Wall clock time and date at job start Tue Mar 31 2020 16:53:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47591 * 2 1 4 4 H 1.08998 * 109.46962 * 57.28948 * 3 2 1 5 5 C 1.50700 * 109.47353 * 177.28629 * 3 2 1 6 6 H 1.08003 * 119.99727 * 54.65768 * 5 3 2 7 7 C 1.37874 * 120.00044 * 234.65860 * 5 3 2 8 8 N 1.31510 * 120.00232 * 5.97612 * 7 5 3 9 9 Si 1.86799 * 119.99665 * 185.97101 * 7 5 3 10 10 H 1.48501 * 109.47174 * 179.97438 * 9 7 5 11 11 H 1.48501 * 109.47527 * 299.99907 * 9 7 5 12 12 H 1.48500 * 109.47452 * 60.00517 * 9 7 5 13 13 N 1.46897 * 109.47319 * 297.28984 * 3 2 1 14 14 C 1.47736 * 110.99813 * 282.78339 * 13 3 2 15 15 C 1.52185 * 87.55222 * 222.30956 * 14 13 3 16 16 C 1.47728 * 111.00523 * 186.41574 * 13 3 2 17 17 C 1.52910 * 116.79289 * 142.68100 * 15 14 13 18 18 H 1.09004 * 109.67941 * 223.62056 * 17 15 14 19 19 C 1.50698 * 109.67885 * 344.03683 * 17 15 14 20 20 O 1.20829 * 120.00327 * 248.68993 * 19 17 15 21 21 O 1.34231 * 120.00143 * 68.69533 * 19 17 15 22 22 C 1.45200 * 117.00320 * 179.97438 * 21 19 17 23 23 C 1.54188 * 108.50907 * 103.83018 * 17 15 14 24 24 C 1.55148 * 106.87644 * 46.00439 * 23 17 15 25 25 S 1.82028 * 115.79209 * 268.87167 * 15 14 13 26 26 O 1.42097 * 109.41080 * 343.64294 * 25 15 14 27 27 O 1.42101 * 109.41225 * 116.86114 * 25 15 14 28 28 H 1.08998 * 109.47574 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47134 * 300.00354 * 1 2 3 30 30 H 1.08999 * 109.46941 * 59.99728 * 1 2 3 31 31 H 1.09004 * 109.47134 * 239.99646 * 2 1 3 32 32 H 1.08999 * 109.46941 * 120.00272 * 2 1 3 33 33 H 0.96999 * 120.00155 * 355.00255 * 8 7 5 34 34 H 1.08992 * 113.53445 * 336.97626 * 14 13 3 35 35 H 1.08996 * 113.53965 * 107.64518 * 14 13 3 36 36 H 1.09000 * 113.54180 * 252.36210 * 16 13 3 37 37 H 1.09002 * 113.53544 * 23.01499 * 16 13 3 38 38 H 1.09001 * 109.46943 * 179.97438 * 22 21 19 39 39 H 1.09000 * 109.47155 * 300.00491 * 22 21 19 40 40 H 1.09003 * 109.46699 * 59.99881 * 22 21 19 41 41 H 1.08999 * 109.97691 * 286.64963 * 23 17 15 42 42 H 1.09001 * 110.00828 * 165.38044 * 23 17 15 43 43 H 1.09003 * 110.77425 * 199.94223 * 24 23 17 44 44 H 1.08996 * 110.94401 * 76.57781 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6376 1.9701 0.8647 5 6 3.5456 1.4429 0.0673 6 1 4.1188 0.8900 -0.6622 7 6 4.1910 2.1491 1.0600 8 7 3.4954 2.7248 2.0161 9 14 6.0538 2.2879 1.0471 10 1 6.4983 3.0931 2.2130 11 1 6.6520 0.9309 1.1253 12 1 6.4922 2.9506 -0.2074 13 7 1.6047 2.1158 -1.2308 14 6 2.4348 1.7042 -2.3815 15 6 2.4462 3.1639 -2.8119 16 6 2.2051 3.4612 -1.3391 17 6 3.7461 3.6937 -3.4182 18 1 3.9693 4.6776 -3.0056 19 6 4.8753 2.7461 -3.1048 20 8 5.7530 3.0822 -2.3454 21 8 4.9062 1.5288 -3.6695 22 6 6.0238 0.6692 -3.3224 23 6 3.5662 3.7999 -4.9458 24 6 2.1929 4.4787 -5.1915 25 16 1.1157 3.6647 -3.9489 26 8 0.5242 2.5071 -4.5227 27 8 0.2972 4.6399 -3.3177 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 2.5260 2.7147 1.9839 34 1 3.4169 1.3268 -2.0967 35 1 1.9157 1.0484 -3.0803 36 1 1.4946 4.2701 -1.1688 37 1 3.1229 3.5760 -0.7623 38 1 5.9267 -0.2821 -3.8455 39 1 6.9570 1.1511 -3.6140 40 1 6.0264 0.4933 -2.2467 41 1 3.5752 2.8053 -5.3919 42 1 4.3638 4.4070 -5.3740 43 1 1.8376 4.2778 -6.2022 44 1 2.2507 5.5518 -5.0097 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255173831.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:53:52 Heat of formation + Delta-G solvation = -134.651306 kcal Electronic energy + Delta-G solvation = -29831.637328 eV Core-core repulsion = 25877.118833 eV Total energy + Delta-G solvation = -3954.518496 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.133 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.33806 -40.71531 -38.09637 -37.55267 -37.22792 -36.95200 -35.42058 -33.94475 -30.79352 -29.26052 -28.07414 -27.15214 -26.61009 -24.92632 -23.77697 -22.77741 -21.43273 -21.30710 -19.50097 -18.71151 -18.51868 -17.99958 -17.69445 -17.39078 -17.24686 -16.62504 -16.58062 -15.72956 -15.68046 -15.49142 -14.92972 -14.74819 -14.63334 -14.47159 -14.20437 -14.17082 -13.89356 -13.53082 -13.35753 -13.12452 -12.94468 -12.89036 -12.85991 -12.69565 -12.52380 -12.39798 -12.21200 -12.09905 -11.98186 -11.67819 -11.59155 -11.51870 -11.38877 -11.29477 -11.06911 -10.90028 -10.57841 -9.41319 -8.61307 -6.38790 -0.95766 1.11688 1.45302 1.59113 1.60942 1.74918 1.81703 2.48832 2.58629 2.59545 3.06051 3.22604 3.33409 3.42299 3.46938 3.77589 3.87225 4.06596 4.15184 4.24514 4.32947 4.35975 4.41083 4.42752 4.58388 4.64933 4.67380 4.71807 4.77217 4.81667 4.84813 4.88553 4.98454 5.03671 5.08014 5.13971 5.40419 5.44132 5.48483 5.65437 5.83240 6.13597 6.34200 6.58689 6.76319 7.41258 8.73197 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.011472 B = 0.007390 C = 0.005649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2440.180347 B = 3787.749234 C = 4955.409622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.095 4.095 3 C 0.150 3.850 4 H 0.030 0.970 5 C -0.602 4.602 6 H 0.049 0.951 7 C 0.002 3.998 8 N -0.933 5.933 9 Si 1.065 2.935 10 H -0.298 1.298 11 H -0.281 1.281 12 H -0.235 1.235 13 N -0.495 5.495 14 C 0.050 3.950 15 C -0.560 4.560 16 C 0.051 3.949 17 C -0.064 4.064 18 H 0.142 0.858 19 C 0.476 3.524 20 O -0.519 6.519 21 O -0.353 6.353 22 C 0.027 3.973 23 C -0.108 4.108 24 C -0.545 4.545 25 S 2.408 3.592 26 O -0.956 6.956 27 O -0.967 6.967 28 H 0.060 0.940 29 H 0.037 0.963 30 H 0.054 0.946 31 H 0.047 0.953 32 H 0.039 0.961 33 H 0.261 0.739 34 H 0.100 0.900 35 H 0.090 0.910 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.133 0.867 39 H 0.072 0.928 40 H 0.039 0.961 41 H 0.111 0.889 42 H 0.141 0.859 43 H 0.180 0.820 44 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.673 1.663 -18.832 19.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.134 4.134 3 C 0.043 3.957 4 H 0.048 0.952 5 C -0.642 4.642 6 H 0.067 0.933 7 C -0.200 4.200 8 N -0.571 5.571 9 Si 0.889 3.111 10 H -0.224 1.224 11 H -0.207 1.207 12 H -0.159 1.159 13 N -0.218 5.218 14 C -0.079 4.079 15 C -0.647 4.647 16 C -0.079 4.079 17 C -0.085 4.085 18 H 0.160 0.840 19 C 0.319 3.681 20 O -0.407 6.407 21 O -0.269 6.269 22 C -0.066 4.066 23 C -0.146 4.146 24 C -0.679 4.679 25 S 2.593 3.407 26 O -0.953 6.953 27 O -0.965 6.965 28 H 0.079 0.921 29 H 0.057 0.943 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.058 0.942 33 H 0.073 0.927 34 H 0.117 0.883 35 H 0.108 0.892 36 H 0.099 0.901 37 H 0.098 0.902 38 H 0.152 0.848 39 H 0.091 0.909 40 H 0.058 0.942 41 H 0.129 0.871 42 H 0.159 0.841 43 H 0.197 0.803 44 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 2.469 2.035 -17.631 17.919 hybrid contribution 0.485 -0.674 0.518 0.979 sum 2.954 1.361 -17.113 17.420 Atomic orbital electron populations 1.21657 0.95652 1.00880 1.01139 1.21373 0.95406 0.96921 0.99671 1.19893 0.93680 0.92431 0.89706 0.95174 1.22233 0.92475 1.33243 1.16199 0.93287 1.26629 1.09085 0.92608 0.91706 1.70965 1.08477 1.45235 1.32443 0.83714 0.72130 0.77216 0.78006 1.22439 1.20722 1.15870 1.69302 1.43614 1.03185 1.05662 1.23325 1.00782 0.90387 0.93445 1.31291 1.14531 1.08242 1.10678 1.22983 1.00548 0.94724 0.89625 1.21652 0.88554 0.98598 0.99670 0.84035 1.23361 0.85940 0.81926 0.76888 1.90780 1.39625 1.77011 1.33285 1.86484 1.48756 1.25904 1.65749 1.23501 0.87499 0.94288 1.01289 1.22436 0.97397 1.04934 0.89861 1.30525 1.08029 1.13366 1.15961 1.08603 0.77658 0.75963 0.78489 1.93533 1.74984 1.50287 1.76531 1.93528 1.65723 1.60963 1.76243 0.92147 0.94332 0.92735 0.93382 0.94225 0.92683 0.88272 0.89186 0.90075 0.90234 0.84846 0.90894 0.94220 0.87050 0.84069 0.80266 0.80988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.17 9.78 71.98 0.70 -4.47 16 2 C -0.10 -4.15 5.45 30.59 0.17 -3.98 16 3 C 0.15 7.28 2.30 44.17 0.10 7.38 16 4 H 0.03 1.66 5.63 -2.39 -0.01 1.65 16 5 C -0.60 -30.90 5.73 25.60 0.15 -30.76 16 6 H 0.05 2.52 6.20 -2.91 -0.02 2.50 16 7 C 0.00 0.09 4.72 84.65 0.40 0.49 16 8 N -0.93 -55.26 13.65 21.45 0.29 -54.96 16 9 Si 1.07 50.12 29.79 68.60 2.04 52.16 16 10 H -0.30 -14.54 7.11 99.48 0.71 -13.83 16 11 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 12 H -0.24 -10.61 5.20 99.48 0.52 -10.09 16 13 N -0.49 -21.49 5.74 -907.57 -5.21 -26.70 16 14 C 0.05 1.88 5.27 83.95 0.44 2.32 16 15 C -0.56 -17.83 1.27 -11.36 -0.01 -17.84 16 16 C 0.05 2.11 6.87 83.95 0.58 2.69 16 17 C -0.06 -1.58 2.70 -11.17 -0.03 -1.61 16 18 H 0.14 3.14 8.12 -2.38 -0.02 3.12 16 19 C 0.48 14.71 5.40 71.24 0.38 15.10 16 20 O -0.52 -19.84 14.89 21.95 0.33 -19.51 16 21 O -0.35 -9.69 8.20 -51.43 -0.42 -10.11 16 22 C 0.03 0.66 10.56 113.37 1.20 1.86 16 23 C -0.11 -1.47 5.79 31.73 0.18 -1.29 16 24 C -0.54 -6.63 7.34 72.72 0.53 -6.10 16 25 S 2.41 65.90 5.88 -56.49 -0.33 65.57 16 26 O -0.96 -31.41 17.20 -127.48 -2.19 -33.60 16 27 O -0.97 -33.29 17.24 -127.48 -2.20 -35.49 16 28 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 29 H 0.04 1.47 8.14 -2.38 -0.02 1.45 16 30 H 0.05 2.11 7.68 -2.39 -0.02 2.09 16 31 H 0.05 2.01 7.73 -2.38 -0.02 1.99 16 32 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.26 15.66 6.25 -92.71 -0.58 15.08 16 34 H 0.10 4.02 2.77 -2.39 -0.01 4.02 16 35 H 0.09 3.25 7.38 -2.39 -0.02 3.23 16 36 H 0.08 3.32 7.41 -2.39 -0.02 3.30 16 37 H 0.08 3.81 6.00 -2.39 -0.01 3.79 16 38 H 0.13 2.21 8.14 -2.39 -0.02 2.19 16 39 H 0.07 1.54 8.13 -2.39 -0.02 1.53 16 40 H 0.04 1.18 8.13 -2.39 -0.02 1.16 16 41 H 0.11 1.41 7.62 -2.39 -0.02 1.39 16 42 H 0.14 1.01 8.14 -2.39 -0.02 0.99 16 43 H 0.18 1.06 8.14 -2.39 -0.02 1.04 16 44 H 0.17 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -77.36 351.23 -1.88 -79.25 By element: Atomic # 1 Polarization: 18.60 SS G_CDS: 1.01 Total: 19.61 kcal Atomic # 6 Polarization: -41.01 SS G_CDS: 4.79 Total: -36.22 kcal Atomic # 7 Polarization: -76.75 SS G_CDS: -4.92 Total: -81.66 kcal Atomic # 8 Polarization: -94.23 SS G_CDS: -4.48 Total: -98.71 kcal Atomic # 14 Polarization: 50.12 SS G_CDS: 2.04 Total: 52.16 kcal Atomic # 16 Polarization: 65.90 SS G_CDS: -0.33 Total: 65.57 kcal Total: -77.36 -1.88 -79.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255173831.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.404 kcal (2) G-P(sol) polarization free energy of solvation -77.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds