Wall clock time and date at job start Tue Mar 31 2020 16:14:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34403 * 118.58437 * 2 1 4 4 C 1.42157 * 119.61714 * 180.02562 * 3 2 1 5 5 O 1.21972 * 121.38792 * 180.02562 * 4 3 2 6 6 C 1.47153 * 117.22922 * 359.80476 * 4 3 2 7 7 C 1.40082 * 121.44017 * 179.70523 * 6 4 3 8 8 O 1.35703 * 120.26926 * 0.45932 * 7 6 4 9 9 C 1.42901 * 116.99968 * 173.68214 * 8 7 6 10 10 C 1.53516 * 114.17060 * 201.78714 * 9 8 7 11 11 N 1.47479 * 87.93275 * 220.33181 * 10 9 8 12 12 C 1.46896 * 111.00113 * 138.70352 * 11 10 9 13 13 C 1.50696 * 109.47468 * 170.00146 * 12 11 10 14 14 H 1.08009 * 119.99796 * 359.97438 * 13 12 11 15 15 C 1.37872 * 120.00405 * 180.02562 * 13 12 11 16 16 N 1.31517 * 120.00087 * 179.97438 * 15 13 12 17 17 Si 1.86801 * 119.99984 * 359.97438 * 15 13 12 18 18 H 1.48500 * 109.47184 * 270.00583 * 17 15 13 19 19 H 1.48507 * 109.46806 * 30.00217 * 17 15 13 20 20 H 1.48494 * 109.47340 * 149.99935 * 17 15 13 21 21 C 1.47484 * 87.83510 * 27.01248 * 11 10 9 22 22 C 1.38230 * 119.46337 * 180.19473 * 7 6 4 23 23 C 1.39099 * 120.17117 * 0.26791 * 22 7 6 24 24 O 1.35744 * 119.66596 * 179.97438 * 23 22 7 25 25 C 1.38598 * 120.67470 * 0.02562 * 23 22 7 26 26 C 1.38638 * 120.02115 * 359.95689 * 25 23 22 27 27 O 1.33781 * 118.58906 * 180.02562 * 2 1 3 28 28 H 1.09001 * 109.46890 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47176 * 299.97660 * 1 2 3 30 30 H 1.08997 * 109.47384 * 59.97531 * 1 2 3 31 31 H 1.08007 * 120.19047 * 0.02562 * 3 2 1 32 32 H 1.08998 * 113.38532 * 334.86878 * 9 8 7 33 33 H 1.08998 * 113.47182 * 105.56653 * 10 9 8 34 34 H 1.08997 * 113.53142 * 335.10922 * 10 9 8 35 35 H 1.08997 * 109.46880 * 50.00044 * 12 11 10 36 36 H 1.09000 * 109.47209 * 290.00186 * 12 11 10 37 37 H 0.97005 * 120.00031 * 180.02562 * 16 15 13 38 38 H 1.08995 * 113.48069 * 87.75497 * 21 11 10 39 39 H 1.09001 * 113.47234 * 218.22536 * 21 11 10 40 40 H 1.07996 * 119.91715 * 180.25279 * 22 7 6 41 41 H 0.96701 * 114.00007 * 89.99873 * 24 23 22 42 42 H 1.08004 * 119.99385 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1501 1.1802 0.0000 4 6 3.5714 1.2058 -0.0006 5 8 4.1878 2.2583 -0.0001 6 6 4.2682 -0.0903 0.0034 7 6 5.6668 -0.1680 -0.0030 8 8 6.4148 0.9643 -0.0036 9 6 7.8289 0.8077 0.1299 10 6 8.5543 2.0597 0.6430 11 7 9.6275 1.7698 -0.3262 12 6 10.0990 3.0013 -0.9735 13 6 11.3469 2.7066 -1.7652 14 1 11.7498 1.7047 -1.7851 15 6 11.9750 3.7162 -2.4632 16 7 13.0644 3.4591 -3.1538 17 14 11.2786 5.4492 -2.4282 18 1 10.3124 5.6171 -3.5434 19 1 10.5862 5.6783 -1.1346 20 1 12.3835 6.4298 -2.5786 21 6 8.6167 1.0895 -1.1572 22 6 6.2790 -1.4073 -0.0031 23 6 5.5103 -2.5667 -0.0025 24 8 6.1222 -3.7784 -0.0032 25 6 4.1261 -2.4973 -0.0024 26 6 3.4934 -1.2637 -0.0020 27 8 2.1472 -1.1747 -0.0005 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5135 0.8902 30 1 -0.3634 0.5142 -0.8897 31 1 1.5902 2.1038 0.0004 32 1 8.1163 -0.1136 0.6364 33 1 8.8745 1.9807 1.6819 34 1 8.0209 2.9873 0.4357 35 1 10.3197 3.7500 -0.2127 36 1 9.3255 3.3795 -1.6419 37 1 13.5065 4.1694 -3.6446 38 1 8.0993 1.7577 -1.8455 39 1 8.9899 0.1884 -1.6439 40 1 7.3568 -1.4758 -0.0039 41 1 6.3002 -4.1296 0.8801 42 1 3.5400 -3.4045 -0.0024 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001234821602.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:14:14 Heat of formation + Delta-G solvation = -75.814685 kcal Electronic energy + Delta-G solvation = -27753.211483 eV Core-core repulsion = 23665.800383 eV Total energy + Delta-G solvation = -4087.411100 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 1.86 seconds Orbital eigenvalues (eV) -43.04387 -41.77566 -40.37409 -39.71070 -38.85010 -36.75004 -35.02316 -34.66998 -32.06882 -31.86461 -30.91499 -29.12778 -27.50101 -27.02705 -25.43873 -24.38207 -23.61092 -22.79177 -21.56506 -20.69149 -19.68901 -19.06152 -18.79112 -18.25983 -18.19019 -17.62174 -17.02620 -16.70942 -16.60359 -16.40020 -15.98403 -15.79305 -15.56428 -15.35260 -15.11680 -14.77562 -14.67702 -14.28970 -14.10720 -14.00689 -13.94320 -13.77560 -13.52279 -13.15675 -12.84266 -12.76707 -12.65361 -12.49101 -11.98563 -11.86881 -11.76326 -11.58055 -11.40577 -10.86172 -10.79415 -10.35974 -9.93129 -9.87073 -9.33207 -8.35835 -6.40163 -0.59588 -0.32697 0.36386 1.09915 1.29468 1.30038 1.41209 1.70169 1.81478 2.27498 2.53580 2.90271 2.95596 3.07762 3.13701 3.17264 3.43093 3.56354 3.63113 3.71726 3.90982 3.94764 4.10632 4.22840 4.27057 4.45389 4.48393 4.56467 4.60204 4.62740 4.64000 4.69162 4.69455 4.75636 4.80414 5.02432 5.08666 5.19247 5.23935 5.32331 5.55254 5.80576 6.06162 6.15503 6.40262 6.62445 6.65080 6.70337 7.22926 8.80832 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.016216 B = 0.002881 C = 0.002539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.289258 B = 9716.877297 C =11023.828486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.177 3.823 3 C -0.350 4.350 4 C 0.404 3.596 5 O -0.513 6.513 6 C -0.300 4.300 7 C 0.213 3.787 8 O -0.288 6.288 9 C 0.060 3.940 10 C 0.002 3.998 11 N -0.466 5.466 12 C 0.140 3.860 13 C -0.519 4.519 14 H 0.039 0.961 15 C 0.011 3.989 16 N -0.943 5.943 17 Si 0.944 3.056 18 H -0.269 1.269 19 H -0.252 1.252 20 H -0.274 1.274 21 C -0.010 4.010 22 C -0.275 4.275 23 C 0.229 3.771 24 O -0.491 6.491 25 C -0.200 4.200 26 C 0.198 3.802 27 O -0.211 6.211 28 H 0.104 0.896 29 H 0.121 0.879 30 H 0.118 0.882 31 H 0.171 0.829 32 H 0.143 0.857 33 H 0.115 0.885 34 H 0.066 0.934 35 H 0.033 0.967 36 H -0.002 1.002 37 H 0.269 0.731 38 H 0.060 0.940 39 H 0.091 0.909 40 H 0.157 0.843 41 H 0.427 0.573 42 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.611 -15.315 11.192 36.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.129 3.871 3 C -0.369 4.369 4 C 0.293 3.707 5 O -0.398 6.398 6 C -0.303 4.303 7 C 0.165 3.835 8 O -0.198 6.198 9 C 0.003 3.997 10 C -0.126 4.126 11 N -0.190 5.190 12 C 0.012 3.988 13 C -0.558 4.558 14 H 0.057 0.943 15 C -0.187 4.187 16 N -0.583 5.583 17 Si 0.767 3.233 18 H -0.194 1.194 19 H -0.176 1.176 20 H -0.199 1.199 21 C -0.140 4.140 22 C -0.294 4.294 23 C 0.183 3.817 24 O -0.307 6.307 25 C -0.219 4.219 26 C 0.152 3.848 27 O -0.115 6.115 28 H 0.123 0.877 29 H 0.139 0.861 30 H 0.136 0.864 31 H 0.189 0.811 32 H 0.160 0.840 33 H 0.133 0.867 34 H 0.084 0.916 35 H 0.051 0.949 36 H 0.016 0.984 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.110 0.890 40 H 0.174 0.826 41 H 0.290 0.710 42 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -29.729 -14.974 10.683 34.959 hybrid contribution 0.329 1.583 -0.340 1.652 sum -29.400 -13.391 10.343 33.921 Atomic orbital electron populations 1.21292 0.81255 1.07049 1.06773 1.23042 0.96455 0.81392 0.86205 1.22558 0.94704 1.00483 1.19187 1.19009 0.90495 0.87409 0.73763 1.90767 1.71956 1.34220 1.42903 1.20371 0.92592 0.96590 1.20735 1.18692 0.89561 0.86219 0.89002 1.86398 1.19506 1.29107 1.84813 1.24463 0.76082 1.01377 0.97745 1.24119 0.91268 0.96775 1.00482 1.68865 1.21039 1.19692 1.09370 1.20515 0.94906 0.89525 0.93877 1.21132 1.09329 0.96498 1.28805 0.94300 1.25826 0.94994 1.03504 0.94344 1.70033 1.20422 1.34950 1.32936 0.85757 0.78597 0.79081 0.79826 1.19418 1.17580 1.19886 1.24339 0.92405 1.00890 0.96338 1.21717 1.02678 0.90816 1.14195 1.17752 0.88836 0.84731 0.90403 1.84713 1.79377 1.30298 1.36327 1.20669 0.93637 0.96143 1.11469 1.18620 0.79798 0.92600 0.93766 1.83086 1.18033 1.32665 1.77746 0.87744 0.86103 0.86370 0.81115 0.84008 0.86735 0.91570 0.94892 0.98430 0.92175 0.92204 0.89033 0.82595 0.70983 0.80174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.26 10.08 71.24 0.72 0.46 16 2 C 0.18 2.35 6.92 24.81 0.17 2.53 16 3 C -0.35 -7.14 9.60 22.37 0.21 -6.93 16 4 C 0.40 12.55 6.99 25.59 0.18 12.73 16 5 O -0.51 -20.68 16.27 14.47 0.24 -20.45 16 6 C -0.30 -8.34 5.90 -19.91 -0.12 -8.45 16 7 C 0.21 6.24 6.69 22.72 0.15 6.39 16 8 O -0.29 -10.05 8.51 -70.54 -0.60 -10.65 16 9 C 0.06 1.91 4.01 30.94 0.12 2.03 16 10 C 0.00 0.08 7.52 83.58 0.63 0.71 16 11 N -0.47 -20.40 6.32 -932.95 -5.89 -26.29 16 12 C 0.14 7.13 3.64 85.56 0.31 7.44 16 13 C -0.52 -31.55 9.94 25.60 0.25 -31.29 16 14 H 0.04 2.61 8.06 -2.91 -0.02 2.59 16 15 C 0.01 0.68 5.47 84.65 0.46 1.14 16 16 N -0.94 -60.46 13.96 21.45 0.30 -60.16 16 17 Si 0.94 45.98 27.47 68.60 1.88 47.86 16 18 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 19 H -0.25 -11.58 6.54 99.48 0.65 -10.93 16 20 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 21 C -0.01 -0.41 7.55 83.57 0.63 0.22 16 22 C -0.27 -6.21 8.95 22.47 0.20 -6.01 16 23 C 0.23 3.90 6.69 22.56 0.15 4.05 16 24 O -0.49 -6.10 13.47 -90.68 -1.22 -7.32 16 25 C -0.20 -3.08 9.93 22.45 0.22 -2.86 16 26 C 0.20 3.95 6.77 22.95 0.16 4.11 16 27 O -0.21 -3.24 9.66 -3.67 -0.04 -3.28 16 28 H 0.10 -0.04 8.12 -2.39 -0.02 -0.06 16 29 H 0.12 -0.09 8.14 -2.39 -0.02 -0.11 16 30 H 0.12 -0.01 8.14 -2.39 -0.02 -0.03 16 31 H 0.17 2.86 8.05 -2.91 -0.02 2.84 16 32 H 0.14 3.64 6.01 -2.39 -0.01 3.62 16 33 H 0.11 3.47 8.14 -2.39 -0.02 3.45 16 34 H 0.07 2.51 7.91 -2.39 -0.02 2.49 16 35 H 0.03 1.66 7.14 -2.39 -0.02 1.64 16 36 H 0.00 -0.11 6.73 -2.39 -0.02 -0.12 16 37 H 0.27 15.99 8.31 -92.70 -0.77 15.22 16 38 H 0.06 2.53 7.42 -2.39 -0.02 2.51 16 39 H 0.09 3.41 8.14 -2.39 -0.02 3.39 16 40 H 0.16 3.29 5.92 -2.91 -0.02 3.28 16 41 H 0.43 0.61 9.06 -74.06 -0.67 -0.06 16 42 H 0.18 1.61 8.06 -2.91 -0.02 1.58 16 Total: -1.00 -86.29 356.39 -0.52 -86.81 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: 0.35 Total: 7.20 kcal Atomic # 6 Polarization: -18.18 SS G_CDS: 4.46 Total: -13.72 kcal Atomic # 7 Polarization: -80.86 SS G_CDS: -5.59 Total: -86.45 kcal Atomic # 8 Polarization: -40.07 SS G_CDS: -1.62 Total: -41.69 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 1.88 Total: 47.86 kcal Total: -86.29 -0.52 -86.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234821602.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.994 kcal (2) G-P(sol) polarization free energy of solvation -86.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.86 seconds