Wall clock time and date at job start Tue Mar 31 2020 16:48:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.46758 * 2 1 4 4 C 1.53002 * 109.46826 * 240.00369 * 2 1 3 5 5 O 1.45198 * 109.47234 * 120.00181 * 2 1 3 6 6 C 1.34637 * 117.00211 * 59.99827 * 5 2 1 7 7 O 1.21508 * 119.99902 * 359.97438 * 6 5 2 8 8 N 1.34773 * 119.99803 * 180.27504 * 6 5 2 9 9 C 1.46495 * 119.99923 * 179.72741 * 8 6 5 10 10 C 1.53005 * 109.47374 * 185.32812 * 9 8 6 11 11 O 1.45195 * 115.54811 * 273.76585 * 10 9 8 12 12 C 1.34228 * 117.00075 * 295.54500 * 11 10 9 13 13 O 1.20824 * 120.00442 * 354.78696 * 12 11 10 14 14 C 1.50708 * 119.99977 * 174.78679 * 12 11 10 15 15 S 1.80997 * 109.47172 * 180.02562 * 14 12 11 16 16 C 1.76195 * 100.00124 * 179.97438 * 15 14 12 17 17 H 1.07999 * 119.99930 * 0.02562 * 16 15 14 18 18 C 1.38798 * 120.00024 * 179.97438 * 16 15 14 19 19 N 1.31632 * 119.99916 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99945 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47213 * 90.00296 * 20 18 16 22 22 H 1.48500 * 109.47240 * 210.00125 * 20 18 16 23 23 H 1.48495 * 109.47385 * 330.00310 * 20 18 16 24 24 C 1.52996 * 117.50094 * 128.05528 * 10 9 8 25 25 C 1.52997 * 60.00303 * 252.51209 * 24 10 9 26 26 H 1.09001 * 109.47110 * 299.99691 * 1 2 3 27 27 H 1.08997 * 109.47620 * 59.99697 * 1 2 3 28 28 H 1.08997 * 109.47023 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46791 * 180.02562 * 3 2 1 30 30 H 1.09002 * 109.47108 * 299.99788 * 3 2 1 31 31 H 1.08996 * 109.47473 * 60.00448 * 3 2 1 32 32 H 1.08997 * 109.46863 * 299.99539 * 4 2 1 33 33 H 1.08999 * 109.47511 * 59.99308 * 4 2 1 34 34 H 1.09004 * 109.46718 * 180.02562 * 4 2 1 35 35 H 0.97001 * 120.00550 * 359.72355 * 8 6 5 36 36 H 1.09006 * 109.47233 * 305.32816 * 9 8 6 37 37 H 1.08999 * 109.47433 * 65.32565 * 9 8 6 38 38 H 1.08999 * 109.46940 * 299.99887 * 14 12 11 39 39 H 1.09003 * 109.47000 * 59.99971 * 14 12 11 40 40 H 0.97000 * 119.99745 * 179.97438 * 19 18 16 41 41 H 1.09002 * 117.49942 * 0.02562 * 24 10 9 42 42 H 1.08998 * 117.49848 * 145.01743 * 24 10 9 43 43 H 1.08992 * 117.49963 * 252.51097 * 25 24 10 44 44 H 1.09005 * 117.51841 * 107.47739 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0141 -0.6845 1.1855 6 6 1.6523 -1.9723 1.3383 7 8 0.9509 -2.5094 0.5040 8 7 2.0632 -2.6639 2.4196 9 6 1.6646 -4.0634 2.5889 10 6 2.1477 -4.5703 3.9494 11 8 3.5044 -5.0866 3.9795 12 6 3.7538 -6.1874 3.2530 13 8 2.8496 -6.7569 2.6891 14 6 5.1617 -6.7132 3.1407 15 16 5.1712 -8.1955 2.1021 16 6 6.8891 -8.5852 2.1408 17 1 7.5713 -7.9636 2.7016 18 6 7.3653 -9.6918 1.4514 19 7 6.5337 -10.4497 0.7683 20 14 9.1865 -10.1054 1.4931 21 1 9.4626 -11.0102 2.6377 22 1 9.5703 -10.7785 0.2263 23 1 9.9744 -8.8563 1.6483 24 6 1.1166 -5.2385 4.8610 25 6 1.6415 -3.8409 5.1954 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 3.1300 1.4426 -0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6767 1.9564 0.8900 32 1 1.6767 -1.7488 -1.2493 33 1 1.6765 -0.2074 -2.1393 34 1 3.1300 -0.7216 -1.2491 35 1 2.6228 -2.2351 3.0858 36 1 0.5786 -4.1407 2.5371 37 1 2.1099 -4.6663 1.7975 38 1 5.7992 -5.9514 2.6919 39 1 5.5368 -6.9622 4.1334 40 1 6.8666 -11.2228 0.2863 41 1 0.0942 -5.3174 4.4915 42 1 1.4566 -6.0661 5.4835 43 1 2.3268 -3.7489 6.0379 44 1 0.9647 -2.9996 5.0460 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001263523579.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:48:23 Heat of formation + Delta-G solvation = -138.568099 kcal Electronic energy + Delta-G solvation = -26141.572202 eV Core-core repulsion = 22186.883862 eV Total energy + Delta-G solvation = -3954.688341 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.133 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.98960 -40.38192 -38.06586 -37.10634 -35.24415 -34.56547 -33.77046 -32.50161 -29.70567 -27.67157 -27.58819 -27.57230 -25.58341 -23.11708 -22.77312 -21.97590 -20.36299 -19.64883 -18.40727 -17.87462 -17.22684 -16.75479 -16.45670 -16.15508 -16.00666 -15.25285 -14.99168 -14.86090 -14.70201 -14.52689 -14.17002 -13.69493 -13.58926 -13.30412 -12.83438 -12.75657 -12.67180 -12.43054 -12.23962 -12.14730 -12.11041 -11.84872 -11.64373 -11.53843 -11.43583 -11.12299 -11.08750 -10.90887 -10.73819 -10.56905 -10.33925 -10.11771 -9.94765 -9.87421 -9.34390 -9.13102 -8.38335 -6.62282 -6.28885 -4.01783 1.93473 2.37411 2.60689 2.71573 3.18485 3.19648 3.26676 3.36587 3.50538 3.98206 4.09481 4.13610 4.47016 4.48067 4.51556 4.55675 4.65919 4.79782 5.07004 5.19504 5.20565 5.29151 5.29946 5.34568 5.40867 5.43509 5.52472 5.58709 5.63082 5.65434 5.72130 5.73025 5.74069 5.79752 5.95587 6.03393 6.07439 6.20752 6.35253 6.61604 7.24840 7.53709 8.10976 8.23558 8.28596 9.16596 10.78577 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.013473 B = 0.002585 C = 0.002304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2077.747376 B =10830.073949 C =12148.309142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.136 3.864 3 C -0.140 4.140 4 C -0.186 4.186 5 O -0.365 6.365 6 C 0.650 3.350 7 O -0.565 6.565 8 N -0.707 5.707 9 C 0.162 3.838 10 C 0.022 3.978 11 O -0.325 6.325 12 C 0.476 3.524 13 O -0.475 6.475 14 C -0.129 4.129 15 S -0.055 6.055 16 C -0.537 4.537 17 H 0.076 0.924 18 C 0.074 3.926 19 N -0.867 5.867 20 Si 0.922 3.078 21 H -0.276 1.276 22 H -0.281 1.281 23 H -0.271 1.271 24 C -0.163 4.163 25 C -0.144 4.144 26 H 0.058 0.942 27 H 0.070 0.930 28 H 0.088 0.912 29 H 0.067 0.933 30 H 0.080 0.920 31 H 0.066 0.934 32 H 0.089 0.911 33 H 0.070 0.930 34 H 0.061 0.939 35 H 0.408 0.592 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.102 0.898 39 H 0.102 0.898 40 H 0.270 0.730 41 H 0.110 0.890 42 H 0.110 0.890 43 H 0.111 0.889 44 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.064 22.404 5.149 25.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.099 3.901 3 C -0.197 4.197 4 C -0.243 4.243 5 O -0.280 6.280 6 C 0.403 3.597 7 O -0.454 6.454 8 N -0.367 5.367 9 C 0.040 3.960 10 C -0.016 4.016 11 O -0.243 6.243 12 C 0.317 3.683 13 O -0.359 6.359 14 C -0.277 4.277 15 S 0.171 5.829 16 C -0.685 4.685 17 H 0.094 0.906 18 C -0.135 4.135 19 N -0.502 5.502 20 Si 0.748 3.252 21 H -0.202 1.202 22 H -0.207 1.207 23 H -0.196 1.196 24 C -0.201 4.201 25 C -0.181 4.181 26 H 0.077 0.923 27 H 0.089 0.911 28 H 0.107 0.893 29 H 0.086 0.914 30 H 0.099 0.901 31 H 0.085 0.915 32 H 0.108 0.892 33 H 0.089 0.911 34 H 0.080 0.920 35 H 0.243 0.757 36 H 0.109 0.891 37 H 0.107 0.893 38 H 0.120 0.880 39 H 0.120 0.880 40 H 0.080 0.920 41 H 0.128 0.872 42 H 0.128 0.872 43 H 0.129 0.871 44 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -12.612 21.338 3.859 25.085 hybrid contribution 2.432 0.453 0.841 2.613 sum -10.180 21.791 4.700 24.507 Atomic orbital electron populations 1.22517 0.94021 1.05117 1.02378 1.22077 0.94325 0.91482 0.82177 1.21861 1.02368 0.92500 1.03021 1.22533 1.01784 1.03639 0.96316 1.86293 1.71663 1.23565 1.46500 1.18025 0.78985 0.80519 0.82151 1.90925 1.41053 1.70373 1.43036 1.44709 1.55748 1.12550 1.23710 1.21109 1.00819 0.79195 0.94916 1.22412 0.82778 1.04103 0.92312 1.86586 1.29095 1.43050 1.65576 1.23427 0.92069 0.77480 0.75337 1.90679 1.46219 1.56720 1.42306 1.23327 0.91625 1.05537 1.07202 1.85438 1.12395 1.23866 1.61196 1.22836 0.92462 1.15696 1.37497 0.90602 1.25005 0.99162 0.95002 0.94347 1.70010 1.34873 1.15674 1.29618 0.86118 0.82621 0.78679 0.77814 1.20178 1.20689 1.19587 1.23515 0.98840 0.96439 1.01270 1.23342 1.02018 0.96442 0.96346 0.92268 0.91136 0.89322 0.91394 0.90142 0.91537 0.89229 0.91122 0.92010 0.75685 0.89055 0.89279 0.87962 0.87953 0.92038 0.87193 0.87214 0.87109 0.86972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.68 8.37 37.16 0.31 -1.37 16 2 C 0.14 1.33 1.13 -90.62 -0.10 1.23 16 3 C -0.14 -0.97 8.85 37.16 0.33 -0.64 16 4 C -0.19 -1.92 8.37 37.16 0.31 -1.61 16 5 O -0.37 -4.26 9.94 -40.32 -0.40 -4.66 16 6 C 0.65 8.57 8.06 54.05 0.44 9.01 16 7 O -0.56 -8.81 11.87 -19.28 -0.23 -9.03 16 8 N -0.71 -8.15 5.44 -65.28 -0.36 -8.50 16 9 C 0.16 2.08 5.58 -4.04 -0.02 2.06 16 10 C 0.02 0.27 1.65 -90.62 -0.15 0.12 16 11 O -0.32 -4.91 10.41 -39.25 -0.41 -5.32 16 12 C 0.48 8.87 7.59 36.01 0.27 9.14 16 13 O -0.48 -10.03 14.55 -18.75 -0.27 -10.30 16 14 C -0.13 -2.59 6.27 36.01 0.23 -2.37 16 15 S -0.06 -1.46 20.57 -107.50 -2.21 -3.67 16 16 C -0.54 -15.00 9.50 30.94 0.29 -14.70 16 17 H 0.08 2.00 7.80 -52.49 -0.41 1.60 16 18 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 19 N -0.87 -25.72 13.22 55.49 0.73 -24.99 16 20 Si 0.92 21.12 29.55 -169.99 -5.02 16.10 16 21 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 22 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 23 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 24 C -0.16 -1.66 10.12 -26.73 -0.27 -1.93 16 25 C -0.14 -1.19 9.95 -26.73 -0.27 -1.46 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.09 1.03 5.88 -51.93 -0.31 0.73 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.09 1.17 5.88 -51.93 -0.31 0.87 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.41 3.87 8.47 -40.82 -0.35 3.53 16 36 H 0.09 1.09 7.89 -51.93 -0.41 0.69 16 37 H 0.09 1.45 6.87 -51.93 -0.36 1.09 16 38 H 0.10 1.93 8.14 -51.92 -0.42 1.50 16 39 H 0.10 1.90 8.14 -51.92 -0.42 1.47 16 40 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 41 H 0.11 0.97 8.05 -51.93 -0.42 0.55 16 42 H 0.11 1.18 8.14 -51.93 -0.42 0.76 16 43 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 384.66 15.07 5.80 5.80 Total: -1.00 -33.50 384.66 -7.86 -41.35 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: -6.76 Total: 3.77 kcal Atomic # 6 Polarization: -1.80 SS G_CDS: 1.27 Total: -0.53 kcal Atomic # 7 Polarization: -33.87 SS G_CDS: 0.38 Total: -33.49 kcal Atomic # 8 Polarization: -28.01 SS G_CDS: -1.31 Total: -29.32 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Atomic # 16 Polarization: -1.46 SS G_CDS: -2.21 Total: -3.67 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.50 -7.86 -41.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263523579.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.217 kcal (2) G-P(sol) polarization free energy of solvation -33.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds