Wall clock time and date at job start Tue Mar 31 2020 16:53:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47591 * 2 1 4 4 H 1.08998 * 109.46962 * 57.28948 * 3 2 1 5 5 C 1.50700 * 109.47353 * 177.28629 * 3 2 1 6 6 H 1.08003 * 119.99727 * 54.65768 * 5 3 2 7 7 C 1.37874 * 120.00044 * 234.65860 * 5 3 2 8 8 N 1.31510 * 120.00232 * 5.97612 * 7 5 3 9 9 Si 1.86799 * 119.99665 * 185.97101 * 7 5 3 10 10 H 1.48501 * 109.47174 * 179.97438 * 9 7 5 11 11 H 1.48501 * 109.47527 * 299.99907 * 9 7 5 12 12 H 1.48500 * 109.47452 * 60.00517 * 9 7 5 13 13 N 1.46897 * 109.47319 * 297.28984 * 3 2 1 14 14 C 1.47736 * 110.99813 * 282.78339 * 13 3 2 15 15 C 1.52185 * 87.55222 * 222.30956 * 14 13 3 16 16 C 1.47728 * 111.00523 * 186.41574 * 13 3 2 17 17 C 1.52910 * 116.79289 * 142.68100 * 15 14 13 18 18 H 1.09004 * 109.67941 * 223.62056 * 17 15 14 19 19 C 1.50698 * 109.67885 * 344.03683 * 17 15 14 20 20 O 1.20829 * 120.00327 * 248.68993 * 19 17 15 21 21 O 1.34231 * 120.00143 * 68.69533 * 19 17 15 22 22 C 1.45200 * 117.00320 * 179.97438 * 21 19 17 23 23 C 1.54188 * 108.50907 * 103.83018 * 17 15 14 24 24 C 1.55148 * 106.87644 * 46.00439 * 23 17 15 25 25 S 1.82028 * 115.79209 * 268.87167 * 15 14 13 26 26 O 1.42097 * 109.41080 * 343.64294 * 25 15 14 27 27 O 1.42101 * 109.41225 * 116.86114 * 25 15 14 28 28 H 1.08998 * 109.47574 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47134 * 300.00354 * 1 2 3 30 30 H 1.08999 * 109.46941 * 59.99728 * 1 2 3 31 31 H 1.09004 * 109.47134 * 239.99646 * 2 1 3 32 32 H 1.08999 * 109.46941 * 120.00272 * 2 1 3 33 33 H 0.96999 * 120.00155 * 355.00255 * 8 7 5 34 34 H 1.08992 * 113.53445 * 336.97626 * 14 13 3 35 35 H 1.08996 * 113.53965 * 107.64518 * 14 13 3 36 36 H 1.09000 * 113.54180 * 252.36210 * 16 13 3 37 37 H 1.09002 * 113.53544 * 23.01499 * 16 13 3 38 38 H 1.09001 * 109.46943 * 179.97438 * 22 21 19 39 39 H 1.09000 * 109.47155 * 300.00491 * 22 21 19 40 40 H 1.09003 * 109.46699 * 59.99881 * 22 21 19 41 41 H 1.08999 * 109.97691 * 286.64963 * 23 17 15 42 42 H 1.09001 * 110.00828 * 165.38044 * 23 17 15 43 43 H 1.09003 * 110.77425 * 199.94223 * 24 23 17 44 44 H 1.08996 * 110.94401 * 76.57781 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6376 1.9701 0.8647 5 6 3.5456 1.4429 0.0673 6 1 4.1188 0.8900 -0.6622 7 6 4.1910 2.1491 1.0600 8 7 3.4954 2.7248 2.0161 9 14 6.0538 2.2879 1.0471 10 1 6.4983 3.0931 2.2130 11 1 6.6520 0.9309 1.1253 12 1 6.4922 2.9506 -0.2074 13 7 1.6047 2.1158 -1.2308 14 6 2.4348 1.7042 -2.3815 15 6 2.4462 3.1639 -2.8119 16 6 2.2051 3.4612 -1.3391 17 6 3.7461 3.6937 -3.4182 18 1 3.9693 4.6776 -3.0056 19 6 4.8753 2.7461 -3.1048 20 8 5.7530 3.0822 -2.3454 21 8 4.9062 1.5288 -3.6695 22 6 6.0238 0.6692 -3.3224 23 6 3.5662 3.7999 -4.9458 24 6 2.1929 4.4787 -5.1915 25 16 1.1157 3.6647 -3.9489 26 8 0.5242 2.5071 -4.5227 27 8 0.2972 4.6399 -3.3177 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 2.5260 2.7147 1.9839 34 1 3.4169 1.3268 -2.0967 35 1 1.9157 1.0484 -3.0803 36 1 1.4946 4.2701 -1.1688 37 1 3.1229 3.5760 -0.7623 38 1 5.9267 -0.2821 -3.8455 39 1 6.9570 1.1511 -3.6140 40 1 6.0264 0.4933 -2.2467 41 1 3.5752 2.8053 -5.3919 42 1 4.3638 4.4070 -5.3740 43 1 1.8376 4.2778 -6.2022 44 1 2.2507 5.5518 -5.0097 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255173831.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:53:53 Heat of formation + Delta-G solvation = -108.888841 kcal Electronic energy + Delta-G solvation = -29830.520184 eV Core-core repulsion = 25877.118833 eV Total energy + Delta-G solvation = -3953.401351 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.133 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.98559 -39.27106 -36.86225 -36.34165 -35.97225 -35.66185 -33.85094 -32.06246 -29.59702 -27.88804 -26.75898 -25.57608 -25.01994 -23.24802 -22.75213 -21.31447 -20.17663 -19.57538 -18.26006 -17.38501 -16.85821 -16.63791 -16.46510 -16.23448 -15.92288 -15.40149 -15.08519 -14.27623 -14.10056 -13.79473 -13.62753 -13.51059 -13.36596 -12.98700 -12.81042 -12.78476 -12.55726 -12.36168 -12.02133 -11.87789 -11.84379 -11.63558 -11.43937 -11.13708 -10.96337 -10.76558 -10.71303 -10.53180 -10.49195 -10.37720 -10.20946 -10.06942 -9.87799 -9.73221 -9.34357 -9.13756 -8.55905 -7.62187 -6.51082 -4.30580 0.15469 2.35163 2.72578 2.94019 3.37065 3.51219 3.63613 3.70025 3.87600 4.27998 4.38239 4.43229 4.45062 4.52350 4.79582 5.01899 5.15278 5.19007 5.27408 5.33950 5.38136 5.43473 5.52644 5.63546 5.71694 5.79209 5.94759 6.09916 6.21578 6.26215 6.40722 6.44843 6.48282 6.60742 6.68931 6.76508 6.84367 7.08312 7.30324 7.45073 7.72321 7.98512 8.15029 8.24609 8.67597 9.44426 10.83847 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.011472 B = 0.007390 C = 0.005649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2440.180347 B = 3787.749234 C = 4955.409622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.099 4.099 3 C 0.149 3.851 4 H 0.063 0.937 5 C -0.621 4.621 6 H 0.052 0.948 7 C 0.042 3.958 8 N -0.899 5.899 9 Si 1.030 2.970 10 H -0.286 1.286 11 H -0.292 1.292 12 H -0.246 1.246 13 N -0.487 5.487 14 C 0.050 3.950 15 C -0.567 4.567 16 C 0.056 3.944 17 C -0.060 4.060 18 H 0.129 0.871 19 C 0.478 3.522 20 O -0.479 6.479 21 O -0.355 6.355 22 C 0.034 3.966 23 C -0.112 4.112 24 C -0.597 4.597 25 S 2.421 3.579 26 O -0.926 6.926 27 O -0.929 6.929 28 H 0.032 0.968 29 H 0.042 0.958 30 H 0.058 0.942 31 H 0.043 0.957 32 H 0.052 0.948 33 H 0.272 0.728 34 H 0.114 0.886 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.112 0.888 38 H 0.099 0.901 39 H 0.059 0.941 40 H 0.068 0.932 41 H 0.101 0.899 42 H 0.099 0.901 43 H 0.138 0.862 44 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.941 1.257 -14.874 15.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.137 4.137 3 C 0.043 3.957 4 H 0.081 0.919 5 C -0.660 4.660 6 H 0.070 0.930 7 C -0.166 4.166 8 N -0.535 5.535 9 Si 0.856 3.144 10 H -0.211 1.211 11 H -0.219 1.219 12 H -0.170 1.170 13 N -0.210 5.210 14 C -0.080 4.080 15 C -0.657 4.657 16 C -0.074 4.074 17 C -0.081 4.081 18 H 0.147 0.853 19 C 0.319 3.681 20 O -0.364 6.364 21 O -0.272 6.272 22 C -0.060 4.060 23 C -0.150 4.150 24 C -0.726 4.726 25 S 2.602 3.398 26 O -0.923 6.923 27 O -0.926 6.926 28 H 0.051 0.949 29 H 0.061 0.939 30 H 0.077 0.923 31 H 0.061 0.939 32 H 0.070 0.930 33 H 0.085 0.915 34 H 0.132 0.868 35 H 0.103 0.897 36 H 0.103 0.897 37 H 0.130 0.870 38 H 0.117 0.883 39 H 0.077 0.923 40 H 0.086 0.914 41 H 0.119 0.881 42 H 0.118 0.882 43 H 0.157 0.843 44 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 1.765 1.692 -13.701 13.918 hybrid contribution 0.712 -0.530 -0.596 1.069 sum 2.478 1.162 -14.297 14.556 Atomic orbital electron populations 1.21769 0.97650 0.99266 1.01626 1.21459 0.93604 0.98476 1.00156 1.19997 0.94617 0.91447 0.89644 0.91950 1.22126 0.91589 1.34932 1.17360 0.93030 1.25750 1.06626 0.92606 0.91626 1.70884 1.09097 1.42714 1.30831 0.84180 0.75013 0.76924 0.78256 1.21113 1.21875 1.17000 1.69416 1.43019 1.02532 1.06074 1.23446 1.02073 0.88210 0.94222 1.31373 1.11229 1.10858 1.12227 1.23206 1.02243 0.95374 0.86533 1.21458 0.91248 0.98957 0.96392 0.85260 1.22846 0.86031 0.81505 0.77768 1.90809 1.37833 1.76232 1.31565 1.86485 1.48131 1.26296 1.66279 1.23272 0.87275 0.92874 1.02558 1.22268 0.96085 1.03180 0.93465 1.30737 1.11620 1.12543 1.17653 1.08351 0.77413 0.76266 0.77757 1.93573 1.73761 1.48360 1.76569 1.93574 1.63847 1.60771 1.74447 0.94866 0.93858 0.92273 0.93851 0.92971 0.91454 0.86840 0.89719 0.89663 0.87036 0.88283 0.92255 0.91350 0.88093 0.88215 0.84349 0.84380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.77 9.78 37.16 0.36 -2.40 16 2 C -0.10 -2.10 5.45 -26.74 -0.15 -2.24 16 3 C 0.15 3.47 2.30 -68.87 -0.16 3.31 16 4 H 0.06 1.61 5.63 -51.93 -0.29 1.32 16 5 C -0.62 -15.38 5.73 -34.44 -0.20 -15.57 16 6 H 0.05 1.29 6.20 -52.48 -0.33 0.96 16 7 C 0.04 1.10 4.72 -17.82 -0.08 1.02 16 8 N -0.90 -25.37 13.65 55.43 0.76 -24.61 16 9 Si 1.03 24.01 29.79 -169.99 -5.06 18.94 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.25 -5.56 5.20 56.52 0.29 -5.26 16 13 N -0.49 -10.26 5.74 -238.21 -1.37 -11.62 16 14 C 0.05 0.94 5.27 -6.75 -0.04 0.90 16 15 C -0.57 -9.28 1.27 -91.51 -0.12 -9.40 16 16 C 0.06 1.12 6.87 -6.75 -0.05 1.07 16 17 C -0.06 -0.82 2.70 -91.20 -0.25 -1.06 16 18 H 0.13 1.60 8.12 -51.93 -0.42 1.18 16 19 C 0.48 7.76 5.40 36.00 0.19 7.96 16 20 O -0.48 -9.32 14.89 -18.75 -0.28 -9.60 16 21 O -0.35 -5.23 8.20 -39.26 -0.32 -5.55 16 22 C 0.03 0.44 10.56 101.05 1.07 1.50 16 23 C -0.11 -1.08 5.79 -24.97 -0.14 -1.23 16 24 C -0.60 -5.51 7.34 38.29 0.28 -5.23 16 25 S 2.42 35.79 5.88 -107.50 -0.63 35.16 16 26 O -0.93 -16.03 17.20 -57.72 -0.99 -17.02 16 27 O -0.93 -16.41 17.24 -57.72 -1.00 -17.40 16 28 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.06 1.14 7.68 -51.93 -0.40 0.74 16 31 H 0.04 0.90 7.73 -51.93 -0.40 0.50 16 32 H 0.05 1.15 8.14 -51.93 -0.42 0.72 16 33 H 0.27 7.66 6.25 -40.82 -0.26 7.41 16 34 H 0.11 2.28 2.77 -51.93 -0.14 2.14 16 35 H 0.08 1.55 7.38 -51.93 -0.38 1.16 16 36 H 0.09 1.65 7.41 -51.93 -0.38 1.26 16 37 H 0.11 2.53 6.00 -51.93 -0.31 2.22 16 38 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.06 0.69 8.13 -51.93 -0.42 0.26 16 40 H 0.07 1.03 8.13 -51.93 -0.42 0.61 16 41 H 0.10 0.93 7.62 -51.93 -0.40 0.54 16 42 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 43 H 0.14 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.14 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 351.23 15.07 5.29 5.29 Total: -1.00 -32.97 351.23 -9.29 -42.26 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: -6.42 Total: 5.53 kcal Atomic # 6 Polarization: -22.10 SS G_CDS: 0.73 Total: -21.37 kcal Atomic # 7 Polarization: -35.62 SS G_CDS: -0.61 Total: -36.23 kcal Atomic # 8 Polarization: -46.99 SS G_CDS: -2.59 Total: -49.58 kcal Atomic # 14 Polarization: 24.01 SS G_CDS: -5.06 Total: 18.94 kcal Atomic # 16 Polarization: 35.79 SS G_CDS: -0.63 Total: 35.16 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.97 -9.29 -42.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255173831.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.625 kcal (2) G-P(sol) polarization free energy of solvation -32.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds