Wall clock time and date at job start Tue Mar 31 2020 17:51:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47144 * 2 1 4 4 C 1.50698 * 109.47336 * 120.00377 * 2 1 3 5 5 H 1.08004 * 119.99862 * 119.99626 * 4 2 1 6 6 C 1.37874 * 120.00016 * 299.99941 * 4 2 1 7 7 N 1.31508 * 120.00026 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99982 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47118 * 59.99815 * 8 6 4 10 10 H 1.48505 * 109.47020 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.46949 * 299.99851 * 8 6 4 12 12 C 1.50710 * 109.46889 * 240.00362 * 2 1 3 13 13 O 1.20819 * 119.99809 * 240.00172 * 12 2 1 14 14 O 1.34231 * 120.00007 * 59.99654 * 12 2 1 15 15 C 1.45191 * 116.99833 * 180.02562 * 14 12 2 16 16 C 1.50703 * 109.46982 * 180.02562 * 15 14 12 17 17 O 1.21289 * 120.00014 * 359.97438 * 16 15 14 18 18 C 1.46854 * 119.99928 * 180.02562 * 16 15 14 19 19 C 1.40051 * 120.27266 * 0.02562 * 18 16 15 20 20 C 1.36267 * 120.18705 * 180.25660 * 19 18 16 21 21 C 1.40016 * 120.64525 * 359.44289 * 20 19 18 22 22 C 1.38958 * 119.26999 * 0.55129 * 21 20 19 23 23 C 1.37652 * 120.57794 * 359.73123 * 22 21 20 24 24 C 1.51235 * 108.50477 * 179.73070 * 22 21 20 25 25 C 1.53751 * 104.48424 * 359.97438 * 24 22 21 26 26 N 1.39272 * 129.14245 * 180.22810 * 21 20 19 27 27 C 1.34776 * 124.89769 * 0.27625 * 26 21 20 28 28 O 1.21283 * 119.99942 * 180.02562 * 27 26 21 29 29 H 1.09001 * 109.47139 * 59.99589 * 1 2 3 30 30 H 1.08998 * 109.47144 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46988 * 299.99826 * 1 2 3 32 32 H 0.97002 * 120.00359 * 180.02562 * 7 6 4 33 33 H 1.09000 * 109.47478 * 60.00450 * 15 14 12 34 34 H 1.09000 * 109.47262 * 299.99750 * 15 14 12 35 35 H 1.08002 * 119.90230 * 359.97252 * 19 18 16 36 36 H 1.08006 * 119.67694 * 179.72563 * 20 19 18 37 37 H 1.07996 * 120.07114 * 179.97438 * 23 22 21 38 38 H 1.08997 * 110.43160 * 118.74725 * 24 22 21 39 39 H 1.08996 * 110.43135 * 241.25097 * 24 22 21 40 40 H 1.09000 * 110.29410 * 118.93746 * 25 24 22 41 41 H 1.09001 * 110.29375 * 241.06278 * 25 24 22 42 42 H 1.08003 * 120.00600 * 0.03489 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5886 1.1312 6 6 1.6993 -0.2395 2.4827 7 7 0.9429 0.8294 2.6034 8 14 2.3215 -1.1206 4.0078 9 1 3.8065 -1.1212 4.0079 10 1 1.8261 -0.4209 5.2204 11 1 1.8259 -2.5205 4.0075 12 6 2.0323 -0.7104 -1.2306 13 8 2.7269 -1.6927 -1.1198 14 8 1.7079 -0.2517 -2.4497 15 6 2.2266 -0.9862 -3.5897 16 6 1.7626 -0.3289 -4.8640 17 8 1.0632 0.6609 -4.8160 18 6 2.1563 -0.8874 -6.1639 19 6 2.9624 -2.0310 -6.2259 20 6 3.3310 -2.5448 -7.4330 21 6 2.9020 -1.9469 -8.6242 22 6 2.1022 -0.8122 -8.5651 23 6 1.7285 -0.2812 -7.3514 24 6 1.7903 -0.3707 -9.9776 25 6 2.5124 -1.3945 -10.8688 26 7 3.1649 -2.3206 -9.9398 27 6 3.9126 -3.3807 -10.3056 28 8 4.0846 -3.6247 -11.4811 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 0.7088 1.1610 3.4845 33 1 1.8623 -2.0130 -3.5567 34 1 3.3161 -0.9859 -3.5571 35 1 3.2965 -2.5043 -5.3145 36 1 3.9565 -3.4245 -7.4713 37 1 1.1070 0.6012 -7.3150 38 1 0.7156 -0.4005 -10.1571 39 1 2.1795 0.6314 -10.1577 40 1 1.7936 -1.9278 -11.4908 41 1 3.2557 -0.8962 -11.4912 42 1 4.3584 -4.0129 -9.5520 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327503719.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:51:32 Heat of formation + Delta-G solvation = -140.549685 kcal Electronic energy + Delta-G solvation = -26676.464466 eV Core-core repulsion = 22586.246246 eV Total energy + Delta-G solvation = -4090.218220 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.25313 -41.52855 -40.49693 -39.47526 -37.38136 -37.15976 -35.90883 -33.90448 -32.75431 -31.87985 -30.58733 -29.33359 -27.26929 -25.79511 -25.17986 -24.23863 -23.45877 -21.64634 -21.44316 -20.83733 -19.09141 -18.67614 -18.24831 -17.90448 -17.57914 -17.30428 -17.26042 -16.98061 -16.48295 -15.97843 -15.91531 -15.69972 -15.17415 -15.08218 -14.74565 -14.69370 -14.27183 -14.02521 -13.79698 -13.71193 -13.56160 -13.36194 -13.08197 -12.98570 -12.94965 -12.76800 -12.59832 -12.28760 -12.04805 -12.02785 -11.74969 -11.40708 -11.35528 -11.20690 -11.10144 -10.81308 -10.51443 -10.00723 -8.99068 -8.17669 -6.31678 -0.55864 0.29633 1.03813 1.40726 1.44856 1.47560 1.53867 1.63547 1.65209 1.70831 2.44459 2.68691 2.90394 3.12397 3.35041 3.37850 3.69782 3.83441 3.93135 4.09034 4.10839 4.11351 4.16874 4.25869 4.27856 4.37246 4.59467 4.69119 4.76932 4.90614 4.91624 4.91694 4.97569 4.99705 5.15393 5.19492 5.25786 5.36386 5.44081 5.67703 5.69289 5.88479 6.10117 6.20309 6.38946 6.70220 6.74893 7.01196 7.37125 8.88685 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.031272 B = 0.001978 C = 0.001873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.161094 B =14152.067675 C =14942.039331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.048 3.952 3 H 0.048 0.952 4 C -0.536 4.536 5 H 0.062 0.938 6 C 0.019 3.981 7 N -0.911 5.911 8 Si 0.967 3.033 9 H -0.272 1.272 10 H -0.277 1.277 11 H -0.272 1.272 12 C 0.476 3.524 13 O -0.532 6.532 14 O -0.356 6.356 15 C 0.005 3.995 16 C 0.408 3.592 17 O -0.473 6.473 18 C -0.200 4.200 19 C -0.034 4.034 20 C -0.149 4.149 21 C 0.176 3.824 22 C -0.155 4.155 23 C -0.016 4.016 24 C -0.082 4.082 25 C 0.094 3.906 26 N -0.560 5.560 27 C 0.507 3.493 28 O -0.570 6.570 29 H 0.042 0.958 30 H 0.032 0.968 31 H 0.077 0.923 32 H 0.268 0.732 33 H 0.121 0.879 34 H 0.121 0.879 35 H 0.161 0.839 36 H 0.169 0.831 37 H 0.134 0.866 38 H 0.107 0.893 39 H 0.107 0.893 40 H 0.088 0.912 41 H 0.089 0.911 42 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.641 -5.815 -26.205 27.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.029 3.971 3 H 0.066 0.934 4 C -0.574 4.574 5 H 0.080 0.920 6 C -0.181 4.181 7 N -0.549 5.549 8 Si 0.792 3.208 9 H -0.197 1.197 10 H -0.202 1.202 11 H -0.197 1.197 12 C 0.321 3.679 13 O -0.421 6.421 14 O -0.274 6.274 15 C -0.069 4.069 16 C 0.287 3.713 17 O -0.349 6.349 18 C -0.202 4.202 19 C -0.052 4.052 20 C -0.169 4.169 21 C 0.079 3.921 22 C -0.158 4.158 23 C -0.035 4.035 24 C -0.119 4.119 25 C -0.027 4.027 26 N -0.284 5.284 27 C 0.282 3.718 28 O -0.445 6.445 29 H 0.061 0.939 30 H 0.051 0.949 31 H 0.096 0.904 32 H 0.077 0.923 33 H 0.138 0.862 34 H 0.138 0.862 35 H 0.178 0.822 36 H 0.186 0.814 37 H 0.152 0.848 38 H 0.125 0.875 39 H 0.125 0.875 40 H 0.107 0.893 41 H 0.107 0.893 42 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 3.584 -5.738 -26.851 27.690 hybrid contribution 0.246 -0.229 0.914 0.974 sum 3.830 -5.967 -25.937 26.888 Atomic orbital electron populations 1.21564 0.94620 0.99984 1.01748 1.18692 0.95796 0.96219 0.86369 0.93430 1.21222 1.32656 1.13348 0.90171 0.91976 1.25704 0.94928 0.95684 1.01785 1.69970 1.36647 1.23513 1.24794 0.85472 0.78744 0.78635 0.77975 1.19742 1.20249 1.19688 1.24799 0.76100 0.82646 0.84330 1.90466 1.37125 1.27282 1.87206 1.86660 1.70066 1.55605 1.15034 1.23583 1.02210 0.97826 0.83310 1.22286 0.76865 0.82751 0.89388 1.90569 1.30575 1.24021 1.89773 1.19914 1.06977 1.01031 0.92245 1.21173 0.92404 0.92259 0.99410 1.20530 1.04489 1.03302 0.88581 1.18815 0.94304 0.93869 0.85096 1.20123 1.02397 0.97602 0.95647 1.20612 0.95355 0.98024 0.89494 1.21206 1.02833 0.99918 0.87933 1.22250 0.97345 0.90439 0.92667 1.46599 1.48160 1.28139 1.05483 1.23601 0.76173 0.79697 0.92373 1.90751 1.59663 1.71013 1.23058 0.93914 0.94895 0.90395 0.92310 0.86168 0.86174 0.82159 0.81373 0.84773 0.87507 0.87513 0.89324 0.89310 0.79428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.86 8.90 71.98 0.64 -5.22 16 2 C 0.05 2.49 2.74 -12.28 -0.03 2.46 16 3 H 0.05 2.60 8.14 -2.39 -0.02 2.58 16 4 C -0.54 -30.04 8.37 25.60 0.21 -29.83 16 5 H 0.06 3.58 6.76 -2.91 -0.02 3.56 16 6 C 0.02 1.03 5.30 84.65 0.45 1.48 16 7 N -0.91 -50.83 11.32 21.45 0.24 -50.58 16 8 Si 0.97 43.30 29.54 68.60 2.03 45.33 16 9 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 10 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 11 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 12 C 0.48 21.95 7.25 71.24 0.52 22.46 16 13 O -0.53 -25.47 15.21 21.98 0.33 -25.14 16 14 O -0.36 -14.21 9.66 -45.07 -0.44 -14.64 16 15 C 0.00 0.13 4.56 71.24 0.32 0.45 16 16 C 0.41 10.72 7.19 27.94 0.20 10.92 16 17 O -0.47 -16.23 16.50 15.74 0.26 -15.97 16 18 C -0.20 -3.69 5.87 -20.15 -0.12 -3.81 16 19 C -0.03 -0.41 9.40 22.25 0.21 -0.20 16 20 C -0.15 -1.31 9.67 22.24 0.21 -1.09 16 21 C 0.18 2.01 6.63 38.56 0.26 2.26 16 22 C -0.15 -2.02 6.22 -19.66 -0.12 -2.14 16 23 C -0.02 -0.27 9.60 22.56 0.22 -0.06 16 24 C -0.08 -0.67 6.94 30.27 0.21 -0.46 16 25 C 0.09 0.89 7.05 86.63 0.61 1.51 16 26 N -0.56 -6.20 3.11 -644.40 -2.01 -8.21 16 27 C 0.51 5.67 11.94 129.79 1.55 7.22 16 28 O -0.57 -11.69 17.46 -3.04 -0.05 -11.74 16 29 H 0.04 1.86 8.11 -2.39 -0.02 1.84 16 30 H 0.03 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.08 4.06 6.07 -2.39 -0.01 4.04 16 32 H 0.27 14.11 8.31 -92.71 -0.77 13.34 16 33 H 0.12 2.85 8.08 -2.39 -0.02 2.83 16 34 H 0.12 2.85 8.08 -2.39 -0.02 2.83 16 35 H 0.16 1.37 7.05 -2.91 -0.02 1.35 16 36 H 0.17 0.28 7.41 -2.91 -0.02 0.26 16 37 H 0.13 2.41 7.65 -2.91 -0.02 2.38 16 38 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 39 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 40 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 42 H 0.19 0.32 7.33 -2.91 -0.02 0.30 16 Total: -1.00 -75.88 365.43 6.76 -69.12 By element: Atomic # 1 Polarization: 4.85 SS G_CDS: 1.06 Total: 5.90 kcal Atomic # 6 Polarization: 0.60 SS G_CDS: 5.34 Total: 5.94 kcal Atomic # 7 Polarization: -57.03 SS G_CDS: -1.76 Total: -58.79 kcal Atomic # 8 Polarization: -67.60 SS G_CDS: 0.11 Total: -67.49 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Total: -75.88 6.76 -69.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327503719.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.433 kcal (2) G-P(sol) polarization free energy of solvation -75.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds