Wall clock time and date at job start Tue Mar 31 2020 16:18:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35828 * 120.89705 * 2 1 4 4 C 1.41025 * 119.83165 * 180.02562 * 3 2 1 5 5 O 1.21797 * 119.15516 * 180.02562 * 4 3 2 6 6 O 1.34204 * 121.68383 * 359.97438 * 4 3 2 7 7 C 1.35098 * 121.45127 * 359.97438 * 6 4 3 8 8 C 1.40695 * 119.86487 * 0.02562 * 7 6 4 9 9 C 1.39944 * 120.05324 * 180.02562 * 8 7 6 10 10 C 1.36563 * 119.87038 * 0.02562 * 9 8 7 11 11 C 1.39190 * 120.48177 * 359.74743 * 10 9 8 12 12 O 1.35866 * 119.74556 * 180.25860 * 11 10 9 13 13 C 1.38893 * 120.50822 * 0.50751 * 11 10 9 14 14 O 1.36078 * 120.14571 * 179.76869 * 13 11 10 15 15 C 1.42905 * 117.00016 * 269.72429 * 14 13 11 16 16 H 1.08993 * 110.91484 * 32.45334 * 15 14 13 17 17 C 1.55165 * 111.00385 * 156.35441 * 15 14 13 18 18 C 1.54327 * 103.02096 * 153.38359 * 17 15 14 19 19 N 1.47032 * 107.26586 * 338.13514 * 18 17 15 20 20 C 1.36931 * 125.64719 * 178.85180 * 19 18 17 21 21 H 1.08002 * 120.00098 * 179.69148 * 20 19 18 22 22 C 1.38812 * 120.00429 * 359.69263 * 20 19 18 23 23 N 1.31624 * 119.99535 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00484 * 179.97438 * 22 20 19 25 25 H 1.48493 * 109.47326 * 270.00576 * 24 22 20 26 26 H 1.48506 * 109.46545 * 30.00326 * 24 22 20 27 27 H 1.48498 * 109.47210 * 150.00037 * 24 22 20 28 28 C 1.47428 * 108.70123 * 358.58848 * 19 18 17 29 29 H 1.09005 * 109.47138 * 90.00659 * 1 2 3 30 30 H 1.09001 * 109.47319 * 210.00660 * 1 2 3 31 31 H 1.09003 * 109.47033 * 330.00703 * 1 2 3 32 32 H 1.07998 * 120.08449 * 359.97438 * 3 2 1 33 33 H 1.07997 * 120.06147 * 180.02562 * 9 8 7 34 34 H 1.07992 * 119.75430 * 179.97438 * 10 9 8 35 35 H 0.96700 * 113.99725 * 270.25324 * 12 11 10 36 36 H 1.09004 * 110.71558 * 271.93916 * 17 15 14 37 37 H 1.08999 * 110.71844 * 35.03066 * 17 15 14 38 38 H 1.09006 * 109.99153 * 218.66631 * 18 17 15 39 39 H 1.08994 * 109.78600 * 97.49281 * 18 17 15 40 40 H 0.97005 * 119.99717 * 179.97438 * 23 22 20 41 41 H 1.08997 * 110.36556 * 143.19064 * 28 19 18 42 42 H 1.08991 * 110.36533 * 265.40365 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2045 1.1655 0.0000 4 6 3.6145 1.1393 -0.0005 5 8 4.2275 2.1917 -0.0001 6 8 4.2980 -0.0156 -0.0006 7 6 3.6652 -1.2092 0.0005 8 6 2.2591 -1.2567 0.0010 9 6 1.5995 -2.4910 0.0026 10 6 2.3234 -3.6490 0.0042 11 6 3.7148 -3.6118 -0.0011 12 8 4.4201 -4.7731 -0.0048 13 6 4.3878 -2.3968 0.0025 14 8 5.7483 -2.3692 0.0021 15 6 6.3973 -2.3540 1.2751 16 1 5.8199 -2.9110 2.0129 17 6 7.8436 -2.9058 1.1687 18 6 8.5687 -2.2090 2.3393 19 7 7.7969 -1.0034 2.6751 20 6 8.0947 -0.1184 3.6765 21 1 7.4649 0.7435 3.8406 22 6 9.2062 -0.3289 4.4810 23 7 9.9741 -1.3790 4.2808 24 14 9.6129 0.8789 5.8468 25 1 10.5056 1.9414 5.3184 26 1 8.3595 1.4925 6.3543 27 1 10.2969 0.1628 6.9534 28 6 6.6527 -0.9020 1.7508 29 1 -0.3634 -0.0001 -1.0277 30 1 -0.3634 -0.8899 0.5139 31 1 -0.3633 0.8901 0.5137 32 1 1.6806 2.1099 -0.0004 33 1 0.5202 -2.5276 0.0026 34 1 1.8125 -4.6004 0.0058 35 1 4.6243 -5.1120 0.8775 36 1 7.8535 -3.9884 1.2955 37 1 8.2938 -2.6264 0.2161 38 1 9.5790 -1.9306 2.0391 39 1 8.6063 -2.8767 3.1999 40 1 10.7511 -1.5258 4.8427 41 1 5.7775 -0.5140 2.2718 42 1 6.9041 -0.2625 0.9048 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001228622980.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:18:05 Heat of formation + Delta-G solvation = -96.954003 kcal Electronic energy + Delta-G solvation = -28875.159422 eV Core-core repulsion = 24786.831653 eV Total energy + Delta-G solvation = -4088.327769 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 3.79 seconds Orbital eigenvalues (eV) -43.10825 -41.12932 -39.69864 -38.94948 -37.99919 -37.60522 -35.75988 -34.34254 -31.61943 -30.90878 -30.30946 -29.60179 -28.95673 -26.55071 -25.47739 -24.38624 -23.10755 -22.16253 -21.99474 -21.04666 -19.73601 -19.11990 -18.74355 -18.67903 -17.98734 -17.84334 -16.92950 -16.81716 -16.46754 -16.08627 -15.94332 -15.56739 -15.10476 -14.88092 -14.57409 -14.46692 -14.35240 -14.26763 -14.11665 -13.87558 -13.55925 -13.34115 -13.17110 -12.97140 -12.77832 -12.67648 -12.66987 -12.24231 -12.08288 -11.97495 -11.84261 -11.70624 -11.47593 -11.00252 -10.88295 -10.79157 -9.74708 -9.43721 -9.03237 -7.93913 -5.31790 -0.94698 -0.20096 0.26674 1.24965 1.40240 1.43726 1.52268 1.63145 2.19277 2.43763 2.57708 2.91857 3.15437 3.23456 3.26544 3.36776 3.58686 3.66753 3.82906 3.91005 3.94315 3.99250 4.15013 4.28133 4.41744 4.52224 4.58494 4.62144 4.78873 4.80530 4.83023 4.89010 4.91856 4.95784 5.05056 5.17041 5.32292 5.32631 5.42428 5.53579 5.63305 5.95473 6.08512 6.21437 6.42313 6.70957 7.00835 7.63627 8.28375 9.16225 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.012844 B = 0.004014 C = 0.003308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2179.477669 B = 6974.532774 C = 8461.842969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.067 3.933 3 C -0.285 4.285 4 C 0.492 3.508 5 O -0.526 6.526 6 O -0.289 6.289 7 C 0.113 3.887 8 C -0.166 4.166 9 C -0.020 4.020 10 C -0.141 4.141 11 C 0.154 3.846 12 O -0.488 6.488 13 C 0.015 3.985 14 O -0.318 6.318 15 C 0.097 3.903 16 H 0.087 0.913 17 C -0.119 4.119 18 C 0.187 3.813 19 N -0.624 5.624 20 C -0.256 4.256 21 H 0.070 0.930 22 C -0.056 4.056 23 N -0.945 5.945 24 Si 0.982 3.018 25 H -0.287 1.287 26 H -0.271 1.271 27 H -0.282 1.282 28 C 0.128 3.872 29 H 0.116 0.884 30 H 0.111 0.889 31 H 0.096 0.904 32 H 0.182 0.818 33 H 0.202 0.798 34 H 0.188 0.812 35 H 0.416 0.584 36 H 0.107 0.893 37 H 0.068 0.932 38 H 0.012 0.988 39 H 0.031 0.969 40 H 0.252 0.748 41 H 0.024 0.976 42 H 0.004 0.996 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.458 -9.174 -9.271 30.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.066 3.934 3 C -0.304 4.304 4 C 0.346 3.654 5 O -0.418 6.418 6 O -0.201 6.201 7 C 0.067 3.933 8 C -0.167 4.167 9 C -0.037 4.037 10 C -0.159 4.159 11 C 0.108 3.892 12 O -0.302 6.302 13 C -0.031 4.031 14 O -0.234 6.234 15 C 0.041 3.959 16 H 0.105 0.895 17 C -0.157 4.157 18 C 0.062 3.938 19 N -0.352 5.352 20 C -0.384 4.384 21 H 0.088 0.912 22 C -0.249 4.249 23 N -0.593 5.593 24 Si 0.809 3.191 25 H -0.213 1.213 26 H -0.196 1.196 27 H -0.208 1.208 28 C 0.002 3.998 29 H 0.134 0.866 30 H 0.129 0.871 31 H 0.115 0.885 32 H 0.199 0.801 33 H 0.218 0.782 34 H 0.205 0.795 35 H 0.277 0.723 36 H 0.125 0.875 37 H 0.087 0.913 38 H 0.030 0.970 39 H 0.050 0.950 40 H 0.061 0.939 41 H 0.042 0.958 42 H 0.022 0.978 Dipole moment (debyes) X Y Z Total from point charges -26.714 -8.614 -9.857 29.749 hybrid contribution 1.519 1.314 1.279 2.381 sum -25.195 -7.299 -8.579 27.598 Atomic orbital electron populations 1.21259 0.84354 1.06563 1.05906 1.22009 0.99330 0.88851 0.83180 1.22405 0.90150 1.02658 1.15168 1.20097 0.90034 0.80603 0.74712 1.90936 1.73453 1.27475 1.49985 1.83626 1.44780 1.14558 1.77159 1.19954 0.91929 0.82412 0.98965 1.19351 0.89343 0.97147 1.10878 1.21395 1.02816 0.87614 0.91866 1.21544 0.90509 1.01921 1.01948 1.18866 0.90964 0.83593 0.95801 1.84772 1.74979 1.34988 1.35476 1.18874 0.84134 0.90499 1.09550 1.86215 1.14702 1.93447 1.29085 1.23438 0.94007 0.95193 0.83291 0.89541 1.22847 0.92374 1.01401 0.99125 1.20986 0.92732 0.86730 0.93341 1.44660 1.27917 1.27108 1.35510 1.19357 1.08805 1.03184 1.07055 0.91200 1.25655 0.97174 1.00113 1.01997 1.70146 1.17680 1.29584 1.41897 0.85047 0.77993 0.77793 0.78274 1.21347 1.19641 1.20758 1.21837 0.89885 0.96162 0.91911 0.86597 0.87054 0.88529 0.80104 0.78159 0.79507 0.72275 0.87501 0.91339 0.96966 0.95043 0.93864 0.95804 0.97775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.35 9.64 71.24 0.69 0.33 16 2 C 0.07 1.01 6.08 -18.28 -0.11 0.90 16 3 C -0.28 -6.57 9.62 22.39 0.22 -6.35 16 4 C 0.49 17.93 7.89 68.50 0.54 18.47 16 5 O -0.53 -23.75 17.91 18.96 0.34 -23.41 16 6 O -0.29 -11.25 8.84 19.05 0.17 -11.08 16 7 C 0.11 3.36 6.77 23.06 0.16 3.52 16 8 C -0.17 -3.07 5.87 -20.12 -0.12 -3.19 16 9 C -0.02 -0.17 9.36 22.29 0.21 0.03 16 10 C -0.14 -1.50 9.90 22.11 0.22 -1.28 16 11 C 0.15 3.10 6.71 22.66 0.15 3.25 16 12 O -0.49 -8.97 13.26 -77.77 -1.03 -10.00 16 13 C 0.01 0.43 5.66 22.61 0.13 0.56 16 14 O -0.32 -11.83 9.46 -70.40 -0.67 -12.50 16 15 C 0.10 3.81 3.56 31.99 0.11 3.93 16 16 H 0.09 3.01 7.99 -2.39 -0.02 2.99 16 17 C -0.12 -4.78 6.68 31.79 0.21 -4.56 16 18 C 0.19 9.79 5.38 86.73 0.47 10.25 16 19 N -0.62 -35.86 3.39 -691.96 -2.35 -38.20 16 20 C -0.26 -15.75 10.28 84.03 0.86 -14.89 16 21 H 0.07 4.28 7.83 -2.91 -0.02 4.25 16 22 C -0.06 -3.34 5.49 84.86 0.47 -2.88 16 23 N -0.95 -58.31 10.31 21.65 0.22 -58.09 16 24 Si 0.98 48.07 29.55 68.60 2.03 50.09 16 25 H -0.29 -13.93 7.11 99.48 0.71 -13.23 16 26 H -0.27 -12.76 7.11 99.48 0.71 -12.05 16 27 H -0.28 -13.35 7.11 99.48 0.71 -12.65 16 28 C 0.13 6.43 6.19 86.86 0.54 6.97 16 29 H 0.12 -0.06 8.14 -2.38 -0.02 -0.08 16 30 H 0.11 -0.26 6.62 -2.39 -0.02 -0.27 16 31 H 0.10 0.17 8.10 -2.39 -0.02 0.15 16 32 H 0.18 3.24 8.06 -2.91 -0.02 3.22 16 33 H 0.20 -0.37 6.52 -2.91 -0.02 -0.39 16 34 H 0.19 0.54 8.06 -2.91 -0.02 0.51 16 35 H 0.42 4.15 9.06 -74.06 -0.67 3.48 16 36 H 0.11 3.43 8.14 -2.38 -0.02 3.41 16 37 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 38 H 0.01 0.71 7.52 -2.38 -0.02 0.69 16 39 H 0.03 1.74 7.37 -2.39 -0.02 1.73 16 40 H 0.25 14.91 8.31 -92.70 -0.77 14.14 16 41 H 0.02 1.21 8.14 -2.39 -0.02 1.19 16 42 H 0.00 0.25 8.14 -2.39 -0.02 0.23 16 Total: -1.00 -91.91 355.27 3.85 -88.05 By element: Atomic # 1 Polarization: -0.33 SS G_CDS: 0.40 Total: 0.08 kcal Atomic # 6 Polarization: 10.32 SS G_CDS: 4.74 Total: 15.06 kcal Atomic # 7 Polarization: -94.17 SS G_CDS: -2.13 Total: -96.29 kcal Atomic # 8 Polarization: -55.80 SS G_CDS: -1.19 Total: -56.99 kcal Atomic # 14 Polarization: 48.07 SS G_CDS: 2.03 Total: 50.09 kcal Total: -91.91 3.85 -88.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228622980.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.902 kcal (2) G-P(sol) polarization free energy of solvation -91.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.79 seconds