254 0.746 40 H 0.032 0.968 41 H 0.042 0.958 42 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.096 7.380 1.632 15.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.039 3.961 3 C -0.281 4.281 4 C 0.361 3.639 5 O -0.364 6.364 6 O -0.182 6.182 7 C 0.076 3.924 8 C -0.147 4.147 9 C 0.088 3.912 10 O -0.288 6.288 11 C 0.055 3.945 12 O -0.202 6.202 13 C 0.003 3.997 14 H 0.100 0.900 15 C -0.172 4.172 16 C 0.046 3.954 17 N -0.328 5.328 18 C -0.363 4.363 19 H 0.097 0.903 20 C -0.201 4.201 21 N -0.564 5.564 22 Si 0.743 3.257 23 H -0.215 1.215 24 H -0.205 1.205 25 H -0.215 1.215 26 C -0.007 4.007 27 C -0.159 4.159 28 C -0.122 4.122 29 H 0.112 0.888 30 H 0.104 0.896 31 H 0.105 0.895 32 H 0.180 0.820 33 H 0.173 0.827 34 H 0.253 0.747 35 H 0.088 0.912 36 H 0.090 0.910 37 H 0.087 0.913 38 H 0.055 0.945 39 H 0.065 0.935 40 H 0.049 0.951 41 H 0.060 0.940 42 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 13.389 7.665 2.227 15.588 hybrid contribution -1.058 0.111 -1.046 1.491 sum 12.332 7.776 1.181 14.626 Atomic orbital electron populations 1.21083 0.88586 1.04975 1.04308 1.21609 0.97239 0.90761 0.86516 1.22392 0.92925 1.00344 1.12452 1.19128 0.88172 0.81193 0.75367 1.90974 1.72108 1.25733 1.47581 1.83513 1.43207 1.13568 1.77922 1.18565 0.89349 0.83297 1.01206 1.20430 1.01334 0.87783 1.05116 1.17497 0.86228 0.85857 1.01614 1.84823 1.73262 1.36887 1.33839 1.19364 0.91381 0.86076 0.97648 1.86219 1.22460 1.24892 1.86620 1.24077 0.75676 1.00549 0.99412 0.89994 1.23003 0.99301 0.94650 1.00215 1.21316 0.89318 0.94876 0.89867 1.44331 1.04399 1.51558 1.32468 1.19027 0.84981 1.29567 1.02711 0.90326 1.24829 0.97494 1.00690 0.97065 1.69925 1.23849 1.43022 1.19640 0.86094 0.82363 0.77262 0.79990 1.21494 1.20543 1.21501 1.21992 0.88198 0.97306 0.93171 1.21323 1.01419 0.89692 1.03442 1.18802 0.91448 0.93948 1.08004 0.88807 0.89592 0.89468 0.81993 0.82718 0.74667 0.91186 0.91044 0.91268 0.94531 0.93531 0.95065 0.93989 0.82607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.08 9.64 36.00 0.35 -0.73 16 2 C 0.04 0.40 6.08 -102.18 -0.62 -0.22 16 3 C -0.26 -2.77 9.62 -39.40 -0.38 -3.15 16 4 C 0.51 6.87 7.89 31.77 0.25 7.12 16 5 O -0.47 -7.68 17.91 -19.61 -0.35 -8.03 16 6 O -0.27 -3.55 9.82 -20.92 -0.21 -3.75 16 7 C 0.12 1.43 6.76 -38.47 -0.26 1.17 16 8 C -0.13 -1.34 9.92 -39.36 -0.39 -1.73 16 9 C 0.13 1.52 6.71 -38.95 -0.26 1.26 16 10 O -0.48 -4.91 13.25 -33.88 -0.45 -5.36 16 11 C 0.10 1.32 6.69 -39.15 -0.26 1.06 16 12 O -0.29 -4.30 9.72 -34.53 -0.34 -4.64 16 13 C 0.06 0.96 2.81 -24.46 -0.07 0.89 16 14 H 0.08 1.24 6.28 -51.93 -0.33 0.92 16 15 C -0.13 -2.31 6.68 -24.90 -0.17 -2.48 16 16 C 0.17 3.81 5.45 -3.06 -0.02 3.80 16 17 N -0.60 -14.13 3.39 -169.92 -0.58 -14.71 16 18 C -0.23 -6.11 10.26 -15.06 -0.15 -6.27 16 19 H 0.08 1.97 7.84 -52.49 -0.41 1.56 16 20 C 0.00 -0.10 5.45 -17.43 -0.10 -0.20 16 21 N -0.92 -25.35 10.46 55.49 0.58 -24.77 16 22 Si 0.91 20.90 29.56 -169.99 -5.02 15.87 16 23 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 24 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 25 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 26 C 0.12 2.26 6.84 -2.40 -0.02 2.24 16 27 C -0.14 -1.68 8.28 -39.07 -0.32 -2.00 16 28 C -0.12 -1.39 5.87 -105.01 -0.62 -2.01 16 29 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.09 0.56 8.10 -51.93 -0.42 0.14 16 31 H 0.09 0.76 6.61 -51.93 -0.34 0.42 16 32 H 0.16 1.38 8.06 -52.49 -0.42 0.96 16 33 H 0.16 1.31 8.06 -52.48 -0.42 0.89 16 34 H 0.40 2.26 9.06 45.56 0.41 2.67 16 35 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 37 H 0.07 1.71 6.87 -51.93 -0.36 1.35 16 38 H 0.04 0.90 7.98 -51.93 -0.41 0.48 16 39 H 0.25 6.84 8.31 -40.82 -0.34 6.50 16 40 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.04 0.74 7.75 -51.93 -0.40 0.34 16 42 H 0.16 1.83 4.05 -52.48 -0.21 1.62 16 LS Contribution 351.91 15.07 5.30 5.30 Total: -1.00 -31.72 351.91 -8.24 -39.96 By element: Atomic # 1 Polarization: 5.52 SS G_CDS: -4.15 Total: 1.38 kcal Atomic # 6 Polarization: 1.79 SS G_CDS: -3.03 Total: -1.25 kcal Atomic # 7 Polarization: -39.48 SS G_CDS: 0.00 Total: -39.48 kcal Atomic # 8 Polarization: -20.45 SS G_CDS: -1.34 Total: -21.79 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.72 -8.24 -39.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226532020.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.877 kcal (2) G-P(sol) polarization free energy of solvation -31.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds