Wall clock time and date at job start Tue Mar 31 2020 16:14:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34403 * 118.58437 * 2 1 4 4 C 1.42157 * 119.61714 * 180.02562 * 3 2 1 5 5 O 1.21972 * 121.38792 * 180.02562 * 4 3 2 6 6 C 1.47153 * 117.22922 * 359.80476 * 4 3 2 7 7 C 1.40082 * 121.44017 * 179.70523 * 6 4 3 8 8 O 1.35703 * 120.26926 * 0.45932 * 7 6 4 9 9 C 1.42901 * 116.99968 * 173.68214 * 8 7 6 10 10 C 1.53516 * 114.17060 * 201.78714 * 9 8 7 11 11 N 1.47479 * 87.93275 * 220.33181 * 10 9 8 12 12 C 1.46896 * 111.00113 * 138.70352 * 11 10 9 13 13 C 1.50696 * 109.47468 * 170.00146 * 12 11 10 14 14 H 1.08009 * 119.99796 * 359.97438 * 13 12 11 15 15 C 1.37872 * 120.00405 * 180.02562 * 13 12 11 16 16 N 1.31517 * 120.00087 * 179.97438 * 15 13 12 17 17 Si 1.86801 * 119.99984 * 359.97438 * 15 13 12 18 18 H 1.48500 * 109.47184 * 270.00583 * 17 15 13 19 19 H 1.48507 * 109.46806 * 30.00217 * 17 15 13 20 20 H 1.48494 * 109.47340 * 149.99935 * 17 15 13 21 21 C 1.47484 * 87.83510 * 27.01248 * 11 10 9 22 22 C 1.38230 * 119.46337 * 180.19473 * 7 6 4 23 23 C 1.39099 * 120.17117 * 0.26791 * 22 7 6 24 24 O 1.35744 * 119.66596 * 179.97438 * 23 22 7 25 25 C 1.38598 * 120.67470 * 0.02562 * 23 22 7 26 26 C 1.38638 * 120.02115 * 359.95689 * 25 23 22 27 27 O 1.33781 * 118.58906 * 180.02562 * 2 1 3 28 28 H 1.09001 * 109.46890 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47176 * 299.97660 * 1 2 3 30 30 H 1.08997 * 109.47384 * 59.97531 * 1 2 3 31 31 H 1.08007 * 120.19047 * 0.02562 * 3 2 1 32 32 H 1.08998 * 113.38532 * 334.86878 * 9 8 7 33 33 H 1.08998 * 113.47182 * 105.56653 * 10 9 8 34 34 H 1.08997 * 113.53142 * 335.10922 * 10 9 8 35 35 H 1.08997 * 109.46880 * 50.00044 * 12 11 10 36 36 H 1.09000 * 109.47209 * 290.00186 * 12 11 10 37 37 H 0.97005 * 120.00031 * 180.02562 * 16 15 13 38 38 H 1.08995 * 113.48069 * 87.75497 * 21 11 10 39 39 H 1.09001 * 113.47234 * 218.22536 * 21 11 10 40 40 H 1.07996 * 119.91715 * 180.25279 * 22 7 6 41 41 H 0.96701 * 114.00007 * 89.99873 * 24 23 22 42 42 H 1.08004 * 119.99385 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1501 1.1802 0.0000 4 6 3.5714 1.2058 -0.0006 5 8 4.1878 2.2583 -0.0001 6 6 4.2682 -0.0903 0.0034 7 6 5.6668 -0.1680 -0.0030 8 8 6.4148 0.9643 -0.0036 9 6 7.8289 0.8077 0.1299 10 6 8.5543 2.0597 0.6430 11 7 9.6275 1.7698 -0.3262 12 6 10.0990 3.0013 -0.9735 13 6 11.3469 2.7066 -1.7652 14 1 11.7498 1.7047 -1.7851 15 6 11.9750 3.7162 -2.4632 16 7 13.0644 3.4591 -3.1538 17 14 11.2786 5.4492 -2.4282 18 1 10.3124 5.6171 -3.5434 19 1 10.5862 5.6783 -1.1346 20 1 12.3835 6.4298 -2.5786 21 6 8.6167 1.0895 -1.1572 22 6 6.2790 -1.4073 -0.0031 23 6 5.5103 -2.5667 -0.0025 24 8 6.1222 -3.7784 -0.0032 25 6 4.1261 -2.4973 -0.0024 26 6 3.4934 -1.2637 -0.0020 27 8 2.1472 -1.1747 -0.0005 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5135 0.8902 30 1 -0.3634 0.5142 -0.8897 31 1 1.5902 2.1038 0.0004 32 1 8.1163 -0.1136 0.6364 33 1 8.8745 1.9807 1.6819 34 1 8.0209 2.9873 0.4357 35 1 10.3197 3.7500 -0.2127 36 1 9.3255 3.3795 -1.6419 37 1 13.5065 4.1694 -3.6446 38 1 8.0993 1.7577 -1.8455 39 1 8.9899 0.1884 -1.6439 40 1 7.3568 -1.4758 -0.0039 41 1 6.3002 -4.1296 0.8801 42 1 3.5400 -3.4045 -0.0024 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234821602.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:14:20 Heat of formation + Delta-G solvation = -46.568535 kcal Electronic energy + Delta-G solvation = -27751.943274 eV Core-core repulsion = 23665.800383 eV Total energy + Delta-G solvation = -4086.142891 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.20411 -40.54907 -39.35056 -38.69045 -37.71149 -35.87840 -33.95993 -32.80363 -31.14480 -30.39051 -29.69139 -28.42512 -25.83996 -25.50729 -24.53341 -23.42940 -22.44936 -21.40562 -20.23183 -19.61017 -18.71003 -17.97086 -17.43642 -17.22466 -16.81538 -16.75705 -15.81783 -15.64506 -15.35167 -15.16710 -14.71759 -14.67566 -14.35994 -14.07835 -13.89514 -13.75908 -13.52894 -13.35331 -13.18904 -13.11048 -12.55713 -12.33654 -12.21139 -11.97242 -11.76699 -11.52500 -11.27824 -11.07209 -10.68054 -10.20847 -10.06739 -9.79998 -9.76086 -9.58148 -9.38726 -8.90542 -8.59596 -8.43152 -8.18112 -6.06593 -4.04650 0.29947 0.50470 1.20095 1.84705 2.58713 2.92150 3.28728 3.36112 3.38427 3.45209 3.69332 3.87848 4.19904 4.37398 4.41024 4.47510 4.53859 4.63785 4.66331 4.68245 4.85783 4.86006 4.99171 5.08421 5.23663 5.25086 5.35673 5.44756 5.55175 5.59522 5.81281 5.83338 5.88286 5.97174 6.05661 6.10068 6.13030 6.30908 6.68549 6.87219 7.11545 7.23282 7.28133 7.60621 7.62433 7.73691 8.58831 9.02604 9.54164 11.06507 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.016216 B = 0.002881 C = 0.002539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.289258 B = 9716.877297 C =11023.828486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.147 3.853 3 C -0.316 4.316 4 C 0.419 3.581 5 O -0.448 6.448 6 C -0.274 4.274 7 C 0.243 3.757 8 O -0.263 6.263 9 C 0.033 3.967 10 C 0.003 3.997 11 N -0.447 5.447 12 C 0.130 3.870 13 C -0.508 4.508 14 H 0.081 0.919 15 C 0.069 3.931 16 N -0.899 5.899 17 Si 0.874 3.126 18 H -0.276 1.276 19 H -0.267 1.267 20 H -0.284 1.284 21 C -0.003 4.003 22 C -0.272 4.272 23 C 0.214 3.786 24 O -0.489 6.489 25 C -0.217 4.217 26 C 0.198 3.802 27 O -0.221 6.221 28 H 0.085 0.915 29 H 0.099 0.901 30 H 0.099 0.901 31 H 0.158 0.842 32 H 0.113 0.887 33 H 0.090 0.910 34 H 0.077 0.923 35 H 0.031 0.969 36 H 0.000 1.000 37 H 0.264 0.736 38 H 0.078 0.922 39 H 0.088 0.912 40 H 0.153 0.847 41 H 0.402 0.598 42 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.218 -13.508 10.043 32.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.100 3.900 3 C -0.336 4.336 4 C 0.303 3.697 5 O -0.328 6.328 6 C -0.277 4.277 7 C 0.193 3.807 8 O -0.172 6.172 9 C -0.024 4.024 10 C -0.126 4.126 11 N -0.171 5.171 12 C 0.003 3.997 13 C -0.547 4.547 14 H 0.099 0.901 15 C -0.133 4.133 16 N -0.538 5.538 17 Si 0.701 3.299 18 H -0.202 1.202 19 H -0.192 1.192 20 H -0.210 1.210 21 C -0.132 4.132 22 C -0.291 4.291 23 C 0.169 3.831 24 O -0.301 6.301 25 C -0.236 4.236 26 C 0.153 3.847 27 O -0.126 6.126 28 H 0.104 0.896 29 H 0.117 0.883 30 H 0.117 0.883 31 H 0.176 0.824 32 H 0.131 0.869 33 H 0.108 0.892 34 H 0.095 0.905 35 H 0.049 0.951 36 H 0.018 0.982 37 H 0.074 0.926 38 H 0.096 0.904 39 H 0.106 0.894 40 H 0.170 0.830 41 H 0.260 0.740 42 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -26.304 -13.102 9.500 30.884 hybrid contribution -0.619 1.332 0.015 1.469 sum -26.923 -11.769 9.515 30.885 Atomic orbital electron populations 1.21004 0.85420 1.05250 1.04953 1.22217 0.94537 0.82698 0.90580 1.22617 0.96729 0.98607 1.15683 1.18335 0.88554 0.87676 0.75156 1.90811 1.70567 1.32546 1.38917 1.20150 0.92335 0.95782 1.19417 1.18429 0.89236 0.86104 0.86904 1.86434 1.19629 1.27345 1.83833 1.24745 0.75976 1.01239 1.00406 1.24082 0.92262 0.96119 1.00103 1.68997 1.18832 1.21146 1.08143 1.20760 0.96830 0.87823 0.94324 1.20919 1.07697 0.98151 1.27890 0.90091 1.24904 0.94776 0.98664 0.94958 1.69892 1.18841 1.33175 1.31842 0.86877 0.78995 0.84997 0.79036 1.20175 1.19152 1.20982 1.24318 0.92360 1.01410 0.95136 1.21625 1.02288 0.90971 1.14195 1.17784 0.88654 0.84662 0.92024 1.84758 1.79658 1.31617 1.34077 1.20339 0.93696 0.95762 1.13826 1.18494 0.79192 0.92984 0.94073 1.83008 1.18998 1.32047 1.78587 0.89560 0.88281 0.88251 0.82417 0.86904 0.89211 0.90519 0.95079 0.98199 0.92588 0.90420 0.89380 0.82972 0.73992 0.83429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.36 10.08 36.01 0.36 0.00 16 2 C 0.15 1.17 6.92 -35.66 -0.25 0.92 16 3 C -0.32 -3.29 9.60 -39.43 -0.38 -3.67 16 4 C 0.42 6.21 6.99 -34.46 -0.24 5.97 16 5 O -0.45 -8.37 16.27 -15.66 -0.25 -8.63 16 6 C -0.27 -3.78 5.90 -104.69 -0.62 -4.40 16 7 C 0.24 3.50 6.69 -38.89 -0.26 3.24 16 8 O -0.26 -4.42 8.51 -39.41 -0.34 -4.75 16 9 C 0.03 0.52 4.01 -26.20 -0.11 0.41 16 10 C 0.00 0.06 7.52 -7.54 -0.06 0.00 16 11 N -0.45 -9.56 6.32 -246.11 -1.55 -11.11 16 12 C 0.13 3.24 3.64 -4.98 -0.02 3.22 16 13 C -0.51 -14.87 9.94 -34.44 -0.34 -15.21 16 14 H 0.08 2.58 8.06 -52.48 -0.42 2.16 16 15 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 16 N -0.90 -28.00 13.96 55.43 0.77 -27.23 16 17 Si 0.87 22.00 27.47 -169.99 -4.67 17.33 16 18 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 19 H -0.27 -6.48 6.54 56.52 0.37 -6.11 16 20 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 21 C 0.00 -0.06 7.55 -7.54 -0.06 -0.11 16 22 C -0.27 -3.23 8.95 -39.26 -0.35 -3.58 16 23 C 0.21 2.13 6.69 -39.13 -0.26 1.87 16 24 O -0.49 -3.94 13.47 -18.94 -0.26 -4.19 16 25 C -0.22 -2.04 9.93 -39.30 -0.39 -2.43 16 26 C 0.20 2.18 6.77 -38.54 -0.26 1.92 16 27 O -0.22 -2.04 9.66 5.38 0.05 -1.99 16 28 H 0.09 0.20 8.12 -51.93 -0.42 -0.22 16 29 H 0.10 0.18 8.14 -51.93 -0.42 -0.24 16 30 H 0.10 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.16 1.34 8.05 -52.48 -0.42 0.92 16 32 H 0.11 1.50 6.01 -51.93 -0.31 1.19 16 33 H 0.09 1.40 8.14 -51.93 -0.42 0.97 16 34 H 0.08 1.41 7.91 -51.93 -0.41 1.00 16 35 H 0.03 0.78 7.14 -51.93 -0.37 0.41 16 36 H 0.00 0.01 6.73 -51.93 -0.35 -0.34 16 37 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 38 H 0.08 1.55 7.42 -51.93 -0.39 1.16 16 39 H 0.09 1.58 8.14 -51.93 -0.42 1.16 16 40 H 0.15 1.71 5.92 -52.49 -0.31 1.40 16 41 H 0.40 1.11 9.06 45.56 0.41 1.52 16 42 H 0.15 1.04 8.06 -52.48 -0.42 0.62 16 LS Contribution 356.39 15.07 5.37 5.37 Total: -1.00 -37.01 356.39 -8.47 -45.48 By element: Atomic # 1 Polarization: 3.90 SS G_CDS: -4.27 Total: -0.37 kcal Atomic # 6 Polarization: -6.60 SS G_CDS: -3.32 Total: -9.92 kcal Atomic # 7 Polarization: -37.56 SS G_CDS: -0.78 Total: -38.34 kcal Atomic # 8 Polarization: -18.76 SS G_CDS: -0.79 Total: -19.56 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.67 Total: 17.33 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -37.01 -8.47 -45.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234821602.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.087 kcal (2) G-P(sol) polarization free energy of solvation -37.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds