Wall clock time and date at job start Tue Mar 31 2020 17:51:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09000 * 109.46915 * 2 1 4 4 C 1.50691 * 109.47141 * 239.99671 * 2 1 3 5 5 H 1.08011 * 119.99994 * 245.64383 * 4 2 1 6 6 C 1.37871 * 120.00306 * 65.64237 * 4 2 1 7 7 N 1.31519 * 120.00387 * 197.14740 * 6 4 2 8 8 Si 1.86804 * 119.99901 * 17.42761 * 6 4 2 9 9 H 1.48495 * 109.47139 * 179.72427 * 8 6 4 10 10 H 1.48499 * 109.46650 * 299.72174 * 8 6 4 11 11 H 1.48501 * 109.46998 * 59.72245 * 8 6 4 12 12 C 1.50701 * 109.46677 * 119.99709 * 2 1 3 13 13 O 1.20823 * 120.00008 * 120.00691 * 12 2 1 14 14 O 1.34232 * 120.00224 * 299.99590 * 12 2 1 15 15 C 1.45193 * 117.00228 * 180.02562 * 14 12 2 16 16 C 1.50704 * 109.47265 * 180.02562 * 15 14 12 17 17 O 1.21288 * 119.99951 * 0.02562 * 16 15 14 18 18 C 1.46853 * 119.99820 * 179.97438 * 16 15 14 19 19 C 1.40045 * 120.27439 * 0.02562 * 18 16 15 20 20 C 1.36276 * 120.19015 * 179.97438 * 19 18 16 21 21 C 1.40008 * 120.64069 * 0.02562 * 20 19 18 22 22 C 1.38966 * 119.27525 * 359.97438 * 21 20 19 23 23 C 1.37641 * 120.57395 * 359.71449 * 22 21 20 24 24 C 1.51236 * 108.50040 * 179.97438 * 22 21 20 25 25 C 1.53735 * 104.48749 * 359.97438 * 24 22 21 26 26 N 1.39275 * 129.13702 * 179.97438 * 21 20 19 27 27 C 1.34773 * 124.90463 * 359.97438 * 26 21 20 28 28 O 1.21276 * 120.00508 * 180.02562 * 27 26 21 29 29 H 1.08998 * 109.46828 * 306.32149 * 1 2 3 30 30 H 1.08992 * 109.46594 * 66.32055 * 1 2 3 31 31 H 1.08996 * 109.46758 * 186.31975 * 1 2 3 32 32 H 0.97004 * 119.99724 * 355.22179 * 7 6 4 33 33 H 1.08997 * 109.47321 * 300.00748 * 15 14 12 34 34 H 1.09002 * 109.46934 * 60.00207 * 15 14 12 35 35 H 1.08002 * 119.90453 * 0.02562 * 19 18 16 36 36 H 1.07998 * 119.67664 * 179.97438 * 20 19 18 37 37 H 1.08006 * 120.07248 * 180.30700 * 23 22 21 38 38 H 1.09006 * 110.42872 * 241.24621 * 24 22 21 39 39 H 1.08998 * 110.53320 * 118.80682 * 24 22 21 40 40 H 1.09001 * 110.29591 * 241.06292 * 25 24 22 41 41 H 1.09010 * 110.29077 * 118.93868 * 25 24 22 42 42 H 1.08002 * 119.99738 * 0.02562 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2303 5 1 2.5761 -1.6387 -1.1338 6 6 1.7979 -0.1756 -2.4793 7 7 1.9235 -0.9277 -3.5509 8 14 1.3096 1.6194 -2.6500 9 1 1.1231 1.9472 -4.0862 10 1 0.0394 1.8584 -1.9187 11 1 2.3780 2.4793 -2.0806 12 6 2.0323 -0.7104 1.2305 13 8 2.7270 -1.6927 1.1198 14 8 1.7081 -0.2517 2.4497 15 6 2.2276 -0.9855 3.5897 16 6 1.7625 -0.3289 4.8640 17 8 1.0618 0.6599 4.8160 18 6 2.1569 -0.8870 6.1639 19 6 2.9654 -2.0289 6.2259 20 6 3.3308 -2.5450 7.4331 21 6 2.9050 -1.9448 8.6241 22 6 2.1027 -0.8117 8.5651 23 6 1.7329 -0.2782 7.3514 24 6 1.7893 -0.3715 9.9776 25 6 2.5121 -1.3948 10.8687 26 7 3.1686 -2.3181 9.9398 27 6 3.9176 -3.3771 10.3056 28 8 4.0893 -3.6214 11.4811 29 1 -0.3633 0.6087 0.8280 30 1 -0.3632 0.4127 -0.9411 31 1 -0.3633 -1.0214 0.1131 32 1 2.2477 -1.8382 -3.4691 33 1 1.8642 -2.0126 3.5570 34 1 3.3171 -0.9844 3.5567 35 1 3.3010 -2.5012 5.3145 36 1 3.9542 -3.4261 7.4713 37 1 1.1132 0.6057 7.3150 38 1 0.7145 -0.4037 10.1566 39 1 2.1747 0.6317 10.1598 40 1 1.7935 -1.9294 11.4899 41 1 3.2543 -0.8958 11.4920 42 1 4.3650 -4.0083 9.5520 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327503717.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:51:26 Heat of formation + Delta-G solvation = -142.770771 kcal Electronic energy + Delta-G solvation = -26739.113734 eV Core-core repulsion = 22648.799201 eV Total energy + Delta-G solvation = -4090.314533 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.27205 -41.61872 -40.53938 -39.49807 -37.46667 -37.18406 -35.96351 -33.92088 -33.34217 -31.95105 -30.61292 -29.40356 -26.86394 -25.84030 -25.21805 -24.20710 -23.48095 -21.53610 -21.45584 -20.85917 -19.56582 -19.10965 -18.59190 -18.01938 -17.68216 -17.31186 -17.24512 -17.03385 -16.27565 -15.99475 -15.85341 -15.53797 -15.19807 -15.17761 -14.78923 -14.73303 -14.27062 -14.21674 -13.91663 -13.81722 -13.76790 -13.59968 -13.26142 -13.08929 -13.02287 -12.99379 -12.38159 -12.06458 -12.05646 -11.82864 -11.60179 -11.42362 -11.37261 -11.27078 -11.02077 -10.87842 -10.41953 -10.02532 -9.00757 -8.82072 -6.42627 -0.58029 0.27767 1.01317 1.30271 1.51734 1.54381 1.59418 1.61497 1.67088 1.78323 2.50887 2.66640 2.84857 3.04614 3.33401 3.36237 3.67884 3.80131 3.91135 4.03776 4.05622 4.08482 4.13750 4.14484 4.25206 4.33834 4.40313 4.58202 4.61941 4.75765 4.82428 4.90877 4.90941 4.96340 5.06273 5.13712 5.17699 5.23138 5.31308 5.45220 5.65797 5.74255 6.03487 6.18350 6.35151 6.55103 6.68468 6.91221 7.36433 8.59978 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.032072 B = 0.002039 C = 0.001941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.836024 B =13729.681348 C =14424.994779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.021 3.979 3 H 0.075 0.925 4 C -0.606 4.606 5 H 0.028 0.972 6 C -0.015 4.015 7 N -0.929 5.929 8 Si 1.079 2.921 9 H -0.287 1.287 10 H -0.230 1.230 11 H -0.260 1.260 12 C 0.479 3.521 13 O -0.535 6.535 14 O -0.351 6.351 15 C 0.005 3.995 16 C 0.411 3.589 17 O -0.469 6.469 18 C -0.200 4.200 19 C -0.035 4.035 20 C -0.150 4.150 21 C 0.176 3.824 22 C -0.154 4.154 23 C -0.014 4.014 24 C -0.082 4.082 25 C 0.094 3.906 26 N -0.560 5.560 27 C 0.507 3.493 28 O -0.569 6.569 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.041 0.959 32 H 0.252 0.748 33 H 0.118 0.882 34 H 0.119 0.881 35 H 0.158 0.842 36 H 0.167 0.833 37 H 0.137 0.863 38 H 0.107 0.893 39 H 0.108 0.892 40 H 0.089 0.911 41 H 0.088 0.912 42 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.520 0.401 30.474 30.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.001 3.999 3 H 0.093 0.907 4 C -0.643 4.643 5 H 0.046 0.954 6 C -0.213 4.213 7 N -0.564 5.564 8 Si 0.898 3.102 9 H -0.213 1.213 10 H -0.154 1.154 11 H -0.185 1.185 12 C 0.324 3.676 13 O -0.424 6.424 14 O -0.268 6.268 15 C -0.069 4.069 16 C 0.290 3.710 17 O -0.345 6.345 18 C -0.202 4.202 19 C -0.054 4.054 20 C -0.170 4.170 21 C 0.079 3.921 22 C -0.157 4.157 23 C -0.033 4.033 24 C -0.118 4.118 25 C -0.028 4.028 26 N -0.284 5.284 27 C 0.281 3.719 28 O -0.444 6.444 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.136 0.864 34 H 0.137 0.863 35 H 0.176 0.824 36 H 0.184 0.816 37 H 0.155 0.845 38 H 0.126 0.874 39 H 0.126 0.874 40 H 0.107 0.893 41 H 0.107 0.893 42 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 0.104 1.469 30.163 30.199 hybrid contribution 0.926 -1.956 0.642 2.257 sum 1.030 -0.487 30.805 30.826 Atomic orbital electron populations 1.22050 0.93727 1.01312 1.02523 1.19052 0.96206 0.97438 0.87158 0.90733 1.21990 1.40781 1.09570 0.91995 0.95402 1.27337 0.93885 1.08886 0.91228 1.70998 1.43470 1.09570 1.32347 0.83686 0.79605 0.69901 0.76974 1.21311 1.15420 1.18481 1.24470 0.76165 0.82607 0.84362 1.90511 1.37146 1.27542 1.87223 1.86630 1.69937 1.55446 1.14744 1.23588 1.02183 0.97818 0.83355 1.22188 0.76961 0.82748 0.89151 1.90562 1.30391 1.23840 1.89699 1.19903 1.06949 1.00977 0.92360 1.21159 0.92509 0.92428 0.99303 1.20516 1.04613 1.03224 0.88674 1.18818 0.94303 0.93915 0.85049 1.20133 1.02307 0.97538 0.95723 1.20619 0.95303 0.98007 0.89366 1.21202 1.02854 0.99926 0.87864 1.22258 0.97295 0.90510 0.92687 1.46602 1.48003 1.28279 1.05515 1.23581 0.76238 0.79685 0.92359 1.90750 1.59723 1.70924 1.23042 0.91040 0.91446 0.94008 0.93916 0.86446 0.86316 0.82412 0.81571 0.84495 0.87449 0.87416 0.89318 0.89329 0.79540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.68 8.80 71.99 0.63 -5.05 16 2 C 0.02 0.99 2.32 -12.29 -0.03 0.96 16 3 H 0.08 3.26 6.80 -2.39 -0.02 3.25 16 4 C -0.61 -34.86 8.63 25.60 0.22 -34.64 16 5 H 0.03 1.83 7.02 -2.91 -0.02 1.81 16 6 C -0.01 -0.86 5.29 84.65 0.45 -0.41 16 7 N -0.93 -57.88 13.70 21.45 0.29 -57.59 16 8 Si 1.08 47.16 26.29 68.60 1.80 48.97 16 9 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 10 H -0.23 -8.59 5.76 99.48 0.57 -8.02 16 11 H -0.26 -10.46 7.11 99.48 0.71 -9.76 16 12 C 0.48 21.21 7.25 71.24 0.52 21.72 16 13 O -0.54 -26.27 15.22 21.97 0.33 -25.94 16 14 O -0.35 -12.92 9.68 -45.08 -0.44 -13.35 16 15 C 0.00 0.12 4.56 71.24 0.32 0.45 16 16 C 0.41 9.99 7.19 27.94 0.20 10.19 16 17 O -0.47 -14.74 16.50 15.74 0.26 -14.48 16 18 C -0.20 -3.45 5.87 -20.15 -0.12 -3.57 16 19 C -0.04 -0.42 9.40 22.25 0.21 -0.21 16 20 C -0.15 -1.28 9.67 22.24 0.21 -1.07 16 21 C 0.18 1.92 6.63 38.56 0.26 2.18 16 22 C -0.15 -1.87 6.22 -19.66 -0.12 -1.99 16 23 C -0.01 -0.22 9.60 22.56 0.22 0.00 16 24 C -0.08 -0.59 6.94 30.27 0.21 -0.38 16 25 C 0.09 0.84 7.05 86.63 0.61 1.45 16 26 N -0.56 -6.00 3.11 -644.42 -2.01 -8.01 16 27 C 0.51 5.59 11.94 129.79 1.55 7.14 16 28 O -0.57 -11.60 17.46 -3.02 -0.05 -11.65 16 29 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 30 H 0.07 2.76 4.88 -2.39 -0.01 2.74 16 31 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.25 16.12 8.73 -92.71 -0.81 15.31 16 33 H 0.12 2.71 8.08 -2.39 -0.02 2.69 16 34 H 0.12 2.71 8.08 -2.39 -0.02 2.69 16 35 H 0.16 1.34 7.05 -2.91 -0.02 1.32 16 36 H 0.17 0.30 7.40 -2.91 -0.02 0.28 16 37 H 0.14 2.20 7.65 -2.91 -0.02 2.18 16 38 H 0.11 0.54 8.14 -2.38 -0.02 0.52 16 39 H 0.11 0.54 8.14 -2.39 -0.02 0.52 16 40 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.09 0.75 8.14 -2.38 -0.02 0.73 16 42 H 0.19 0.33 7.33 -2.91 -0.02 0.31 16 Total: -1.00 -82.28 361.13 6.43 -75.85 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: 0.89 Total: 9.42 kcal Atomic # 6 Polarization: -8.57 SS G_CDS: 5.34 Total: -3.23 kcal Atomic # 7 Polarization: -63.88 SS G_CDS: -1.71 Total: -65.59 kcal Atomic # 8 Polarization: -65.52 SS G_CDS: 0.11 Total: -65.42 kcal Atomic # 14 Polarization: 47.16 SS G_CDS: 1.80 Total: 48.97 kcal Total: -82.28 6.43 -75.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327503717.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.918 kcal (2) G-P(sol) polarization free energy of solvation -82.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds