Wall clock time and date at job start Tue Mar 31 2020 16:19:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35865 * 120.89978 * 2 1 4 4 C 1.40973 * 119.81064 * 180.02562 * 3 2 1 5 5 O 1.21805 * 119.15468 * 179.97438 * 4 3 2 6 6 O 1.34186 * 121.68918 * 359.97438 * 4 3 2 7 7 C 1.35101 * 121.48955 * 0.02562 * 6 4 3 8 8 C 1.38745 * 120.61737 * 179.97438 * 7 6 4 9 9 C 1.38338 * 120.00687 * 179.81008 * 8 7 6 10 10 O 1.35810 * 119.74914 * 180.25453 * 9 8 7 11 11 C 1.39822 * 120.50637 * 0.48068 * 9 8 7 12 12 O 1.36018 * 119.90613 * 179.78211 * 11 9 8 13 13 C 1.42897 * 117.00350 * 174.02756 * 12 11 9 14 14 H 1.08998 * 110.88884 * 326.97100 * 13 12 11 15 15 C 1.55153 * 111.00785 * 203.08875 * 13 12 11 16 16 C 1.54325 * 102.94479 * 206.38815 * 15 13 12 17 17 N 1.47028 * 107.26946 * 22.19474 * 16 15 13 18 18 C 1.36937 * 125.64585 * 181.02724 * 17 16 15 19 19 H 1.08002 * 119.99485 * 186.09393 * 18 17 16 20 20 C 1.38807 * 120.00428 * 6.09223 * 18 17 16 21 21 N 1.31624 * 119.99838 * 7.12179 * 20 18 17 22 22 Si 1.86797 * 120.00245 * 187.39864 * 20 18 17 23 23 H 1.48504 * 109.46889 * 264.74454 * 22 20 18 24 24 H 1.48494 * 109.47016 * 24.74175 * 22 20 18 25 25 H 1.48497 * 109.47225 * 144.74264 * 22 20 18 26 26 C 1.47428 * 108.70299 * 1.28552 * 17 16 15 27 27 C 1.37797 * 120.19042 * 359.49462 * 11 9 8 28 28 C 1.40042 * 119.64055 * 0.26730 * 27 11 9 29 29 H 1.09004 * 109.47093 * 270.00028 * 1 2 3 30 30 H 1.08999 * 109.47495 * 29.99144 * 1 2 3 31 31 H 1.08992 * 109.47511 * 149.99987 * 1 2 3 32 32 H 1.08000 * 120.09203 * 0.02562 * 3 2 1 33 33 H 1.08007 * 119.99418 * 0.05324 * 8 7 6 34 34 H 0.96694 * 114.00558 * 270.22319 * 10 9 8 35 35 H 1.08996 * 110.72630 * 88.02420 * 15 13 12 36 36 H 1.09002 * 110.86886 * 324.82111 * 15 13 12 37 37 H 1.08999 * 109.88583 * 262.77482 * 16 15 13 38 38 H 1.09004 * 109.88648 * 141.60564 * 16 15 13 39 39 H 0.96999 * 120.00442 * 180.27364 * 21 20 18 40 40 H 1.08993 * 110.36326 * 94.48595 * 26 17 16 41 41 H 1.09000 * 110.36345 * 216.81271 * 26 17 16 42 42 H 1.08003 * 120.17861 * 180.27882 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2047 1.1658 0.0000 4 6 3.6142 1.1390 -0.0005 5 8 4.2277 2.1913 -0.0010 6 8 4.2972 -0.0160 -0.0006 7 6 3.6648 -1.2098 -0.0006 8 6 4.3892 -2.3932 -0.0011 9 6 3.7287 -3.6087 0.0028 10 8 4.4429 -4.7638 0.0075 11 6 2.3313 -3.6572 -0.0027 12 8 1.6944 -4.8590 -0.0032 13 6 0.2712 -4.8392 0.1236 14 1 -0.0517 -4.0071 0.7493 15 6 -0.2567 -6.1890 0.6773 16 6 -1.6945 -6.2525 0.1202 17 7 -1.7468 -5.3701 -1.0547 18 6 -2.8536 -5.1315 -1.8249 19 1 -2.7673 -4.5433 -2.7266 20 6 -4.0863 -5.6455 -1.4469 21 7 -4.2213 -6.2413 -0.2810 22 14 -5.5517 -5.4986 -2.5959 23 1 -6.3457 -4.2969 -2.2343 24 1 -5.0724 -5.3724 -3.9957 25 1 -6.4019 -6.7097 -2.4711 26 6 -0.4087 -4.7898 -1.2700 27 6 1.5975 -2.4908 -0.0016 28 6 2.2588 -1.2564 -0.0007 29 1 -0.3633 0.0000 1.0277 30 1 -0.3634 0.8900 -0.5137 31 1 -0.3634 -0.8899 -0.5138 32 1 1.6810 2.1103 0.0004 33 1 5.4689 -2.3653 -0.0007 34 1 4.6533 -5.0998 -0.8744 35 1 -0.2655 -6.1818 1.7672 36 1 0.3389 -7.0217 0.3033 37 1 -2.4003 -5.9065 0.8753 38 1 -1.9337 -7.2747 -0.1731 39 1 -5.0817 -6.6041 -0.0184 40 1 0.1520 -5.3861 -1.9896 41 1 -0.4932 -3.7590 -1.6140 42 1 0.5181 -2.5285 -0.0014 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226532020.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:19:11 Heat of formation + Delta-G solvation = -94.747525 kcal Electronic energy + Delta-G solvation = -28210.473811 eV Core-core repulsion = 24122.241721 eV Total energy + Delta-G solvation = -4088.232089 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.05401 -41.42987 -39.74141 -38.91418 -37.99132 -37.54593 -35.75163 -34.25987 -31.56401 -31.16644 -30.11076 -29.75215 -29.01128 -26.56245 -25.22752 -24.67377 -23.20457 -22.17841 -21.75774 -20.97835 -20.05522 -19.10469 -18.68745 -18.40107 -17.93258 -17.75754 -16.77504 -16.74646 -16.54850 -16.28541 -15.80793 -15.44787 -15.27775 -15.03774 -14.68584 -14.53931 -14.37020 -14.30847 -14.17603 -13.86496 -13.79206 -13.44157 -13.19118 -12.89056 -12.74550 -12.71787 -12.50456 -12.17499 -12.03515 -11.89846 -11.82881 -11.58950 -11.54942 -11.43524 -10.95715 -10.73343 -9.79528 -9.09847 -8.92390 -7.84379 -5.24294 -0.99506 -0.12382 0.31994 1.23179 1.48779 1.50396 1.59027 1.61366 1.95145 2.43001 2.50975 2.89268 3.11167 3.19809 3.24464 3.32940 3.59822 3.61511 3.80373 3.84785 3.91563 4.03476 4.21466 4.26857 4.43614 4.47111 4.56882 4.61760 4.69024 4.69810 4.71294 4.81601 4.86069 4.96971 5.02665 5.09965 5.19173 5.22026 5.42665 5.57576 5.74971 6.01454 6.13589 6.22727 6.32770 6.73390 7.07130 7.73224 8.36177 9.23095 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.014478 B = 0.003265 C = 0.002773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.460706 B = 8573.873477 C =10094.910996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.052 3.948 3 C -0.266 4.266 4 C 0.507 3.493 5 O -0.513 6.513 6 O -0.279 6.279 7 C 0.112 3.888 8 C -0.120 4.120 9 C 0.145 3.855 10 O -0.485 6.485 11 C 0.082 3.918 12 O -0.294 6.294 13 C 0.079 3.921 14 H 0.095 0.905 15 C -0.122 4.122 16 C 0.178 3.822 17 N -0.620 5.620 18 C -0.244 4.244 19 H 0.084 0.916 20 C -0.059 4.059 21 N -0.946 5.946 22 Si 0.975 3.025 23 H -0.284 1.284 24 H -0.270 1.270 25 H -0.297 1.297 26 C 0.118 3.882 27 C -0.135 4.135 28 C -0.128 4.128 29 H 0.107 0.893 30 H 0.104 0.896 31 H 0.081 0.919 32 H 0.183 0.817 33 H 0.176 0.824 34 H 0.417 0.583 35 H 0.091 0.909 36 H 0.078 0.922 37 H 0.040 0.960 38 H 0.002 0.998 39 H 0.248 0.752 40 H 0.029 0.971 41 H 0.055 0.945 42 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.769 8.112 1.344 16.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.051 3.949 3 C -0.284 4.284 4 C 0.360 3.640 5 O -0.406 6.406 6 O -0.191 6.191 7 C 0.068 3.932 8 C -0.139 4.139 9 C 0.098 3.902 10 O -0.299 6.299 11 C 0.035 3.965 12 O -0.207 6.207 13 C 0.022 3.978 14 H 0.113 0.887 15 C -0.160 4.160 16 C 0.053 3.947 17 N -0.348 5.348 18 C -0.372 4.372 19 H 0.102 0.898 20 C -0.253 4.253 21 N -0.594 5.594 22 Si 0.803 3.197 23 H -0.211 1.211 24 H -0.195 1.195 25 H -0.224 1.224 26 C -0.007 4.007 27 C -0.153 4.153 28 C -0.129 4.129 29 H 0.125 0.875 30 H 0.123 0.877 31 H 0.100 0.900 32 H 0.200 0.800 33 H 0.193 0.807 34 H 0.278 0.722 35 H 0.110 0.890 36 H 0.096 0.904 37 H 0.059 0.941 38 H 0.020 0.980 39 H 0.058 0.942 40 H 0.047 0.953 41 H 0.073 0.927 42 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 14.103 8.394 1.910 16.522 hybrid contribution -1.144 -0.163 -0.989 1.521 sum 12.959 8.231 0.922 15.379 Atomic orbital electron populations 1.21186 0.86862 1.05645 1.05292 1.21794 0.98255 0.89877 0.84996 1.22443 0.91385 1.01520 1.13091 1.19539 0.89095 0.80738 0.74660 1.90950 1.72923 1.26941 1.49765 1.83465 1.43877 1.13993 1.77787 1.18806 0.89781 0.83181 1.01425 1.20600 1.02322 0.86934 1.04045 1.17471 0.85698 0.86402 1.00602 1.84775 1.72928 1.36446 1.35774 1.19584 0.92019 0.85615 0.99237 1.86189 1.21199 1.26008 1.87261 1.23686 0.76615 1.00069 0.97436 0.88711 1.22821 0.95985 0.95855 1.01362 1.21052 0.92031 0.92614 0.89020 1.44576 1.05570 1.52152 1.32469 1.19399 0.85944 1.28812 1.03083 0.89787 1.25598 1.00057 1.01127 0.98475 1.70126 1.23885 1.44252 1.21142 0.85127 0.79203 0.76719 0.78655 1.21061 1.19513 1.22353 1.22101 0.86203 0.97495 0.94950 1.21308 1.01460 0.89554 1.03023 1.18938 0.91522 0.94435 1.08042 0.87496 0.87713 0.90000 0.79958 0.80680 0.72249 0.88996 0.90368 0.94137 0.98023 0.94246 0.95323 0.92669 0.82387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.79 9.64 71.23 0.69 -1.10 16 2 C 0.05 0.93 6.08 -18.28 -0.11 0.82 16 3 C -0.27 -5.16 9.62 22.39 0.22 -4.95 16 4 C 0.51 13.24 7.89 68.49 0.54 13.78 16 5 O -0.51 -16.61 17.91 18.94 0.34 -16.28 16 6 O -0.28 -7.05 9.82 14.23 0.14 -6.91 16 7 C 0.11 2.46 6.76 22.99 0.16 2.62 16 8 C -0.12 -2.24 9.92 22.41 0.22 -2.02 16 9 C 0.14 2.91 6.71 22.68 0.15 3.07 16 10 O -0.49 -8.65 13.25 -77.33 -1.02 -9.68 16 11 C 0.08 1.92 6.69 22.55 0.15 2.07 16 12 O -0.29 -8.03 9.72 -79.67 -0.77 -8.81 16 13 C 0.08 2.39 2.81 32.06 0.09 2.48 16 14 H 0.10 2.65 6.28 -2.39 -0.01 2.64 16 15 C -0.12 -4.08 6.68 31.78 0.21 -3.86 16 16 C 0.18 8.06 5.45 86.73 0.47 8.54 16 17 N -0.62 -29.19 3.39 -691.52 -2.35 -31.54 16 18 C -0.24 -12.67 10.26 84.03 0.86 -11.81 16 19 H 0.08 4.16 7.84 -2.91 -0.02 4.13 16 20 C -0.06 -3.14 5.45 84.86 0.46 -2.68 16 21 N -0.95 -53.49 10.46 21.65 0.23 -53.26 16 22 Si 0.97 43.10 29.56 68.60 2.03 45.13 16 23 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 24 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 25 H -0.30 -13.40 7.11 99.48 0.71 -12.69 16 26 C 0.12 4.29 6.84 86.93 0.59 4.88 16 27 C -0.13 -2.92 8.28 22.60 0.19 -2.74 16 28 C -0.13 -2.69 5.87 -20.11 -0.12 -2.81 16 29 H 0.11 1.21 8.14 -2.38 -0.02 1.19 16 30 H 0.10 1.03 8.10 -2.39 -0.02 1.01 16 31 H 0.08 1.22 6.61 -2.39 -0.02 1.21 16 32 H 0.18 2.71 8.06 -2.91 -0.02 2.68 16 33 H 0.18 2.49 8.06 -2.91 -0.02 2.47 16 34 H 0.42 3.57 9.06 -74.06 -0.67 2.90 16 35 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 36 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 37 H 0.04 2.06 6.87 -2.39 -0.02 2.04 16 38 H 0.00 0.08 7.98 -2.39 -0.02 0.06 16 39 H 0.25 13.72 8.31 -92.71 -0.77 12.95 16 40 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.06 1.85 7.75 -2.39 -0.02 1.83 16 42 H 0.16 3.34 4.05 -2.91 -0.01 3.33 16 Total: -1.00 -69.13 351.91 3.78 -65.35 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: 0.42 Total: 9.71 kcal Atomic # 6 Polarization: 1.51 SS G_CDS: 4.77 Total: 6.28 kcal Atomic # 7 Polarization: -82.68 SS G_CDS: -2.12 Total: -84.80 kcal Atomic # 8 Polarization: -40.35 SS G_CDS: -1.32 Total: -41.67 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Total: -69.13 3.78 -65.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226532020.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.394 kcal (2) G-P(sol) polarization free energy of solvation -69.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds