Wall clock time and date at job start Tue Mar 31 2020 16:19:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35865 * 120.89905 * 2 1 4 4 C 1.40969 * 119.81293 * 179.97438 * 3 2 1 5 5 O 1.21812 * 119.15543 * 179.97438 * 4 3 2 6 6 O 1.34188 * 121.68853 * 0.03002 * 4 3 2 7 7 C 1.35100 * 121.48691 * 359.94601 * 6 4 3 8 8 C 1.38736 * 120.60854 * 180.02562 * 7 6 4 9 9 C 1.38340 * 120.00414 * 180.02562 * 8 7 6 10 10 O 1.35821 * 119.74585 * 179.97438 * 9 8 7 11 11 C 1.39819 * 120.50780 * 0.02562 * 9 8 7 12 12 O 1.36022 * 119.90625 * 179.97438 * 11 9 8 13 13 C 1.42896 * 117.00299 * 185.59485 * 12 11 9 14 14 H 1.08998 * 110.88657 * 38.49191 * 13 12 11 15 15 C 1.55152 * 111.04038 * 162.39937 * 13 12 11 16 16 C 1.54333 * 103.02297 * 153.39172 * 15 13 12 17 17 N 1.47018 * 107.26681 * 338.14306 * 16 15 13 18 18 C 1.36939 * 125.65118 * 178.84543 * 17 16 15 19 19 H 1.07998 * 120.00144 * 179.69002 * 18 17 16 20 20 C 1.38809 * 119.99567 * 359.41538 * 18 17 16 21 21 N 1.31620 * 120.00389 * 0.27882 * 20 18 17 22 22 Si 1.86796 * 119.99877 * 180.27062 * 20 18 17 23 23 H 1.48507 * 109.47218 * 0.02562 * 22 20 18 24 24 H 1.48506 * 109.47229 * 120.00006 * 22 20 18 25 25 H 1.48502 * 109.47591 * 240.00373 * 22 20 18 26 26 C 1.47422 * 108.70285 * 358.58329 * 17 16 15 27 27 C 1.37790 * 120.19187 * 0.23382 * 11 9 8 28 28 C 1.40046 * 119.64129 * 359.49752 * 27 11 9 29 29 H 1.09001 * 109.47660 * 270.02566 * 1 2 3 30 30 H 1.08998 * 109.47011 * 30.02502 * 1 2 3 31 31 H 1.09001 * 109.47239 * 150.01956 * 1 2 3 32 32 H 1.08003 * 120.09209 * 0.02562 * 3 2 1 33 33 H 1.08003 * 119.99639 * 359.97438 * 8 7 6 34 34 H 0.96703 * 113.99491 * 270.01775 * 10 9 8 35 35 H 1.09000 * 110.72301 * 271.95419 * 15 13 12 36 36 H 1.09000 * 110.72006 * 35.04664 * 15 13 12 37 37 H 1.08996 * 109.99462 * 218.66273 * 16 15 13 38 38 H 1.09010 * 109.77784 * 97.50054 * 16 15 13 39 39 H 0.97000 * 120.00213 * 179.97438 * 21 20 18 40 40 H 1.09002 * 110.36835 * 143.19451 * 26 17 16 41 41 H 1.09002 * 110.36492 * 265.41070 * 26 17 16 42 42 H 1.08000 * 120.17953 * 179.72543 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2047 1.1658 0.0000 4 6 3.6141 1.1391 0.0005 5 8 4.2276 2.1914 0.0001 6 8 4.2972 -0.0159 0.0005 7 6 3.6648 -1.2097 0.0010 8 6 4.3893 -2.3929 0.0014 9 6 3.7289 -3.6085 0.0014 10 8 4.4434 -4.7636 0.0013 11 6 2.3316 -3.6571 0.0003 12 8 1.6948 -4.8591 -0.0002 13 6 0.2715 -4.8392 -0.1254 14 1 -0.0463 -4.0665 -0.8254 15 6 -0.2699 -6.2301 -0.5490 16 6 -1.7050 -6.2324 0.0189 17 7 -1.7471 -5.2396 1.1024 18 6 -2.8492 -4.9200 1.8498 19 1 -2.7756 -4.1769 2.6300 20 6 -4.0622 -5.5471 1.6006 21 7 -4.1519 -6.4528 0.6498 22 14 -5.5674 -5.1058 2.6150 23 1 -5.2050 -4.0670 3.6124 24 1 -6.6312 -4.5826 1.7205 25 1 -6.0630 -6.3162 3.3181 26 6 -0.4048 -4.6496 1.2554 27 6 1.5976 -2.4909 -0.0055 28 6 2.2588 -1.2564 0.0003 29 1 -0.3634 0.0005 1.0276 30 1 -0.3633 0.8897 -0.5142 31 1 -0.3634 -0.8902 -0.5135 32 1 1.6809 2.1104 0.0004 33 1 5.4690 -2.3649 0.0010 34 1 4.6505 -5.0978 -0.8822 35 1 -0.2822 -6.3249 -1.6348 36 1 0.3226 -7.0275 -0.1004 37 1 -1.9490 -7.2197 0.4111 38 1 -2.4119 -5.9571 -0.7639 39 1 -4.9995 -6.8913 0.4760 40 1 -0.4816 -3.5896 1.4978 41 1 0.1548 -5.1754 2.0291 42 1 0.5183 -2.5287 -0.0108 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226532021.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:19:16 Heat of formation + Delta-G solvation = -75.785127 kcal Electronic energy + Delta-G solvation = -28247.090866 eV Core-core repulsion = 24159.681048 eV Total energy + Delta-G solvation = -4087.409818 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.09623 -40.39175 -38.58523 -37.89897 -36.87557 -36.32449 -34.86061 -32.43466 -30.57479 -29.64050 -29.06511 -28.89679 -27.54960 -24.83958 -24.25743 -23.58870 -22.26802 -20.69131 -20.30566 -20.04378 -18.97514 -17.93250 -17.54564 -17.03630 -16.94739 -16.73969 -15.79907 -15.56575 -14.94402 -14.82638 -14.77757 -14.36618 -13.99139 -13.95545 -13.82111 -13.62543 -13.30566 -13.24520 -12.85222 -12.52080 -12.36615 -12.24527 -12.00729 -11.79893 -11.49309 -11.11110 -11.02279 -10.91353 -10.52404 -10.48110 -10.45478 -10.18768 -10.12577 -9.99078 -9.82437 -8.91432 -8.75544 -8.10487 -7.02431 -5.86511 -3.21842 -0.12998 0.83148 1.19736 2.18960 2.56068 3.07143 3.30928 3.32706 3.37234 3.39260 3.73449 3.98280 3.99809 4.10038 4.37012 4.63735 4.65180 4.92882 5.02446 5.06580 5.13849 5.23602 5.28915 5.33750 5.37985 5.39673 5.45675 5.52821 5.55977 5.63549 5.86001 5.91476 5.96977 6.07507 6.21355 6.25580 6.38673 6.48697 6.98764 7.17433 7.29587 7.38387 7.41135 7.48587 7.66365 8.07806 9.05132 9.64780 10.28038 11.25144 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.014186 B = 0.003335 C = 0.002792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1973.272376 B = 8393.389739 C =10024.824212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.040 3.960 3 C -0.262 4.262 4 C 0.511 3.489 5 O -0.475 6.475 6 O -0.270 6.270 7 C 0.121 3.879 8 C -0.128 4.128 9 C 0.134 3.866 10 O -0.477 6.477 11 C 0.103 3.897 12 O -0.289 6.289 13 C 0.060 3.940 14 H 0.080 0.920 15 C -0.133 4.133 16 C 0.178 3.822 17 N -0.601 5.601 18 C -0.233 4.233 19 H 0.080 0.920 20 C -0.005 4.005 21 N -0.920 5.920 22 Si 0.914 3.086 23 H -0.279 1.279 24 H -0.289 1.289 25 H -0.289 1.289 26 C 0.118 3.882 27 C -0.140 4.140 28 C -0.121 4.121 29 H 0.096 0.904 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.163 0.837 33 H 0.155 0.845 34 H 0.395 0.605 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.050 0.950 38 H 0.053 0.947 39 H 0.254 0.746 40 H 0.042 0.958 41 H 0.032 0.968 42 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.987 7.565 -5.605 16.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.039 3.961 3 C -0.281 4.281 4 C 0.361 3.639 5 O -0.364 6.364 6 O -0.182 6.182 7 C 0.076 3.924 8 C -0.147 4.147 9 C 0.088 3.912 10 O -0.287 6.287 11 C 0.055 3.945 12 O -0.202 6.202 13 C 0.003 3.997 14 H 0.098 0.902 15 C -0.171 4.171 16 C 0.053 3.947 17 N -0.329 5.329 18 C -0.361 4.361 19 H 0.098 0.902 20 C -0.201 4.201 21 N -0.567 5.567 22 Si 0.744 3.256 23 H -0.204 1.204 24 H -0.216 1.216 25 H -0.216 1.216 26 C -0.009 4.009 27 C -0.158 4.158 28 C -0.122 4.122 29 H 0.114 0.886 30 H 0.103 0.897 31 H 0.103 0.897 32 H 0.180 0.820 33 H 0.173 0.827 34 H 0.252 0.748 35 H 0.088 0.912 36 H 0.091 0.909 37 H 0.069 0.931 38 H 0.071 0.929 39 H 0.064 0.936 40 H 0.060 0.940 41 H 0.050 0.950 42 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 13.286 7.850 -4.975 16.214 hybrid contribution -1.085 0.252 0.045 1.115 sum 12.202 8.102 -4.930 15.454 Atomic orbital electron populations 1.21076 0.88584 1.04684 1.04527 1.21608 0.97237 0.90765 0.86505 1.22388 0.92926 1.00339 1.12479 1.19128 0.88170 0.81194 0.75366 1.90976 1.72111 1.25729 1.47585 1.83514 1.43203 1.13567 1.77921 1.18565 0.89350 0.83298 1.01188 1.20420 1.01332 0.87771 1.05129 1.17477 0.86255 0.85849 1.01641 1.84848 1.73286 1.36911 1.33645 1.19349 0.91363 0.86069 0.97692 1.86234 1.22350 1.24898 1.86675 1.23982 0.75760 1.00546 0.99370 0.90196 1.23025 0.99440 0.94033 1.00651 1.21229 0.88669 0.94158 0.90635 1.44341 1.04261 1.44659 1.39671 1.19087 0.86171 1.19046 1.11820 0.90207 1.24819 0.97833 0.98677 0.98802 1.69941 1.24838 1.28985 1.32977 0.86025 0.82721 0.77666 0.79199 1.20423 1.21622 1.21595 1.21983 0.88185 0.97279 0.93475 1.21355 1.01420 0.89694 1.03360 1.18806 0.91448 0.93954 1.08015 0.88595 0.89654 0.89691 0.81993 0.82714 0.74800 0.91215 0.90938 0.93137 0.92874 0.93573 0.93973 0.95013 0.82596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.07 9.65 36.00 0.35 -0.72 16 2 C 0.04 0.40 6.08 -102.18 -0.62 -0.22 16 3 C -0.26 -2.78 9.62 -39.40 -0.38 -3.16 16 4 C 0.51 6.87 7.89 31.77 0.25 7.12 16 5 O -0.47 -7.69 17.91 -19.61 -0.35 -8.04 16 6 O -0.27 -3.55 9.82 -20.93 -0.21 -3.76 16 7 C 0.12 1.43 6.76 -38.48 -0.26 1.17 16 8 C -0.13 -1.34 9.91 -39.36 -0.39 -1.73 16 9 C 0.13 1.52 6.71 -38.95 -0.26 1.26 16 10 O -0.48 -4.91 13.25 -33.91 -0.45 -5.36 16 11 C 0.10 1.32 6.65 -39.15 -0.26 1.06 16 12 O -0.29 -4.29 9.73 -34.54 -0.34 -4.63 16 13 C 0.06 0.96 2.82 -24.58 -0.07 0.89 16 14 H 0.08 1.17 6.61 -51.93 -0.34 0.83 16 15 C -0.13 -2.27 6.68 -24.89 -0.17 -2.44 16 16 C 0.18 3.97 5.38 -3.06 -0.02 3.95 16 17 N -0.60 -14.27 3.39 -170.07 -0.58 -14.84 16 18 C -0.23 -6.11 10.28 -15.06 -0.15 -6.26 16 19 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 20 C 0.00 -0.12 5.49 -17.43 -0.10 -0.22 16 21 N -0.92 -25.53 10.31 55.49 0.57 -24.96 16 22 Si 0.91 21.00 29.55 -169.99 -5.02 15.98 16 23 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 24 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 25 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 26 C 0.12 2.25 6.59 -2.53 -0.02 2.24 16 27 C -0.14 -1.67 8.07 -39.07 -0.32 -1.99 16 28 C -0.12 -1.40 5.87 -105.01 -0.62 -2.01 16 29 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.08 0.54 8.10 -51.93 -0.42 0.12 16 31 H 0.08 0.70 6.60 -51.93 -0.34 0.36 16 32 H 0.16 1.38 8.06 -52.48 -0.42 0.96 16 33 H 0.16 1.31 8.06 -52.48 -0.42 0.89 16 34 H 0.39 2.12 9.06 45.56 0.41 2.53 16 35 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.05 1.26 7.53 -51.93 -0.39 0.87 16 38 H 0.05 1.29 7.36 -51.92 -0.38 0.91 16 39 H 0.25 6.85 8.31 -40.82 -0.34 6.51 16 40 H 0.04 0.75 7.23 -51.93 -0.38 0.38 16 41 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.16 1.84 3.73 -52.49 -0.20 1.65 16 LS Contribution 350.78 15.07 5.29 5.29 Total: -1.00 -32.03 350.78 -8.23 -40.26 By element: Atomic # 1 Polarization: 5.24 SS G_CDS: -4.12 Total: 1.12 kcal Atomic # 6 Polarization: 1.96 SS G_CDS: -3.03 Total: -1.06 kcal Atomic # 7 Polarization: -39.80 SS G_CDS: 0.00 Total: -39.80 kcal Atomic # 8 Polarization: -20.44 SS G_CDS: -1.34 Total: -21.78 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.03 -8.23 -40.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226532021.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.524 kcal (2) G-P(sol) polarization free energy of solvation -32.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds