Wall clock time and date at job start Tue Mar 31 2020 16:48:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.46758 * 2 1 4 4 C 1.53002 * 109.46826 * 240.00369 * 2 1 3 5 5 O 1.45198 * 109.47234 * 120.00181 * 2 1 3 6 6 C 1.34637 * 117.00211 * 59.99827 * 5 2 1 7 7 O 1.21508 * 119.99902 * 359.97438 * 6 5 2 8 8 N 1.34773 * 119.99803 * 180.27504 * 6 5 2 9 9 C 1.46495 * 119.99923 * 179.72741 * 8 6 5 10 10 C 1.53005 * 109.47374 * 185.32812 * 9 8 6 11 11 O 1.45195 * 115.54811 * 273.76585 * 10 9 8 12 12 C 1.34228 * 117.00075 * 295.54500 * 11 10 9 13 13 O 1.20824 * 120.00442 * 354.78696 * 12 11 10 14 14 C 1.50708 * 119.99977 * 174.78679 * 12 11 10 15 15 S 1.80997 * 109.47172 * 180.02562 * 14 12 11 16 16 C 1.76195 * 100.00124 * 179.97438 * 15 14 12 17 17 H 1.07999 * 119.99930 * 0.02562 * 16 15 14 18 18 C 1.38798 * 120.00024 * 179.97438 * 16 15 14 19 19 N 1.31632 * 119.99916 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99945 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47213 * 90.00296 * 20 18 16 22 22 H 1.48500 * 109.47240 * 210.00125 * 20 18 16 23 23 H 1.48495 * 109.47385 * 330.00310 * 20 18 16 24 24 C 1.52996 * 117.50094 * 128.05528 * 10 9 8 25 25 C 1.52997 * 60.00303 * 252.51209 * 24 10 9 26 26 H 1.09001 * 109.47110 * 299.99691 * 1 2 3 27 27 H 1.08997 * 109.47620 * 59.99697 * 1 2 3 28 28 H 1.08997 * 109.47023 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46791 * 180.02562 * 3 2 1 30 30 H 1.09002 * 109.47108 * 299.99788 * 3 2 1 31 31 H 1.08996 * 109.47473 * 60.00448 * 3 2 1 32 32 H 1.08997 * 109.46863 * 299.99539 * 4 2 1 33 33 H 1.08999 * 109.47511 * 59.99308 * 4 2 1 34 34 H 1.09004 * 109.46718 * 180.02562 * 4 2 1 35 35 H 0.97001 * 120.00550 * 359.72355 * 8 6 5 36 36 H 1.09006 * 109.47233 * 305.32816 * 9 8 6 37 37 H 1.08999 * 109.47433 * 65.32565 * 9 8 6 38 38 H 1.08999 * 109.46940 * 299.99887 * 14 12 11 39 39 H 1.09003 * 109.47000 * 59.99971 * 14 12 11 40 40 H 0.97000 * 119.99745 * 179.97438 * 19 18 16 41 41 H 1.09002 * 117.49942 * 0.02562 * 24 10 9 42 42 H 1.08998 * 117.49848 * 145.01743 * 24 10 9 43 43 H 1.08992 * 117.49963 * 252.51097 * 25 24 10 44 44 H 1.09005 * 117.51841 * 107.47739 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0141 -0.6845 1.1855 6 6 1.6523 -1.9723 1.3383 7 8 0.9509 -2.5094 0.5040 8 7 2.0632 -2.6639 2.4196 9 6 1.6646 -4.0634 2.5889 10 6 2.1477 -4.5703 3.9494 11 8 3.5044 -5.0866 3.9795 12 6 3.7538 -6.1874 3.2530 13 8 2.8496 -6.7569 2.6891 14 6 5.1617 -6.7132 3.1407 15 16 5.1712 -8.1955 2.1021 16 6 6.8891 -8.5852 2.1408 17 1 7.5713 -7.9636 2.7016 18 6 7.3653 -9.6918 1.4514 19 7 6.5337 -10.4497 0.7683 20 14 9.1865 -10.1054 1.4931 21 1 9.4626 -11.0102 2.6377 22 1 9.5703 -10.7785 0.2263 23 1 9.9744 -8.8563 1.6483 24 6 1.1166 -5.2385 4.8610 25 6 1.6415 -3.8409 5.1954 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 3.1300 1.4426 -0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6767 1.9564 0.8900 32 1 1.6767 -1.7488 -1.2493 33 1 1.6765 -0.2074 -2.1393 34 1 3.1300 -0.7216 -1.2491 35 1 2.6228 -2.2351 3.0858 36 1 0.5786 -4.1407 2.5371 37 1 2.1099 -4.6663 1.7975 38 1 5.7992 -5.9514 2.6919 39 1 5.5368 -6.9622 4.1334 40 1 6.8666 -11.2228 0.2863 41 1 0.0942 -5.3174 4.4915 42 1 1.4566 -6.0661 5.4835 43 1 2.3268 -3.7489 6.0379 44 1 0.9647 -2.9996 5.0460 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001263523579.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:48:22 Heat of formation + Delta-G solvation = -160.319632 kcal Electronic energy + Delta-G solvation = -26142.515420 eV Core-core repulsion = 22186.883862 eV Total energy + Delta-G solvation = -3955.631558 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.133 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.02055 -41.58753 -39.16176 -38.13268 -36.46494 -35.52930 -34.62783 -34.61471 -31.31335 -28.57812 -28.37101 -28.27834 -27.72957 -24.12053 -23.76313 -22.93746 -21.37704 -20.78790 -19.86333 -19.37878 -18.40605 -17.78239 -17.57703 -17.36628 -17.20405 -16.90955 -16.40005 -16.12163 -15.86000 -15.54413 -15.31914 -14.94372 -14.62077 -14.44459 -14.29007 -14.11631 -13.60550 -13.33376 -13.20013 -13.10589 -12.92219 -12.91154 -12.86757 -12.69442 -12.62724 -12.54315 -12.47962 -12.35736 -11.95644 -11.78662 -11.41308 -11.34331 -11.28773 -11.17349 -10.99219 -10.39650 -10.37518 -8.75254 -8.38974 -6.18803 0.92569 1.01432 1.12254 1.38790 1.42076 1.53492 1.68406 1.76987 2.22372 2.58541 2.96102 3.04698 3.18297 3.27188 3.54134 3.65762 3.74749 3.77891 3.79707 3.94631 4.13835 4.30304 4.39809 4.51121 4.54334 4.59072 4.61556 4.64017 4.76359 4.76642 4.84640 4.87436 4.88577 4.98752 5.09131 5.18263 5.27940 5.28974 5.34017 5.39363 5.53059 6.16424 6.30849 6.68502 7.02699 7.26238 8.70256 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.013473 B = 0.002585 C = 0.002304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2077.747376 B =10830.073949 C =12148.309142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.124 3.876 3 C -0.134 4.134 4 C -0.184 4.184 5 O -0.365 6.365 6 C 0.646 3.354 7 O -0.594 6.594 8 N -0.696 5.696 9 C 0.171 3.829 10 C -0.012 4.012 11 O -0.314 6.314 12 C 0.483 3.517 13 O -0.507 6.507 14 C -0.109 4.109 15 S -0.136 6.136 16 C -0.548 4.548 17 H 0.086 0.914 18 C 0.015 3.985 19 N -0.910 5.910 20 Si 1.000 3.000 21 H -0.266 1.266 22 H -0.278 1.278 23 H -0.258 1.258 24 C -0.167 4.167 25 C -0.102 4.102 26 H 0.068 0.932 27 H 0.090 0.910 28 H 0.059 0.941 29 H 0.067 0.933 30 H 0.102 0.898 31 H 0.075 0.925 32 H 0.056 0.944 33 H 0.093 0.907 34 H 0.058 0.942 35 H 0.419 0.581 36 H 0.098 0.902 37 H 0.047 0.953 38 H 0.117 0.883 39 H 0.122 0.878 40 H 0.273 0.727 41 H 0.122 0.878 42 H 0.103 0.897 43 H 0.127 0.873 44 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.349 25.036 6.801 27.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.088 3.912 3 C -0.191 4.191 4 C -0.241 4.241 5 O -0.279 6.279 6 C 0.400 3.600 7 O -0.485 6.485 8 N -0.357 5.357 9 C 0.048 3.952 10 C -0.050 4.050 11 O -0.232 6.232 12 C 0.325 3.675 13 O -0.393 6.393 14 C -0.258 4.258 15 S 0.091 5.909 16 C -0.696 4.696 17 H 0.104 0.896 18 C -0.190 4.190 19 N -0.546 5.546 20 Si 0.821 3.179 21 H -0.191 1.191 22 H -0.203 1.203 23 H -0.182 1.182 24 C -0.205 4.205 25 C -0.139 4.139 26 H 0.087 0.913 27 H 0.109 0.891 28 H 0.078 0.922 29 H 0.086 0.914 30 H 0.121 0.879 31 H 0.094 0.906 32 H 0.075 0.925 33 H 0.111 0.889 34 H 0.077 0.923 35 H 0.257 0.743 36 H 0.116 0.884 37 H 0.066 0.934 38 H 0.135 0.865 39 H 0.140 0.860 40 H 0.082 0.918 41 H 0.140 0.860 42 H 0.122 0.878 43 H 0.145 0.855 44 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -11.888 24.015 5.548 27.365 hybrid contribution 2.096 -0.238 0.355 2.139 sum -9.792 23.778 5.902 26.384 Atomic orbital electron populations 1.22464 0.93588 1.03625 1.03878 1.22452 0.94888 0.92735 0.81131 1.21884 1.02360 0.90313 1.04574 1.22509 1.01524 1.02131 0.97958 1.86311 1.71583 1.22606 1.47427 1.18224 0.78733 0.81010 0.82073 1.90922 1.42376 1.71096 1.44090 1.44607 1.55525 1.11949 1.23569 1.20878 1.00821 0.79211 0.94294 1.22761 0.81831 1.06967 0.93453 1.86545 1.31381 1.41143 1.64086 1.23063 0.91037 0.78131 0.75228 1.90672 1.46961 1.57948 1.43747 1.23105 0.93394 1.02629 1.06654 1.85552 1.13249 1.28318 1.63777 1.23188 0.92643 1.16122 1.37635 0.89622 1.26132 1.04518 0.94698 0.93637 1.70167 1.37390 1.16367 1.30705 0.84929 0.75995 0.78867 0.78066 1.19130 1.20295 1.18211 1.23642 0.98763 0.97756 1.00315 1.23562 1.00730 0.95907 0.93656 0.91313 0.89080 0.92222 0.91427 0.87920 0.90642 0.92510 0.88868 0.92324 0.74327 0.88382 0.93438 0.86482 0.85953 0.91843 0.86011 0.87848 0.85485 0.84322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.09 8.37 71.98 0.60 -2.48 16 2 C 0.12 2.29 1.13 -10.79 -0.01 2.27 16 3 C -0.13 -1.52 8.85 71.98 0.64 -0.89 16 4 C -0.18 -3.77 8.37 71.98 0.60 -3.17 16 5 O -0.36 -8.24 9.94 -55.46 -0.55 -8.79 16 6 C 0.65 17.12 8.06 129.79 1.05 18.17 16 7 O -0.59 -19.29 11.87 19.82 0.24 -19.05 16 8 N -0.70 -15.65 5.44 -590.86 -3.22 -18.86 16 9 C 0.17 4.42 5.58 86.38 0.48 4.90 16 10 C -0.01 -0.28 1.65 -10.79 -0.02 -0.30 16 11 O -0.31 -9.20 10.41 -51.40 -0.53 -9.74 16 12 C 0.48 18.16 7.59 71.24 0.54 18.70 16 13 O -0.51 -22.15 14.55 21.97 0.32 -21.83 16 14 C -0.11 -4.39 6.27 71.24 0.45 -3.95 16 15 S -0.14 -7.41 20.57 -56.49 -1.16 -8.58 16 16 C -0.55 -30.89 9.50 67.95 0.65 -30.25 16 17 H 0.09 4.48 7.80 -2.91 -0.02 4.46 16 18 C 0.02 0.86 5.49 84.86 0.47 1.32 16 19 N -0.91 -55.27 13.22 21.65 0.29 -54.98 16 20 Si 1.00 43.15 29.55 68.60 2.03 45.18 16 21 H -0.27 -10.99 7.11 99.48 0.71 -10.29 16 22 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 23 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 24 C -0.17 -3.11 10.12 30.59 0.31 -2.80 16 25 C -0.10 -1.34 9.95 30.59 0.30 -1.03 16 26 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.06 1.41 5.88 -2.39 -0.01 1.40 16 29 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 30 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.06 1.56 5.88 -2.39 -0.01 1.55 16 33 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.06 1.20 8.14 -2.38 -0.02 1.18 16 35 H 0.42 7.28 8.47 -92.71 -0.79 6.50 16 36 H 0.10 2.37 7.89 -2.38 -0.02 2.35 16 37 H 0.05 1.64 6.87 -2.39 -0.02 1.62 16 38 H 0.12 4.35 8.14 -2.40 -0.02 4.33 16 39 H 0.12 4.41 8.14 -2.39 -0.02 4.40 16 40 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 41 H 0.12 1.95 8.05 -2.39 -0.02 1.93 16 42 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 43 H 0.13 1.35 8.14 -2.39 -0.02 1.33 16 44 H 0.14 1.16 8.14 -2.38 -0.02 1.14 16 Total: -1.00 -76.31 384.66 3.68 -72.63 By element: Atomic # 1 Polarization: 23.29 SS G_CDS: 0.23 Total: 23.52 kcal Atomic # 6 Polarization: -5.56 SS G_CDS: 6.05 Total: 0.50 kcal Atomic # 7 Polarization: -70.91 SS G_CDS: -2.93 Total: -73.84 kcal Atomic # 8 Polarization: -58.88 SS G_CDS: -0.53 Total: -59.41 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Atomic # 16 Polarization: -7.41 SS G_CDS: -1.16 Total: -8.58 kcal Total: -76.31 3.68 -72.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263523579.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.692 kcal (2) G-P(sol) polarization free energy of solvation -76.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds