Wall clock time and date at job start Tue Mar 31 2020 16:53:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47114 * 2 1 4 4 H 1.08995 * 109.47189 * 304.99618 * 3 2 1 5 5 C 1.50699 * 109.46941 * 184.99461 * 3 2 1 6 6 H 1.08001 * 120.00295 * 245.31670 * 5 3 2 7 7 C 1.37872 * 119.99870 * 65.31980 * 5 3 2 8 8 N 1.31519 * 120.00239 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 120.00129 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.47170 * 60.00236 * 9 7 5 11 11 H 1.48507 * 109.47327 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47252 * 299.99821 * 9 7 5 13 13 N 1.46904 * 109.47109 * 65.00051 * 3 2 1 14 14 C 1.48189 * 110.99998 * 170.07803 * 13 3 2 15 15 C 1.52801 * 85.79414 * 223.16207 * 14 13 3 16 16 C 1.48182 * 111.00260 * 70.44158 * 13 3 2 17 17 C 1.53311 * 116.63474 * 264.52323 * 15 14 13 18 18 H 1.09007 * 108.94602 * 112.37508 * 17 15 14 19 19 C 1.50700 * 108.87377 * 353.64223 * 17 15 14 20 20 O 1.20829 * 119.99602 * 272.66316 * 19 17 15 21 21 O 1.34228 * 120.00316 * 92.66066 * 19 17 15 22 22 C 1.45198 * 117.00264 * 180.02562 * 21 19 17 23 23 C 1.53290 * 111.98616 * 233.02842 * 17 15 14 24 24 C 1.55193 * 108.72193 * 330.31298 * 23 17 15 25 25 S 1.82508 * 115.02167 * 139.62644 * 15 14 13 26 26 O 1.42101 * 109.65028 * 37.29683 * 25 15 14 27 27 O 1.42100 * 109.65192 * 263.41917 * 25 15 14 28 28 H 1.09004 * 109.47119 * 179.97438 * 1 2 3 29 29 H 1.08991 * 109.47547 * 300.00105 * 1 2 3 30 30 H 1.09004 * 109.46556 * 60.00149 * 1 2 3 31 31 H 1.08997 * 109.47130 * 239.99862 * 2 1 3 32 32 H 1.09004 * 109.46556 * 119.99851 * 2 1 3 33 33 H 0.96999 * 120.00254 * 180.02562 * 8 7 5 34 34 H 1.08993 * 113.81921 * 108.94540 * 14 13 3 35 35 H 1.08996 * 113.81720 * 337.37920 * 14 13 3 36 36 H 1.08999 * 113.81908 * 22.61404 * 16 13 3 37 37 H 1.09002 * 113.81866 * 251.05117 * 16 13 3 38 38 H 1.08993 * 109.47292 * 180.02562 * 22 21 19 39 39 H 1.09005 * 109.46859 * 299.99987 * 22 21 19 40 40 H 1.08998 * 109.46705 * 59.99875 * 22 21 19 41 41 H 1.09000 * 109.64546 * 210.44620 * 23 17 15 42 42 H 1.09005 * 109.52826 * 90.10287 * 23 17 15 43 43 H 1.09004 * 111.06032 * 283.43222 * 24 23 17 44 44 H 1.08993 * 111.06574 * 159.43828 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 -0.8418 5 6 3.5419 1.4442 -0.1237 6 1 4.1504 1.8106 0.6899 7 6 4.1392 0.9781 -1.2756 8 7 3.3984 0.5315 -2.2662 9 14 6.0009 0.9809 -1.4293 10 1 6.5876 0.1396 -0.3553 11 1 6.3891 0.4345 -2.7545 12 1 6.5062 2.3714 -1.3006 13 7 1.6514 2.0992 1.2553 14 6 2.3238 3.4120 1.3981 15 6 2.5615 3.0056 2.8518 16 6 2.4177 1.5530 2.3999 17 6 1.5415 3.5065 3.8810 18 1 0.9834 2.6546 4.2696 19 6 0.5842 4.4498 3.1994 20 8 0.8516 5.6251 3.1149 21 8 -0.5654 3.9845 2.6860 22 6 -1.4390 4.9500 2.0434 23 6 2.2154 4.2363 5.0485 24 6 3.6327 3.6395 5.2575 25 16 4.2021 3.4472 3.5184 26 8 4.6027 4.7099 3.0044 27 8 5.0739 2.3292 3.4219 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3632 0.5138 -0.8901 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 3.8186 0.2033 -3.0765 34 1 1.6543 4.2643 1.2832 35 1 3.2380 3.5044 0.8118 36 1 3.3601 1.0850 2.1155 37 1 1.8222 0.9387 3.0753 38 1 -2.3305 4.4437 1.6736 39 1 -1.7284 5.7144 2.7645 40 1 -0.9138 5.4168 1.2101 41 1 1.6242 4.1026 5.9544 42 1 2.2955 5.2984 4.8168 43 1 3.5810 2.6745 5.7618 44 1 4.2724 4.3317 5.8049 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255173824.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:53:46 Heat of formation + Delta-G solvation = -105.471489 kcal Electronic energy + Delta-G solvation = -29259.865268 eV Core-core repulsion = 25306.612105 eV Total energy + Delta-G solvation = -3953.253164 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.133 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.07999 -39.34644 -36.99929 -36.58894 -35.83874 -35.35890 -33.67900 -31.66560 -29.64549 -28.05654 -26.86672 -25.89693 -25.52846 -23.21175 -22.72347 -21.24048 -20.02612 -18.94029 -18.40790 -17.70596 -16.89113 -16.67138 -16.47726 -16.30828 -16.14394 -15.56670 -14.69641 -14.40984 -14.09876 -14.04556 -13.64672 -13.55318 -13.16588 -13.04287 -12.81414 -12.55240 -12.36005 -12.20943 -12.00284 -11.83889 -11.76611 -11.68653 -11.45346 -11.26242 -11.09791 -10.91099 -10.71800 -10.64050 -10.62267 -10.39276 -10.29336 -10.27412 -9.86158 -9.64854 -9.54799 -9.20997 -8.43869 -7.70693 -6.11157 -4.23621 0.14373 2.18117 2.60271 2.73166 3.30760 3.33479 3.41056 3.65485 3.87053 4.14030 4.29970 4.36826 4.49486 4.56727 4.67900 4.75372 5.06468 5.15449 5.17459 5.19149 5.27079 5.40646 5.48897 5.59023 5.64175 5.74368 5.96962 6.17576 6.23682 6.25606 6.36433 6.40128 6.47771 6.55042 6.60045 7.02852 7.10715 7.37993 7.59291 7.70923 7.81007 7.88964 7.93361 8.24666 8.83623 9.45564 10.91531 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.011687 B = 0.006425 C = 0.004779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2395.161971 B = 4356.634441 C = 5857.071522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.103 4.103 3 C 0.178 3.822 4 H 0.049 0.951 5 C -0.561 4.561 6 H 0.059 0.941 7 C 0.078 3.922 8 N -0.878 5.878 9 Si 0.879 3.121 10 H -0.271 1.271 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.459 5.459 14 C 0.049 3.951 15 C -0.547 4.547 16 C 0.050 3.950 17 C -0.049 4.049 18 H 0.125 0.875 19 C 0.484 3.516 20 O -0.509 6.509 21 O -0.335 6.335 22 C 0.036 3.964 23 C -0.117 4.117 24 C -0.584 4.584 25 S 2.376 3.624 26 O -0.923 6.923 27 O -0.922 6.922 28 H 0.026 0.974 29 H 0.050 0.950 30 H 0.039 0.961 31 H 0.084 0.916 32 H 0.034 0.966 33 H 0.264 0.736 34 H 0.082 0.918 35 H 0.105 0.895 36 H 0.115 0.885 37 H 0.090 0.910 38 H 0.100 0.900 39 H 0.058 0.942 40 H 0.064 0.936 41 H 0.102 0.898 42 H 0.104 0.896 43 H 0.139 0.861 44 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.006 4.703 14.261 16.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.142 4.142 3 C 0.071 3.929 4 H 0.067 0.933 5 C -0.599 4.599 6 H 0.077 0.923 7 C -0.127 4.127 8 N -0.515 5.515 9 Si 0.706 3.294 10 H -0.196 1.196 11 H -0.210 1.210 12 H -0.199 1.199 13 N -0.182 5.182 14 C -0.081 4.081 15 C -0.638 4.638 16 C -0.080 4.080 17 C -0.070 4.070 18 H 0.143 0.857 19 C 0.327 3.673 20 O -0.397 6.397 21 O -0.250 6.250 22 C -0.058 4.058 23 C -0.156 4.156 24 C -0.713 4.713 25 S 2.559 3.441 26 O -0.919 6.919 27 O -0.918 6.918 28 H 0.045 0.955 29 H 0.069 0.931 30 H 0.059 0.941 31 H 0.102 0.898 32 H 0.053 0.947 33 H 0.074 0.926 34 H 0.101 0.899 35 H 0.123 0.877 36 H 0.133 0.867 37 H 0.108 0.892 38 H 0.119 0.881 39 H 0.076 0.924 40 H 0.082 0.918 41 H 0.120 0.880 42 H 0.122 0.878 43 H 0.157 0.843 44 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -6.763 5.041 13.563 15.972 hybrid contribution 1.065 0.064 0.015 1.067 sum -5.698 5.105 13.578 15.585 Atomic orbital electron populations 1.21726 0.98588 0.98597 1.00792 1.21462 0.92442 0.98708 1.01572 1.19780 0.93628 0.91986 0.87543 0.93308 1.21588 0.92214 1.44351 1.01750 0.92295 1.24847 0.97988 0.94327 0.95493 1.69898 1.35200 1.40813 1.05558 0.86833 0.85979 0.79034 0.77542 1.19607 1.21032 1.19913 1.69034 1.43462 1.00805 1.04896 1.23558 1.01299 0.96546 0.86663 1.31178 1.17464 1.09873 1.05274 1.23684 1.01497 0.88031 0.94797 1.20830 0.94151 0.98822 0.93183 0.85721 1.22989 0.80931 0.87732 0.75656 1.90680 1.74975 1.18303 1.55783 1.86592 1.29945 1.41452 1.67059 1.23251 0.92985 0.92269 0.97250 1.22126 0.93428 1.01996 0.98023 1.30595 1.05995 1.10472 1.24204 1.09797 0.78729 0.75995 0.79609 1.93622 1.80375 1.41300 1.76648 1.93626 1.61170 1.52182 1.84861 0.95485 0.93120 0.94144 0.89785 0.94749 0.92605 0.89938 0.87733 0.86698 0.89168 0.88140 0.92374 0.91757 0.87967 0.87780 0.84256 0.84536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.66 9.80 37.16 0.36 -2.30 16 2 C -0.10 -2.29 5.29 -26.73 -0.14 -2.43 16 3 C 0.18 4.14 1.91 -68.87 -0.13 4.00 16 4 H 0.05 1.28 8.14 -51.93 -0.42 0.86 16 5 C -0.56 -14.35 6.10 -34.44 -0.21 -14.56 16 6 H 0.06 1.50 5.37 -52.49 -0.28 1.22 16 7 C 0.08 2.08 5.30 -17.82 -0.09 1.99 16 8 N -0.88 -24.05 11.71 55.43 0.65 -23.40 16 9 Si 0.88 21.24 29.54 -169.99 -5.02 16.21 16 10 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 13 N -0.46 -8.90 5.71 -237.84 -1.36 -10.26 16 14 C 0.05 0.94 6.35 -3.22 -0.02 0.92 16 15 C -0.55 -8.57 1.33 -90.80 -0.12 -8.69 16 16 C 0.05 0.85 5.85 -3.22 -0.02 0.84 16 17 C -0.05 -0.61 2.94 -91.46 -0.27 -0.88 16 18 H 0.12 1.23 7.73 -51.93 -0.40 0.82 16 19 C 0.48 6.99 4.61 36.01 0.17 7.16 16 20 O -0.51 -8.35 15.21 -18.75 -0.29 -8.64 16 21 O -0.34 -4.68 10.56 -39.25 -0.41 -5.10 16 22 C 0.04 0.41 10.56 101.05 1.07 1.47 16 23 C -0.12 -1.16 5.82 -25.42 -0.15 -1.31 16 24 C -0.58 -5.65 7.47 38.32 0.29 -5.36 16 25 S 2.38 37.39 5.70 -107.50 -0.61 36.78 16 26 O -0.92 -17.51 18.00 -57.69 -1.04 -18.54 16 27 O -0.92 -17.26 17.16 -57.69 -0.99 -18.25 16 28 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.05 0.92 7.75 -51.93 -0.40 0.52 16 30 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.08 2.11 6.41 -51.93 -0.33 1.77 16 32 H 0.03 0.73 7.41 -51.93 -0.38 0.35 16 33 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 34 H 0.08 1.55 5.98 -51.93 -0.31 1.24 16 35 H 0.10 2.26 6.06 -51.93 -0.31 1.94 16 36 H 0.12 2.28 5.15 -51.93 -0.27 2.01 16 37 H 0.09 1.29 7.86 -51.93 -0.41 0.88 16 38 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.06 0.57 8.13 -51.93 -0.42 0.15 16 40 H 0.06 0.77 8.13 -51.93 -0.42 0.35 16 41 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.10 1.16 6.87 -51.93 -0.36 0.80 16 43 H 0.14 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.14 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 356.39 15.07 5.37 5.37 Total: -1.00 -32.52 356.39 -9.37 -41.89 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -6.40 Total: 3.09 kcal Atomic # 6 Polarization: -19.88 SS G_CDS: 0.73 Total: -19.15 kcal Atomic # 7 Polarization: -32.95 SS G_CDS: -0.71 Total: -33.66 kcal Atomic # 8 Polarization: -47.81 SS G_CDS: -2.73 Total: -50.54 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: 37.39 SS G_CDS: -0.61 Total: 36.78 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.52 -9.37 -41.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255173824.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.581 kcal (2) G-P(sol) polarization free energy of solvation -32.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds