Wall clock time and date at job start Tue Mar 31 2020 16:22:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50700 * 109.46742 * 2 1 4 4 O 1.33782 * 125.07973 * 269.99719 * 3 2 1 5 5 C 1.34910 * 111.36927 * 180.02562 * 4 3 2 6 6 C 1.38969 * 133.10129 * 179.97438 * 5 4 3 7 7 C 1.37844 * 119.97007 * 180.02562 * 6 5 4 8 8 C 1.38685 * 120.65602 * 0.02562 * 7 6 5 9 9 C 1.37840 * 120.19620 * 0.02562 * 8 7 6 10 10 C 1.39099 * 119.63173 * 359.97438 * 9 8 7 11 11 C 1.36139 * 125.08515 * 89.99806 * 3 2 1 12 12 C 1.46926 * 127.15132 * 0.02562 * 11 3 2 13 13 O 1.21570 * 119.99695 * 269.99856 * 12 11 3 14 14 O 1.34809 * 119.99995 * 89.99577 * 12 11 3 15 15 C 1.45201 * 117.00142 * 180.02562 * 14 12 11 16 16 C 1.50697 * 109.47564 * 180.02562 * 15 14 12 17 17 O 1.21280 * 119.99751 * 359.97438 * 16 15 14 18 18 N 1.34777 * 120.00161 * 180.02562 * 16 15 14 19 19 C 1.46503 * 119.99898 * 179.97438 * 18 16 15 20 20 C 1.50701 * 109.46959 * 179.97438 * 19 18 16 21 21 H 1.08008 * 119.99969 * 359.97438 * 20 19 18 22 22 C 1.37875 * 120.00005 * 180.02562 * 20 19 18 23 23 N 1.31518 * 119.99969 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99858 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47081 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.46873 * 119.99916 * 24 22 20 27 27 H 1.48502 * 109.46660 * 239.99281 * 24 22 20 28 28 H 1.08998 * 109.47367 * 299.99917 * 1 2 3 29 29 H 1.08995 * 109.47326 * 60.00542 * 1 2 3 30 30 H 1.09004 * 109.46779 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47367 * 240.00083 * 2 1 3 32 32 H 1.09003 * 109.47196 * 119.99144 * 2 1 3 33 33 H 1.07994 * 120.01375 * 0.02922 * 6 5 4 34 34 H 1.08009 * 119.67009 * 180.27564 * 7 6 5 35 35 H 1.07996 * 119.89836 * 179.97438 * 8 7 6 36 36 H 1.08001 * 120.18342 * 179.97438 * 9 8 7 37 37 H 1.09005 * 109.46848 * 299.99836 * 15 14 12 38 38 H 1.09000 * 109.47444 * 59.99418 * 15 14 12 39 39 H 0.96999 * 119.99873 * 359.97438 * 18 16 15 40 40 H 1.08987 * 109.47022 * 299.99473 * 19 18 16 41 41 H 1.09004 * 109.46806 * 59.99973 * 19 18 16 42 42 H 0.96992 * 119.99826 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 2.2885 2.1457 -1.0948 5 6 2.7259 3.3813 -0.7751 6 6 3.1141 4.4776 -1.5358 7 6 3.5250 5.6368 -0.9134 8 6 3.5565 5.7236 0.4704 9 6 3.1760 4.6462 1.2414 10 6 2.7597 3.4713 0.6239 11 6 2.2930 2.1586 1.1140 12 6 2.1441 1.7359 2.5132 13 8 1.0897 1.9115 3.0923 14 8 3.1766 1.1531 3.1549 15 6 2.9578 0.7606 4.5356 16 6 4.2127 0.1318 5.0841 17 8 5.1946 0.0245 4.3804 18 7 4.2434 -0.3122 6.3562 19 6 5.4632 -0.9241 6.8892 20 6 5.2361 -1.3313 8.3223 21 1 4.2790 -1.1518 8.7894 22 6 6.2505 -1.9319 9.0373 23 7 7.4161 -2.1499 8.4686 24 14 5.9687 -2.4373 10.8134 25 1 4.5829 -2.0851 11.2144 26 1 6.1662 -3.9029 10.9483 27 1 6.9333 -1.7251 11.6896 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5137 0.8901 33 1 3.0940 4.4213 -2.6140 34 1 3.8214 6.4875 -1.5093 35 1 3.8808 6.6377 0.9453 36 1 3.2010 4.7138 2.3190 37 1 2.7040 1.6401 5.1274 38 1 2.1398 0.0419 4.5838 39 1 3.4579 -0.2268 6.9188 40 1 5.7172 -1.8032 6.2973 41 1 6.2811 -0.2050 6.8414 42 1 8.1295 -2.5728 8.9715 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324448978.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:22:40 Heat of formation + Delta-G solvation = -99.173846 kcal Electronic energy + Delta-G solvation = -26969.961939 eV Core-core repulsion = 22881.537910 eV Total energy + Delta-G solvation = -4088.424029 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.97505 -40.41472 -38.71124 -38.28735 -36.37496 -34.73923 -34.27344 -32.78489 -32.42917 -30.78115 -29.57544 -28.90689 -26.78859 -25.01175 -23.92934 -23.21606 -22.52596 -21.61797 -20.40271 -19.96678 -18.43892 -17.61726 -17.51566 -17.01639 -16.63196 -16.36206 -16.02576 -15.76583 -15.33634 -15.05861 -14.73310 -14.54304 -14.44128 -14.25342 -14.05042 -13.54811 -13.07865 -13.04741 -12.86279 -12.58221 -12.50916 -12.31735 -12.02639 -11.97714 -11.79607 -11.56093 -11.27963 -11.01691 -10.96303 -10.92928 -10.76049 -10.39845 -10.36270 -9.44253 -9.21639 -8.98735 -8.80719 -8.52061 -8.01499 -6.21461 -4.28899 0.47590 0.97726 1.60645 1.82987 2.11419 2.52447 3.14224 3.21115 3.28380 3.31362 3.36218 3.85039 3.90647 4.29026 4.35997 4.51832 4.62082 4.65768 4.68444 4.75691 4.88613 4.96611 5.06339 5.13048 5.14564 5.15366 5.18149 5.30334 5.43063 5.45764 5.52627 5.72232 5.83264 5.85152 5.96863 6.09772 6.15418 6.27428 6.72853 7.20200 7.27764 7.43652 7.51328 7.60699 7.89923 8.47158 8.69031 8.93763 9.37615 10.88738 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.018003 B = 0.002257 C = 0.002123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.921018 B =12401.293879 C =13186.027491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.060 4.060 3 C 0.109 3.891 4 O -0.177 6.177 5 C 0.052 3.948 6 C -0.101 4.101 7 C -0.094 4.094 8 C -0.125 4.125 9 C -0.071 4.071 10 C -0.092 4.092 11 C -0.207 4.207 12 C 0.545 3.455 13 O -0.493 6.493 14 O -0.318 6.318 15 C 0.046 3.954 16 C 0.499 3.501 17 O -0.532 6.532 18 N -0.706 5.706 19 C 0.251 3.749 20 C -0.545 4.545 21 H 0.065 0.935 22 C 0.064 3.936 23 N -0.884 5.884 24 Si 0.905 3.095 25 H -0.271 1.271 26 H -0.282 1.282 27 H -0.282 1.282 28 H 0.066 0.934 29 H 0.063 0.937 30 H 0.074 0.926 31 H 0.098 0.902 32 H 0.103 0.897 33 H 0.136 0.864 34 H 0.138 0.862 35 H 0.134 0.866 36 H 0.130 0.870 37 H 0.099 0.901 38 H 0.099 0.901 39 H 0.393 0.607 40 H 0.030 0.970 41 H 0.030 0.970 42 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.499 11.973 -19.916 26.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.097 4.097 3 C 0.059 3.941 4 O -0.078 6.078 5 C 0.005 3.995 6 C -0.119 4.119 7 C -0.112 4.112 8 C -0.143 4.143 9 C -0.089 4.089 10 C -0.093 4.093 11 C -0.210 4.210 12 C 0.388 3.612 13 O -0.380 6.380 14 O -0.233 6.233 15 C -0.032 4.032 16 C 0.282 3.718 17 O -0.409 6.409 18 N -0.356 5.356 19 C 0.131 3.869 20 C -0.583 4.583 21 H 0.083 0.917 22 C -0.140 4.140 23 N -0.522 5.522 24 Si 0.732 3.268 25 H -0.196 1.196 26 H -0.208 1.208 27 H -0.208 1.208 28 H 0.085 0.915 29 H 0.082 0.918 30 H 0.093 0.907 31 H 0.117 0.883 32 H 0.121 0.879 33 H 0.154 0.846 34 H 0.156 0.844 35 H 0.152 0.848 36 H 0.147 0.853 37 H 0.117 0.883 38 H 0.117 0.883 39 H 0.226 0.774 40 H 0.048 0.952 41 H 0.048 0.952 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -12.905 11.753 -20.437 26.877 hybrid contribution -0.426 -0.193 1.572 1.640 sum -13.331 11.560 -18.865 25.831 Atomic orbital electron populations 1.21821 0.92597 1.03285 1.03264 1.20488 0.97406 0.86074 1.05738 1.22614 0.95465 0.93726 0.82269 1.83800 1.68710 1.22059 1.33223 1.19473 1.01849 0.85194 0.92940 1.19961 1.02420 0.89739 0.99826 1.20962 0.98717 0.96760 0.94773 1.21088 1.00836 0.98699 0.93720 1.20561 0.97054 0.90800 1.00491 1.19335 1.03578 0.93648 0.92727 1.19516 1.15273 0.95472 0.90733 1.19940 0.81500 0.74065 0.85740 1.90883 1.28254 1.51579 1.67330 1.86759 1.39955 1.70039 1.26525 1.22959 0.98758 1.01605 0.79870 1.19849 0.88377 0.80201 0.83355 1.90722 1.35811 1.56245 1.58155 1.46365 1.18493 1.59936 1.10832 1.19188 0.80921 0.93346 0.93481 1.21241 0.99449 1.41371 0.96219 0.91699 1.24959 0.94800 0.95302 0.98965 1.69982 1.03222 1.41849 1.37121 0.86335 0.78360 0.78322 0.83750 1.19597 1.20754 1.20759 0.91515 0.91838 0.90703 0.88344 0.87890 0.84648 0.84386 0.84781 0.85255 0.88327 0.88265 0.77400 0.95220 0.95240 0.92409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.89 37.16 0.37 -0.80 16 2 C -0.06 -0.53 6.26 -27.88 -0.17 -0.70 16 3 C 0.11 1.29 6.55 -35.06 -0.23 1.06 16 4 O -0.18 -2.08 10.53 5.39 0.06 -2.02 16 5 C 0.05 0.60 7.39 -38.57 -0.28 0.32 16 6 C -0.10 -0.89 10.06 -39.46 -0.40 -1.28 16 7 C -0.09 -0.71 10.01 -39.56 -0.40 -1.11 16 8 C -0.13 -1.08 10.04 -39.56 -0.40 -1.48 16 9 C -0.07 -0.80 10.09 -39.41 -0.40 -1.20 16 10 C -0.09 -1.20 6.39 -104.97 -0.67 -1.87 16 11 C -0.21 -2.88 6.18 -103.27 -0.64 -3.52 16 12 C 0.55 8.27 7.34 34.25 0.25 8.52 16 13 O -0.49 -7.92 16.90 -19.32 -0.33 -8.24 16 14 O -0.32 -5.31 9.77 -47.47 -0.46 -5.77 16 15 C 0.05 0.70 5.96 36.00 0.21 0.91 16 16 C 0.50 9.99 7.91 -10.99 -0.09 9.90 16 17 O -0.53 -13.08 16.50 -14.10 -0.23 -13.31 16 18 N -0.71 -14.46 5.55 -61.47 -0.34 -14.80 16 19 C 0.25 6.52 5.43 -5.19 -0.03 6.49 16 20 C -0.54 -14.48 9.28 -34.44 -0.32 -14.80 16 21 H 0.06 1.61 7.60 -52.48 -0.40 1.21 16 22 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 23 N -0.88 -25.74 13.29 55.43 0.74 -25.01 16 24 Si 0.91 20.57 29.54 -169.99 -5.02 15.55 16 25 H -0.27 -5.97 7.11 56.52 0.40 -5.56 16 26 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 27 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 28 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.10 0.94 7.86 -51.93 -0.41 0.53 16 33 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 34 H 0.14 0.61 8.06 -52.48 -0.42 0.18 16 35 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 36 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 37 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 38 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 39 H 0.39 6.72 8.32 -40.82 -0.34 6.38 16 40 H 0.03 0.85 8.14 -51.94 -0.42 0.43 16 41 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 377.07 15.07 5.68 5.68 Total: -1.00 -34.77 377.07 -8.55 -43.32 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -5.35 Total: 2.53 kcal Atomic # 6 Polarization: 5.36 SS G_CDS: -3.28 Total: 2.08 kcal Atomic # 7 Polarization: -40.20 SS G_CDS: 0.40 Total: -39.81 kcal Atomic # 8 Polarization: -28.38 SS G_CDS: -0.97 Total: -29.35 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.77 -8.55 -43.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324448978.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.859 kcal (2) G-P(sol) polarization free energy of solvation -34.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds