Wall clock time and date at job start Tue Mar 31 2020 17:51:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47144 * 2 1 4 4 C 1.50698 * 109.47336 * 120.00377 * 2 1 3 5 5 H 1.08004 * 119.99862 * 119.99626 * 4 2 1 6 6 C 1.37874 * 120.00016 * 299.99941 * 4 2 1 7 7 N 1.31508 * 120.00026 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99982 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47118 * 59.99815 * 8 6 4 10 10 H 1.48505 * 109.47020 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.46949 * 299.99851 * 8 6 4 12 12 C 1.50710 * 109.46889 * 240.00362 * 2 1 3 13 13 O 1.20819 * 119.99809 * 240.00172 * 12 2 1 14 14 O 1.34231 * 120.00007 * 59.99654 * 12 2 1 15 15 C 1.45191 * 116.99833 * 180.02562 * 14 12 2 16 16 C 1.50703 * 109.46982 * 180.02562 * 15 14 12 17 17 O 1.21289 * 120.00014 * 359.97438 * 16 15 14 18 18 C 1.46854 * 119.99928 * 180.02562 * 16 15 14 19 19 C 1.40051 * 120.27266 * 0.02562 * 18 16 15 20 20 C 1.36267 * 120.18705 * 180.25660 * 19 18 16 21 21 C 1.40016 * 120.64525 * 359.44289 * 20 19 18 22 22 C 1.38958 * 119.26999 * 0.55129 * 21 20 19 23 23 C 1.37652 * 120.57794 * 359.73123 * 22 21 20 24 24 C 1.51235 * 108.50477 * 179.73070 * 22 21 20 25 25 C 1.53751 * 104.48424 * 359.97438 * 24 22 21 26 26 N 1.39272 * 129.14245 * 180.22810 * 21 20 19 27 27 C 1.34776 * 124.89769 * 0.27625 * 26 21 20 28 28 O 1.21283 * 119.99942 * 180.02562 * 27 26 21 29 29 H 1.09001 * 109.47139 * 59.99589 * 1 2 3 30 30 H 1.08998 * 109.47144 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46988 * 299.99826 * 1 2 3 32 32 H 0.97002 * 120.00359 * 180.02562 * 7 6 4 33 33 H 1.09000 * 109.47478 * 60.00450 * 15 14 12 34 34 H 1.09000 * 109.47262 * 299.99750 * 15 14 12 35 35 H 1.08002 * 119.90230 * 359.97252 * 19 18 16 36 36 H 1.08006 * 119.67694 * 179.72563 * 20 19 18 37 37 H 1.07996 * 120.07114 * 179.97438 * 23 22 21 38 38 H 1.08997 * 110.43160 * 118.74725 * 24 22 21 39 39 H 1.08996 * 110.43135 * 241.25097 * 24 22 21 40 40 H 1.09000 * 110.29410 * 118.93746 * 25 24 22 41 41 H 1.09001 * 110.29375 * 241.06278 * 25 24 22 42 42 H 1.08003 * 120.00600 * 0.03489 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5886 1.1312 6 6 1.6993 -0.2395 2.4827 7 7 0.9429 0.8294 2.6034 8 14 2.3215 -1.1206 4.0078 9 1 3.8065 -1.1212 4.0079 10 1 1.8261 -0.4209 5.2204 11 1 1.8259 -2.5205 4.0075 12 6 2.0323 -0.7104 -1.2306 13 8 2.7269 -1.6927 -1.1198 14 8 1.7079 -0.2517 -2.4497 15 6 2.2266 -0.9862 -3.5897 16 6 1.7626 -0.3289 -4.8640 17 8 1.0632 0.6609 -4.8160 18 6 2.1563 -0.8874 -6.1639 19 6 2.9624 -2.0310 -6.2259 20 6 3.3310 -2.5448 -7.4330 21 6 2.9020 -1.9469 -8.6242 22 6 2.1022 -0.8122 -8.5651 23 6 1.7285 -0.2812 -7.3514 24 6 1.7903 -0.3707 -9.9776 25 6 2.5124 -1.3945 -10.8688 26 7 3.1649 -2.3206 -9.9398 27 6 3.9126 -3.3807 -10.3056 28 8 4.0846 -3.6247 -11.4811 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 0.7088 1.1610 3.4845 33 1 1.8623 -2.0130 -3.5567 34 1 3.3161 -0.9859 -3.5571 35 1 3.2965 -2.5043 -5.3145 36 1 3.9565 -3.4245 -7.4713 37 1 1.1070 0.6012 -7.3150 38 1 0.7156 -0.4005 -10.1571 39 1 2.1795 0.6314 -10.1577 40 1 1.7936 -1.9278 -11.4908 41 1 3.2557 -0.8962 -11.4912 42 1 4.3584 -4.0129 -9.5520 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327503719.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:51:33 Heat of formation + Delta-G solvation = -121.371291 kcal Electronic energy + Delta-G solvation = -26675.632828 eV Core-core repulsion = 22586.246246 eV Total energy + Delta-G solvation = -4089.386582 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.67853 -40.12300 -39.36089 -38.62006 -36.54529 -35.67560 -33.90261 -33.36986 -31.21343 -30.60440 -29.98907 -28.33581 -25.21052 -25.12725 -24.16414 -22.93108 -22.75172 -20.91245 -19.95370 -19.86844 -18.56429 -17.14853 -17.00536 -16.81246 -16.42687 -16.18793 -15.89195 -15.76362 -15.40548 -15.13521 -14.65414 -14.47977 -14.44044 -14.19578 -13.77042 -13.40157 -13.21984 -13.16207 -12.80253 -12.63943 -12.52588 -12.51696 -12.07925 -11.55217 -11.46774 -11.04791 -10.83705 -10.79869 -10.74492 -10.70113 -10.37461 -10.21652 -10.08431 -9.88140 -9.44943 -9.17774 -9.05951 -8.45456 -8.39718 -6.10781 -4.16909 0.16305 0.85293 1.78148 2.16636 2.31601 3.02463 3.22034 3.31852 3.32444 3.35011 3.40077 3.75216 3.84715 4.11703 4.13841 4.40755 4.43105 4.48471 4.60673 4.69358 4.82423 4.95979 5.03938 5.21065 5.23270 5.24046 5.26130 5.29007 5.41919 5.49887 5.70835 5.77297 5.87362 6.03809 6.25812 6.67784 6.72151 6.87914 6.88124 7.11242 7.21415 7.39372 7.43717 7.74015 7.93464 8.12793 8.76459 8.91119 9.48474 10.96442 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.031272 B = 0.001978 C = 0.001873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.161094 B =14152.067675 C =14942.039331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.059 3.941 3 H 0.066 0.934 4 C -0.514 4.514 5 H 0.075 0.925 6 C 0.061 3.939 7 N -0.891 5.891 8 Si 0.906 3.094 9 H -0.275 1.275 10 H -0.287 1.287 11 H -0.276 1.276 12 C 0.466 3.534 13 O -0.517 6.517 14 O -0.347 6.347 15 C 0.016 3.984 16 C 0.398 3.602 17 O -0.426 6.426 18 C -0.182 4.182 19 C -0.038 4.038 20 C -0.156 4.156 21 C 0.173 3.827 22 C -0.149 4.149 23 C -0.009 4.009 24 C -0.086 4.086 25 C 0.100 3.900 26 N -0.559 5.559 27 C 0.506 3.494 28 O -0.525 6.525 29 H 0.025 0.975 30 H 0.031 0.969 31 H 0.096 0.904 32 H 0.264 0.736 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.144 0.856 36 H 0.133 0.867 37 H 0.142 0.858 38 H 0.095 0.905 39 H 0.095 0.905 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.699 -4.214 -25.309 25.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.040 3.960 3 H 0.084 0.916 4 C -0.552 4.552 5 H 0.093 0.907 6 C -0.140 4.140 7 N -0.529 5.529 8 Si 0.734 3.266 9 H -0.201 1.201 10 H -0.212 1.212 11 H -0.201 1.201 12 C 0.311 3.689 13 O -0.404 6.404 14 O -0.265 6.265 15 C -0.059 4.059 16 C 0.274 3.726 17 O -0.298 6.298 18 C -0.184 4.184 19 C -0.056 4.056 20 C -0.177 4.177 21 C 0.076 3.924 22 C -0.152 4.152 23 C -0.027 4.027 24 C -0.123 4.123 25 C -0.021 4.021 26 N -0.284 5.284 27 C 0.278 3.722 28 O -0.398 6.398 29 H 0.045 0.955 30 H 0.050 0.950 31 H 0.115 0.885 32 H 0.074 0.926 33 H 0.117 0.883 34 H 0.117 0.883 35 H 0.161 0.839 36 H 0.151 0.849 37 H 0.159 0.841 38 H 0.113 0.887 39 H 0.113 0.887 40 H 0.104 0.896 41 H 0.104 0.896 42 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 2.645 -4.143 -25.938 26.400 hybrid contribution 0.517 -0.721 0.803 1.197 sum 3.162 -4.863 -25.135 25.796 Atomic orbital electron populations 1.21742 0.95472 1.00059 1.01945 1.18784 0.94983 0.97053 0.85175 0.91643 1.21075 1.32108 1.13292 0.88723 0.90668 1.24944 0.94904 0.95032 0.99141 1.69871 1.36301 1.22735 1.24001 0.86421 0.79250 0.79641 0.81322 1.20092 1.21228 1.20100 1.25526 0.76431 0.83216 0.83710 1.90491 1.36500 1.26760 1.86646 1.86746 1.70086 1.54970 1.14695 1.23051 1.00794 0.97126 0.84931 1.22068 0.78198 0.83755 0.88609 1.90579 1.28060 1.21924 1.89275 1.20176 1.04789 0.99415 0.94053 1.20982 0.93341 0.93296 0.98027 1.20191 1.05060 1.02729 0.89694 1.18638 0.94879 0.94167 0.84676 1.19946 1.02570 0.97410 0.95239 1.20633 0.95076 0.97970 0.89061 1.21149 1.02053 0.99545 0.89584 1.22129 0.97117 0.90333 0.92537 1.46458 1.48430 1.28025 1.05461 1.22774 0.77145 0.79958 0.92331 1.90759 1.58092 1.69989 1.20933 0.95546 0.95005 0.88514 0.92595 0.88296 0.88297 0.83852 0.84895 0.84052 0.88654 0.88659 0.89603 0.89594 0.83768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.21 8.90 37.16 0.33 -2.88 16 2 C 0.06 1.49 2.74 -92.92 -0.25 1.24 16 3 H 0.07 1.72 8.14 -51.93 -0.42 1.30 16 4 C -0.51 -14.23 8.37 -34.44 -0.29 -14.52 16 5 H 0.08 2.15 6.76 -52.48 -0.35 1.79 16 6 C 0.06 1.68 5.30 -17.82 -0.09 1.58 16 7 N -0.89 -24.69 11.32 55.43 0.63 -24.06 16 8 Si 0.91 21.23 29.54 -169.99 -5.02 16.21 16 9 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 10 H -0.29 -6.59 7.11 56.52 0.40 -6.18 16 11 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 12 C 0.47 10.71 7.25 36.01 0.26 10.97 16 13 O -0.52 -12.47 15.21 -18.74 -0.29 -12.75 16 14 O -0.35 -6.93 9.66 -45.91 -0.44 -7.37 16 15 C 0.02 0.23 4.56 36.01 0.16 0.40 16 16 C 0.40 5.29 7.19 -30.82 -0.22 5.07 16 17 O -0.43 -7.12 16.50 -14.11 -0.23 -7.35 16 18 C -0.18 -1.80 5.87 -105.06 -0.62 -2.41 16 19 C -0.04 -0.28 9.40 -39.61 -0.37 -0.66 16 20 C -0.16 -0.98 9.67 -39.63 -0.38 -1.36 16 21 C 0.17 1.23 6.63 -83.55 -0.55 0.68 16 22 C -0.15 -1.10 6.22 -104.31 -0.65 -1.75 16 23 C -0.01 -0.08 9.60 -39.13 -0.38 -0.45 16 24 C -0.09 -0.43 6.94 -27.23 -0.19 -0.62 16 25 C 0.10 0.56 7.05 -3.65 -0.03 0.54 16 26 N -0.56 -3.82 3.11 -117.61 -0.37 -4.18 16 27 C 0.51 3.53 11.94 54.05 0.65 4.17 16 28 O -0.53 -5.79 17.46 5.56 0.10 -5.69 16 29 H 0.03 0.56 8.11 -51.93 -0.42 0.14 16 30 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.10 2.48 6.07 -51.93 -0.32 2.16 16 32 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 33 H 0.10 1.26 8.08 -51.93 -0.42 0.84 16 34 H 0.10 1.26 8.08 -51.93 -0.42 0.84 16 35 H 0.14 0.86 7.05 -52.49 -0.37 0.49 16 36 H 0.13 0.47 7.41 -52.48 -0.39 0.08 16 37 H 0.14 1.24 7.65 -52.49 -0.40 0.83 16 38 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.10 0.37 8.14 -51.93 -0.42 -0.06 16 40 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.15 0.44 7.33 -52.48 -0.38 0.06 16 LS Contribution 365.43 15.07 5.51 5.51 Total: -1.00 -34.60 365.43 -7.89 -42.49 By element: Atomic # 1 Polarization: 2.35 SS G_CDS: -5.15 Total: -2.79 kcal Atomic # 6 Polarization: 2.63 SS G_CDS: -2.62 Total: 0.01 kcal Atomic # 7 Polarization: -28.51 SS G_CDS: 0.26 Total: -28.25 kcal Atomic # 8 Polarization: -32.31 SS G_CDS: -0.86 Total: -33.17 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.60 -7.89 -42.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327503719.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.886 kcal (2) G-P(sol) polarization free energy of solvation -34.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds