Wall clock time and date at job start Tue Mar 31 2020 16:53:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47114 * 2 1 4 4 H 1.08995 * 109.47189 * 304.99618 * 3 2 1 5 5 C 1.50699 * 109.46941 * 184.99461 * 3 2 1 6 6 H 1.08001 * 120.00295 * 245.31670 * 5 3 2 7 7 C 1.37872 * 119.99870 * 65.31980 * 5 3 2 8 8 N 1.31519 * 120.00239 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 120.00129 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.47170 * 60.00236 * 9 7 5 11 11 H 1.48507 * 109.47327 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47252 * 299.99821 * 9 7 5 13 13 N 1.46904 * 109.47109 * 65.00051 * 3 2 1 14 14 C 1.48189 * 110.99998 * 170.07803 * 13 3 2 15 15 C 1.52801 * 85.79414 * 223.16207 * 14 13 3 16 16 C 1.48182 * 111.00260 * 70.44158 * 13 3 2 17 17 C 1.53311 * 116.63474 * 264.52323 * 15 14 13 18 18 H 1.09007 * 108.94602 * 112.37508 * 17 15 14 19 19 C 1.50700 * 108.87377 * 353.64223 * 17 15 14 20 20 O 1.20829 * 119.99602 * 272.66316 * 19 17 15 21 21 O 1.34228 * 120.00316 * 92.66066 * 19 17 15 22 22 C 1.45198 * 117.00264 * 180.02562 * 21 19 17 23 23 C 1.53290 * 111.98616 * 233.02842 * 17 15 14 24 24 C 1.55193 * 108.72193 * 330.31298 * 23 17 15 25 25 S 1.82508 * 115.02167 * 139.62644 * 15 14 13 26 26 O 1.42101 * 109.65028 * 37.29683 * 25 15 14 27 27 O 1.42100 * 109.65192 * 263.41917 * 25 15 14 28 28 H 1.09004 * 109.47119 * 179.97438 * 1 2 3 29 29 H 1.08991 * 109.47547 * 300.00105 * 1 2 3 30 30 H 1.09004 * 109.46556 * 60.00149 * 1 2 3 31 31 H 1.08997 * 109.47130 * 239.99862 * 2 1 3 32 32 H 1.09004 * 109.46556 * 119.99851 * 2 1 3 33 33 H 0.96999 * 120.00254 * 180.02562 * 8 7 5 34 34 H 1.08993 * 113.81921 * 108.94540 * 14 13 3 35 35 H 1.08996 * 113.81720 * 337.37920 * 14 13 3 36 36 H 1.08999 * 113.81908 * 22.61404 * 16 13 3 37 37 H 1.09002 * 113.81866 * 251.05117 * 16 13 3 38 38 H 1.08993 * 109.47292 * 180.02562 * 22 21 19 39 39 H 1.09005 * 109.46859 * 299.99987 * 22 21 19 40 40 H 1.08998 * 109.46705 * 59.99875 * 22 21 19 41 41 H 1.09000 * 109.64546 * 210.44620 * 23 17 15 42 42 H 1.09005 * 109.52826 * 90.10287 * 23 17 15 43 43 H 1.09004 * 111.06032 * 283.43222 * 24 23 17 44 44 H 1.08993 * 111.06574 * 159.43828 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 -0.8418 5 6 3.5419 1.4442 -0.1237 6 1 4.1504 1.8106 0.6899 7 6 4.1392 0.9781 -1.2756 8 7 3.3984 0.5315 -2.2662 9 14 6.0009 0.9809 -1.4293 10 1 6.5876 0.1396 -0.3553 11 1 6.3891 0.4345 -2.7545 12 1 6.5062 2.3714 -1.3006 13 7 1.6514 2.0992 1.2553 14 6 2.3238 3.4120 1.3981 15 6 2.5615 3.0056 2.8518 16 6 2.4177 1.5530 2.3999 17 6 1.5415 3.5065 3.8810 18 1 0.9834 2.6546 4.2696 19 6 0.5842 4.4498 3.1994 20 8 0.8516 5.6251 3.1149 21 8 -0.5654 3.9845 2.6860 22 6 -1.4390 4.9500 2.0434 23 6 2.2154 4.2363 5.0485 24 6 3.6327 3.6395 5.2575 25 16 4.2021 3.4472 3.5184 26 8 4.6027 4.7099 3.0044 27 8 5.0739 2.3292 3.4219 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3632 0.5138 -0.8901 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 3.8186 0.2033 -3.0765 34 1 1.6543 4.2643 1.2832 35 1 3.2380 3.5044 0.8118 36 1 3.3601 1.0850 2.1155 37 1 1.8222 0.9387 3.0753 38 1 -2.3305 4.4437 1.6736 39 1 -1.7284 5.7144 2.7645 40 1 -0.9138 5.4168 1.2101 41 1 1.6242 4.1026 5.9544 42 1 2.2955 5.2984 4.8168 43 1 3.5810 2.6745 5.7618 44 1 4.2724 4.3317 5.8049 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255173824.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:53:45 Heat of formation + Delta-G solvation = -131.247277 kcal Electronic energy + Delta-G solvation = -29260.982990 eV Core-core repulsion = 25306.612105 eV Total energy + Delta-G solvation = -3954.370886 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.133 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.28932 -40.70067 -38.24163 -37.73857 -37.11734 -36.64789 -35.24283 -33.55099 -30.82593 -29.36915 -28.11184 -27.38534 -27.06517 -24.70520 -23.83597 -22.64201 -21.41083 -20.46190 -19.67815 -18.77334 -18.44615 -18.00541 -17.83228 -17.60114 -17.30862 -16.79477 -16.48857 -15.75213 -15.64244 -15.19106 -14.87939 -14.86966 -14.55348 -14.26767 -14.09406 -13.88558 -13.68779 -13.38908 -13.31979 -13.22604 -13.13292 -13.08283 -12.93147 -12.85108 -12.62245 -12.38974 -12.34648 -12.00704 -11.96007 -11.70037 -11.67842 -11.54753 -11.43952 -11.40153 -11.11517 -10.84807 -10.48501 -9.41735 -8.16853 -6.33041 -1.01227 1.07827 1.31567 1.32816 1.40989 1.48322 1.73963 2.33784 2.52642 2.63379 2.99642 3.08555 3.16180 3.36512 3.56122 3.62206 3.87244 4.08985 4.17850 4.33671 4.37256 4.38852 4.42935 4.55703 4.61200 4.68222 4.72431 4.76453 4.81308 4.84792 4.91595 4.95499 5.00418 5.01208 5.28151 5.42949 5.44806 5.53694 5.69454 5.92194 5.99392 6.04265 6.31722 6.74381 6.85620 7.37006 8.83877 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.011687 B = 0.006425 C = 0.004779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2395.161971 B = 4356.634441 C = 5857.071522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.098 4.098 3 C 0.186 3.814 4 H 0.008 0.992 5 C -0.561 4.561 6 H 0.054 0.946 7 C 0.034 3.966 8 N -0.902 5.902 9 Si 0.920 3.080 10 H -0.270 1.270 11 H -0.275 1.275 12 H -0.281 1.281 13 N -0.449 5.449 14 C 0.039 3.961 15 C -0.534 4.534 16 C 0.049 3.951 17 C -0.048 4.048 18 H 0.164 0.836 19 C 0.480 3.520 20 O -0.536 6.536 21 O -0.343 6.343 22 C 0.030 3.970 23 C -0.117 4.117 24 C -0.527 4.527 25 S 2.340 3.660 26 O -0.973 6.973 27 O -0.966 6.966 28 H 0.048 0.952 29 H 0.065 0.935 30 H 0.028 0.972 31 H 0.050 0.950 32 H 0.042 0.958 33 H 0.264 0.736 34 H 0.079 0.921 35 H 0.067 0.933 36 H 0.085 0.915 37 H 0.132 0.868 38 H 0.125 0.875 39 H 0.072 0.928 40 H 0.046 0.954 41 H 0.156 0.844 42 H 0.090 0.910 43 H 0.184 0.816 44 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.578 4.202 18.411 20.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.136 4.136 3 C 0.077 3.923 4 H 0.026 0.974 5 C -0.600 4.600 6 H 0.072 0.928 7 C -0.167 4.167 8 N -0.540 5.540 9 Si 0.746 3.254 10 H -0.195 1.195 11 H -0.200 1.200 12 H -0.207 1.207 13 N -0.171 5.171 14 C -0.091 4.091 15 C -0.625 4.625 16 C -0.081 4.081 17 C -0.068 4.068 18 H 0.182 0.818 19 C 0.324 3.676 20 O -0.426 6.426 21 O -0.258 6.258 22 C -0.064 4.064 23 C -0.156 4.156 24 C -0.661 4.661 25 S 2.529 3.471 26 O -0.970 6.970 27 O -0.962 6.962 28 H 0.067 0.933 29 H 0.084 0.916 30 H 0.047 0.953 31 H 0.069 0.931 32 H 0.061 0.939 33 H 0.073 0.927 34 H 0.098 0.902 35 H 0.085 0.915 36 H 0.103 0.897 37 H 0.150 0.850 38 H 0.144 0.856 39 H 0.091 0.909 40 H 0.065 0.935 41 H 0.174 0.826 42 H 0.109 0.891 43 H 0.201 0.799 44 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -8.319 4.525 17.644 20.025 hybrid contribution 1.494 0.312 -1.192 1.936 sum -6.825 4.837 16.453 18.457 Atomic orbital electron populations 1.21583 0.95844 1.00050 1.00902 1.21299 0.94804 0.97234 1.00278 1.19524 0.91867 0.92653 0.88240 0.97355 1.21921 0.93848 1.42882 1.01333 0.92810 1.25419 1.00779 0.94807 0.95731 1.69990 1.36096 1.42016 1.05871 0.86188 0.82863 0.78446 0.77862 1.19483 1.19953 1.20729 1.68946 1.43547 1.00774 1.03869 1.23343 0.99605 0.96433 0.89755 1.30936 1.19556 1.07987 1.03979 1.23684 1.00476 0.89577 0.94326 1.21079 0.93112 1.00058 0.92589 0.81818 1.23438 0.81187 0.87707 0.75274 1.90674 1.75487 1.19673 1.56763 1.86575 1.30089 1.42260 1.66919 1.23475 0.93137 0.92718 0.97036 1.22314 0.93667 1.00807 0.98793 1.30385 1.05518 1.13846 1.16325 1.10453 0.78603 0.74557 0.83456 1.93560 1.81259 1.42438 1.79709 1.93567 1.62707 1.53105 1.86867 0.93309 0.91640 0.95316 0.93093 0.93950 0.92709 0.90249 0.91515 0.89735 0.85014 0.85649 0.90922 0.93490 0.82624 0.89127 0.79870 0.81334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.68 9.80 71.98 0.71 -3.97 16 2 C -0.10 -4.37 5.29 30.59 0.16 -4.21 16 3 C 0.19 8.95 1.91 44.17 0.08 9.03 16 4 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 5 C -0.56 -30.14 6.10 25.60 0.16 -29.98 16 6 H 0.05 2.90 5.37 -2.91 -0.02 2.89 16 7 C 0.03 1.91 5.30 84.65 0.45 2.36 16 8 N -0.90 -51.52 11.71 21.45 0.25 -51.26 16 9 Si 0.92 45.14 29.54 68.60 2.03 47.17 16 10 H -0.27 -13.08 7.11 99.48 0.71 -12.38 16 11 H -0.27 -12.92 7.11 99.48 0.71 -12.22 16 12 H -0.28 -14.02 7.11 99.48 0.71 -13.31 16 13 N -0.45 -17.51 5.71 -906.40 -5.18 -22.69 16 14 C 0.04 1.54 6.35 85.99 0.55 2.09 16 15 C -0.53 -16.07 1.33 -10.77 -0.01 -16.09 16 16 C 0.05 1.62 5.85 85.99 0.50 2.12 16 17 C -0.05 -0.99 2.94 -11.34 -0.03 -1.03 16 18 H 0.16 2.16 7.73 -2.38 -0.02 2.14 16 19 C 0.48 12.81 4.61 71.24 0.33 13.13 16 20 O -0.54 -17.04 15.21 21.95 0.33 -16.70 16 21 O -0.34 -8.83 10.56 -51.39 -0.54 -9.37 16 22 C 0.03 0.62 10.56 113.37 1.20 1.82 16 23 C -0.12 -1.65 5.82 31.44 0.18 -1.47 16 24 C -0.53 -7.14 7.47 72.73 0.54 -6.60 16 25 S 2.34 71.86 5.70 -56.49 -0.32 71.54 16 26 O -0.97 -38.14 18.00 -127.51 -2.30 -40.44 16 27 O -0.97 -36.47 17.16 -127.51 -2.19 -38.66 16 28 H 0.05 1.58 8.14 -2.38 -0.02 1.56 16 29 H 0.06 2.22 7.75 -2.39 -0.02 2.20 16 30 H 0.03 1.10 8.14 -2.38 -0.02 1.08 16 31 H 0.05 2.63 6.41 -2.39 -0.02 2.61 16 32 H 0.04 1.79 7.41 -2.38 -0.02 1.77 16 33 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 34 H 0.08 3.13 5.98 -2.39 -0.01 3.12 16 35 H 0.07 3.14 6.06 -2.39 -0.01 3.13 16 36 H 0.08 3.40 5.15 -2.39 -0.01 3.38 16 37 H 0.13 3.23 7.86 -2.39 -0.02 3.21 16 38 H 0.13 1.93 8.14 -2.39 -0.02 1.91 16 39 H 0.07 1.29 8.13 -2.38 -0.02 1.27 16 40 H 0.05 1.13 8.13 -2.39 -0.02 1.11 16 41 H 0.16 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.09 1.65 6.87 -2.38 -0.02 1.63 16 43 H 0.18 1.14 8.14 -2.38 -0.02 1.12 16 44 H 0.17 1.51 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -78.49 356.39 -2.09 -80.58 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: 1.01 Total: 12.63 kcal Atomic # 6 Polarization: -37.61 SS G_CDS: 4.81 Total: -32.80 kcal Atomic # 7 Polarization: -69.03 SS G_CDS: -4.93 Total: -73.95 kcal Atomic # 8 Polarization: -100.48 SS G_CDS: -4.69 Total: -105.17 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Atomic # 16 Polarization: 71.86 SS G_CDS: -0.32 Total: 71.54 kcal Total: -78.49 -2.09 -80.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255173824.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.662 kcal (2) G-P(sol) polarization free energy of solvation -78.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds