Wall clock time and date at job start Tue Mar 31 2020 16:14:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34402 * 118.58751 * 2 1 4 4 C 1.42164 * 119.61776 * 179.97438 * 3 2 1 5 5 O 1.21971 * 121.38528 * 179.97438 * 4 3 2 6 6 C 1.47152 * 117.22799 * 359.97438 * 4 3 2 7 7 C 1.40074 * 121.43595 * 180.02562 * 6 4 3 8 8 O 1.35698 * 120.27274 * 359.97438 * 7 6 4 9 9 C 1.42906 * 117.00265 * 174.49152 * 8 7 6 10 10 H 1.08994 * 110.63962 * 326.96881 * 9 8 7 11 11 C 1.55151 * 110.71996 * 203.82951 * 9 8 7 12 12 C 1.54913 * 101.58425 * 206.13493 * 11 9 8 13 13 N 1.47424 * 104.82830 * 37.00784 * 12 11 9 14 14 C 1.36940 * 125.64827 * 155.91380 * 13 12 11 15 15 H 1.07999 * 119.99767 * 179.97438 * 14 13 12 16 16 C 1.38806 * 119.99768 * 359.97157 * 14 13 12 17 17 N 1.31624 * 120.00365 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99821 * 180.02562 * 16 14 13 19 19 H 1.48493 * 109.47502 * 60.00456 * 18 16 14 20 20 H 1.48505 * 109.46877 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47172 * 300.00233 * 18 16 14 22 22 C 1.47322 * 108.73866 * 335.71983 * 13 12 11 23 23 C 1.38237 * 119.46242 * 180.02562 * 7 6 4 24 24 C 1.39100 * 120.17086 * 359.91789 * 23 7 6 25 25 O 1.35746 * 119.66713 * 180.02562 * 24 23 7 26 26 C 1.38605 * 120.67233 * 0.06310 * 24 23 7 27 27 C 1.38633 * 120.01858 * 359.97438 * 26 24 23 28 28 O 1.33795 * 118.58615 * 179.73009 * 2 1 3 29 29 H 1.09000 * 109.46741 * 90.00315 * 1 2 3 30 30 H 1.09000 * 109.46880 * 330.00119 * 1 2 3 31 31 H 1.09006 * 109.46944 * 209.99790 * 1 2 3 32 32 H 1.08002 * 120.19197 * 359.95560 * 3 2 1 33 33 H 1.09005 * 111.00684 * 324.21019 * 11 9 8 34 34 H 1.09006 * 111.00794 * 88.01859 * 11 9 8 35 35 H 1.08995 * 110.36912 * 155.84594 * 12 11 9 36 36 H 1.09000 * 110.36561 * 278.17395 * 12 11 9 37 37 H 0.96995 * 119.99997 * 179.97438 * 17 16 14 38 38 H 1.09000 * 110.06250 * 241.87336 * 22 13 12 39 39 H 1.08994 * 109.85071 * 120.61141 * 22 13 12 40 40 H 1.08004 * 119.91673 * 179.97438 * 23 7 6 41 41 H 0.96698 * 113.99673 * 270.02614 * 25 24 23 42 42 H 1.08006 * 119.98941 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1501 1.1802 0.0000 4 6 3.5715 1.2057 0.0006 5 8 4.1879 2.2582 0.0001 6 6 4.2682 -0.0904 0.0017 7 6 5.6668 -0.1681 0.0028 8 8 6.4148 0.9641 0.0024 9 6 7.8298 0.8070 0.1259 10 1 8.0677 -0.0540 0.7504 11 6 8.4774 2.0957 0.6979 12 6 9.9147 2.0010 0.1278 13 7 9.7484 1.4328 -1.2223 14 6 10.6235 1.5833 -2.2649 15 1 10.4102 1.1250 -3.2193 16 6 11.7844 2.3250 -2.0950 17 7 12.0445 2.8832 -0.9317 18 14 12.9777 2.5309 -3.5173 19 1 12.2876 3.1993 -4.6497 20 1 14.1300 3.3597 -3.0806 21 1 13.4645 1.1970 -3.9521 22 6 8.4874 0.6722 -1.2637 23 6 6.2790 -1.4075 0.0033 24 6 5.5103 -2.5669 0.0044 25 8 6.1221 -3.7786 0.0055 26 6 4.1260 -2.4974 0.0037 27 6 3.4935 -1.2638 0.0024 28 8 2.1472 -1.1748 0.0055 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3633 0.8900 0.5138 31 1 -0.3633 -0.8901 0.5138 32 1 1.5903 2.1038 -0.0007 33 1 7.9684 2.9859 0.3283 34 1 8.4867 2.0777 1.7877 35 1 10.3658 2.9915 0.0696 36 1 10.5247 1.3410 0.7446 37 1 12.8559 3.4012 -0.8129 38 1 8.6906 -0.3772 -1.4774 39 1 7.8296 1.0874 -2.0271 40 1 7.3568 -1.4759 0.0038 41 1 6.2996 -4.1303 -0.8777 42 1 3.5400 -3.4046 0.0050 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234815545.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:14:25 Heat of formation + Delta-G solvation = -63.145935 kcal Electronic energy + Delta-G solvation = -28239.404109 eV Core-core repulsion = 24152.542368 eV Total energy + Delta-G solvation = -4086.861741 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 1.89 seconds Orbital eigenvalues (eV) -42.06806 -40.12090 -38.80740 -38.31858 -36.70911 -35.60912 -33.85514 -32.33236 -30.99213 -30.10666 -29.20983 -28.43660 -27.28524 -24.69199 -24.36467 -23.25236 -22.19520 -20.83774 -20.30664 -19.56534 -18.60901 -17.85025 -17.30259 -17.07866 -16.74372 -16.69924 -15.63305 -15.35004 -15.16657 -14.83096 -14.71642 -14.37649 -14.06711 -13.90823 -13.68779 -13.52593 -13.43722 -13.18613 -13.07322 -12.51052 -12.38712 -11.97790 -11.82602 -11.69638 -11.37655 -11.13384 -11.01998 -10.79811 -10.47318 -10.31245 -10.12426 -9.86524 -9.63724 -9.60116 -9.47093 -8.75947 -8.69293 -8.27019 -6.90908 -5.69423 -3.12149 0.44488 0.64393 1.34552 1.96482 2.73425 3.16142 3.39667 3.43666 3.45287 3.58690 3.86229 4.00012 4.31937 4.44955 4.52960 4.68024 4.76826 4.82848 4.93324 4.95722 5.17295 5.21036 5.25420 5.36368 5.45787 5.49144 5.55576 5.58669 5.70452 5.70666 5.97038 6.02460 6.17562 6.27890 6.41133 6.45617 6.57337 6.59379 6.99428 7.26981 7.41724 7.52325 7.56590 7.76447 7.79461 8.29789 9.16437 9.76464 10.39647 11.34906 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.017844 B = 0.003011 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.734969 B = 9295.495023 C =10140.344611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.144 3.856 3 C -0.314 4.314 4 C 0.418 3.582 5 O -0.446 6.446 6 C -0.276 4.276 7 C 0.245 3.755 8 O -0.263 6.263 9 C 0.059 3.941 10 H 0.081 0.919 11 C -0.134 4.134 12 C 0.154 3.846 13 N -0.600 5.600 14 C -0.225 4.225 15 H 0.078 0.922 16 C -0.009 4.009 17 N -0.923 5.923 18 Si 0.918 3.082 19 H -0.284 1.284 20 H -0.289 1.289 21 H -0.285 1.285 22 C 0.120 3.880 23 C -0.272 4.272 24 C 0.213 3.787 25 O -0.491 6.491 26 C -0.220 4.220 27 C 0.197 3.803 28 O -0.222 6.222 29 H 0.095 0.905 30 H 0.099 0.901 31 H 0.086 0.914 32 H 0.158 0.842 33 H 0.078 0.922 34 H 0.067 0.933 35 H 0.115 0.885 36 H 0.017 0.983 37 H 0.254 0.746 38 H 0.027 0.973 39 H 0.037 0.963 40 H 0.152 0.848 41 H 0.402 0.598 42 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.720 -11.315 3.381 25.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.097 3.903 3 C -0.334 4.334 4 C 0.302 3.698 5 O -0.326 6.326 6 C -0.278 4.278 7 C 0.195 3.805 8 O -0.173 6.173 9 C 0.003 3.997 10 H 0.099 0.901 11 C -0.172 4.172 12 C 0.029 3.971 13 N -0.327 5.327 14 C -0.353 4.353 15 H 0.096 0.904 16 C -0.205 4.205 17 N -0.571 5.571 18 Si 0.748 3.252 19 H -0.211 1.211 20 H -0.215 1.215 21 H -0.212 1.212 22 C -0.006 4.006 23 C -0.291 4.291 24 C 0.168 3.832 25 O -0.303 6.303 26 C -0.239 4.239 27 C 0.152 3.848 28 O -0.128 6.128 29 H 0.113 0.887 30 H 0.117 0.883 31 H 0.105 0.895 32 H 0.175 0.825 33 H 0.096 0.904 34 H 0.086 0.914 35 H 0.133 0.867 36 H 0.035 0.965 37 H 0.065 0.935 38 H 0.045 0.955 39 H 0.055 0.945 40 H 0.169 0.831 41 H 0.260 0.740 42 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -22.372 -10.575 3.922 25.055 hybrid contribution 0.881 -0.233 -1.197 1.504 sum -21.491 -10.808 2.725 24.210 Atomic orbital electron populations 1.20992 0.85506 1.05207 1.04802 1.22191 0.94481 0.82773 0.90856 1.22651 0.96775 0.98499 1.15506 1.18341 0.88513 0.87735 0.75253 1.90818 1.70544 1.32507 1.38699 1.20123 0.92331 0.95727 1.19651 1.18486 0.89319 0.86251 0.86451 1.86423 1.19999 1.27029 1.83805 1.23948 0.75842 1.01087 0.98787 0.90098 1.23222 0.99092 0.95480 0.99454 1.22011 0.88987 1.02256 0.83855 1.44426 1.19880 1.58633 1.09799 1.19029 0.98705 1.27230 0.90368 0.90413 1.24802 0.98226 1.00117 0.97349 1.69746 1.26674 1.38644 1.22030 0.86105 0.80323 0.77634 0.81140 1.21060 1.21472 1.21167 1.21730 0.89748 0.95534 0.93604 1.21690 1.02335 0.91031 1.14048 1.17789 0.88654 0.84629 0.92155 1.84728 1.79718 1.31682 1.34180 1.20293 0.93627 0.95679 1.14299 1.18477 0.79089 0.93000 0.94246 1.82985 1.19059 1.31975 1.78742 0.88659 0.88252 0.89480 0.82491 0.90375 0.91388 0.86738 0.96481 0.93492 0.95504 0.94498 0.83058 0.73956 0.83564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.45 10.14 36.01 0.36 -0.09 16 2 C 0.14 1.29 6.92 -35.66 -0.25 1.05 16 3 C -0.31 -3.61 9.54 -39.43 -0.38 -3.99 16 4 C 0.42 6.78 6.99 -34.46 -0.24 6.54 16 5 O -0.45 -8.99 16.27 -15.66 -0.25 -9.24 16 6 C -0.28 -4.26 5.90 -104.70 -0.62 -4.87 16 7 C 0.25 4.07 6.68 -38.89 -0.26 3.81 16 8 O -0.26 -5.11 8.19 -39.40 -0.32 -5.43 16 9 C 0.06 1.14 2.74 -24.90 -0.07 1.08 16 10 H 0.08 1.41 6.27 -51.93 -0.33 1.08 16 11 C -0.13 -2.75 6.81 -24.58 -0.17 -2.92 16 12 C 0.15 3.79 5.89 -2.53 -0.01 3.78 16 13 N -0.60 -15.74 3.40 -169.84 -0.58 -16.32 16 14 C -0.23 -6.36 10.28 -15.06 -0.15 -6.52 16 15 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 16 C -0.01 -0.27 5.49 -17.43 -0.10 -0.36 16 17 N -0.92 -26.95 10.09 55.49 0.56 -26.39 16 18 Si 0.92 22.17 29.55 -169.99 -5.02 17.14 16 19 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 20 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 21 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 22 C 0.12 2.63 6.82 -2.90 -0.02 2.61 16 23 C -0.27 -3.86 8.83 -39.26 -0.35 -4.21 16 24 C 0.21 2.50 6.69 -39.13 -0.26 2.24 16 25 O -0.49 -4.77 13.47 -18.94 -0.26 -5.02 16 26 C -0.22 -2.39 9.93 -39.30 -0.39 -2.78 16 27 C 0.20 2.45 6.77 -38.54 -0.26 2.19 16 28 O -0.22 -2.30 9.67 5.32 0.05 -2.25 16 29 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.10 0.27 8.03 -51.93 -0.42 -0.15 16 31 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.16 1.48 8.03 -52.49 -0.42 1.05 16 33 H 0.08 1.69 8.14 -51.93 -0.42 1.26 16 34 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.12 3.16 5.87 -51.93 -0.31 2.85 16 36 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 38 H 0.03 0.56 7.79 -51.93 -0.40 0.15 16 39 H 0.04 0.85 8.06 -51.93 -0.42 0.43 16 40 H 0.15 2.16 5.61 -52.48 -0.29 1.87 16 41 H 0.40 1.92 9.06 45.56 0.41 2.33 16 42 H 0.15 1.23 8.06 -52.48 -0.42 0.80 16 LS Contribution 351.99 15.07 5.30 5.30 Total: -1.00 -35.32 351.99 -7.93 -43.25 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: -4.26 Total: 1.41 kcal Atomic # 6 Polarization: 0.71 SS G_CDS: -3.16 Total: -2.44 kcal Atomic # 7 Polarization: -42.70 SS G_CDS: -0.02 Total: -42.72 kcal Atomic # 8 Polarization: -21.17 SS G_CDS: -0.78 Total: -21.95 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -35.32 -7.93 -43.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234815545.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.893 kcal (2) G-P(sol) polarization free energy of solvation -35.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.89 seconds