Wall clock time and date at job start Tue Mar 31 2020 16:15:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34835 * 126.63085 * 2 1 4 4 C 1.47653 * 125.45180 * 359.97438 * 3 2 1 5 5 O 1.21587 * 120.00209 * 359.72329 * 4 3 2 6 6 N 1.34777 * 119.99661 * 179.72102 * 4 3 2 7 7 C 1.39916 * 119.99779 * 175.47642 * 6 4 3 8 8 C 1.38943 * 120.00076 * 35.14240 * 7 6 4 9 9 C 1.37993 * 119.99365 * 180.02562 * 8 7 6 10 10 C 1.38915 * 120.00593 * 0.02562 * 9 8 7 11 11 O 1.35780 * 119.99593 * 179.97438 * 10 9 8 12 12 C 1.34810 * 117.00197 * 5.36258 * 11 10 9 13 13 H 1.07999 * 120.00276 * 354.95482 * 12 11 10 14 14 C 1.38626 * 119.99931 * 174.96173 * 12 11 10 15 15 N 1.31574 * 120.00313 * 359.97438 * 14 12 11 16 16 Si 1.86808 * 120.00059 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47185 * 59.99590 * 16 14 12 18 18 H 1.48494 * 109.47447 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47038 * 299.99983 * 16 14 12 20 20 C 1.38908 * 120.00779 * 0.25755 * 10 9 8 21 21 C 1.38002 * 119.99864 * 359.48034 * 20 10 9 22 22 C 1.47186 * 109.09190 * 179.73183 * 3 2 1 23 23 O 1.21491 * 125.01960 * 180.21584 * 22 3 2 24 24 O 1.34479 * 109.96121 * 0.24219 * 22 3 2 25 25 C 1.45451 * 107.98773 * 359.97438 * 24 22 3 26 26 C 1.52997 * 110.10049 * 119.19371 * 25 24 22 27 27 C 1.53000 * 110.10032 * 240.75228 * 25 24 22 28 28 H 1.09002 * 109.47492 * 0.03157 * 1 2 3 29 29 H 1.09000 * 109.46746 * 120.03061 * 1 2 3 30 30 H 1.09000 * 109.47399 * 240.02390 * 1 2 3 31 31 H 0.96997 * 120.00302 * 355.48016 * 6 4 3 32 32 H 1.07993 * 120.00564 * 359.97438 * 8 7 6 33 33 H 1.08007 * 119.99836 * 179.97438 * 9 8 7 34 34 H 0.97005 * 119.99980 * 179.97438 * 15 14 12 35 35 H 1.07993 * 120.00345 * 179.72567 * 20 10 9 36 36 H 1.08004 * 119.99946 * 180.23741 * 21 20 10 37 37 H 1.09003 * 109.47042 * 61.45670 * 26 25 24 38 38 H 1.09000 * 109.46730 * 181.45375 * 26 25 24 39 39 H 1.08997 * 109.47312 * 301.45261 * 26 25 24 40 40 H 1.08993 * 109.47174 * 58.54690 * 27 25 24 41 41 H 1.09001 * 109.46886 * 178.54639 * 27 25 24 42 42 H 1.09001 * 109.47220 * 298.54148 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3115 1.0820 0.0000 4 6 1.8572 2.4870 -0.0005 5 8 0.6683 2.7415 -0.0061 6 7 2.7606 3.4872 0.0052 7 6 2.3334 4.8161 -0.0909 8 6 1.1425 5.2080 0.5079 9 6 0.7211 6.5186 0.4126 10 6 1.4872 7.4459 -0.2823 11 8 1.0721 8.7353 -0.3764 12 6 -0.0320 9.0750 0.3185 13 1 -0.5903 8.3181 0.8493 14 6 -0.4509 10.3961 0.3515 15 7 0.2293 11.3184 -0.2948 16 14 -1.9813 10.8669 1.3138 17 1 -1.7949 10.5137 2.7441 18 1 -2.2128 12.3286 1.1915 19 1 -3.1525 10.1326 0.7713 20 6 2.6749 7.0529 -0.8860 21 6 3.0993 5.7436 -0.7863 22 6 3.7149 0.6385 0.0065 23 8 4.6795 1.3771 0.0118 24 8 3.7718 -0.7051 0.0051 25 6 2.4086 -1.2123 -0.0017 26 6 2.1659 -2.0510 -1.2582 27 6 2.1549 -2.0552 1.2497 28 1 -0.3634 1.0277 -0.0006 29 1 -0.3633 -0.5143 -0.8897 30 1 -0.3634 -0.5135 0.8902 31 1 3.7068 3.2858 0.0759 32 1 0.5462 4.4870 1.0471 33 1 -0.2049 6.8233 0.8777 34 1 -0.0640 12.2427 -0.2719 35 1 3.2682 7.7729 -1.4300 36 1 4.0248 5.4389 -1.2524 37 1 2.8427 -2.9055 -1.2609 38 1 1.1348 -2.4042 -1.2656 39 1 2.3474 -1.4408 -2.1429 40 1 2.3285 -1.4480 2.1380 41 1 1.1237 -2.4084 1.2469 42 1 2.8316 -2.9097 1.2557 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338088199.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:15:22 Heat of formation + Delta-G solvation = -88.168859 kcal Electronic energy + Delta-G solvation = -27498.442270 eV Core-core repulsion = 23410.495453 eV Total energy + Delta-G solvation = -4087.946817 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.21202 -39.99427 -38.62437 -38.25127 -36.56449 -35.05750 -33.95091 -32.78090 -32.15957 -30.18534 -29.35050 -28.16001 -27.77950 -25.35537 -24.12306 -23.40622 -22.25476 -21.21885 -20.50835 -19.88809 -18.13045 -17.63673 -17.11962 -16.86223 -16.59941 -16.42382 -15.34492 -15.31071 -15.00077 -14.51183 -14.39311 -14.21774 -14.07762 -13.77360 -13.68894 -13.56121 -13.53704 -13.00378 -12.92738 -12.79743 -12.78314 -12.54453 -12.41148 -11.97170 -11.74657 -11.56289 -11.50629 -11.38733 -11.00007 -10.78867 -10.68184 -10.43920 -9.93910 -9.79571 -9.67392 -9.17231 -8.68321 -8.18510 -6.92337 -6.42969 -4.00456 0.09300 1.89061 2.21068 2.32578 2.42732 3.02229 3.14435 3.15593 3.19184 3.24148 3.33777 3.57934 3.98867 4.00037 4.09553 4.42783 4.58934 4.73575 4.86101 4.92531 4.96706 4.99560 5.08146 5.10588 5.12656 5.28906 5.32811 5.46757 5.46909 5.71938 5.75374 5.87586 6.13114 6.17896 6.23482 6.35067 6.75134 6.87218 6.98929 7.04627 7.09848 7.30957 7.45213 7.67586 7.80296 8.01996 8.29405 9.02540 9.72169 10.74839 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.024852 B = 0.002397 C = 0.002244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.412243 B =11678.064370 C =12477.399519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.011 3.989 3 C -0.270 4.270 4 C 0.575 3.425 5 O -0.521 6.521 6 N -0.644 5.644 7 C 0.030 3.970 8 C -0.063 4.063 9 C -0.221 4.221 10 C 0.148 3.852 11 O -0.175 6.175 12 C -0.391 4.391 13 H 0.092 0.908 14 C 0.039 3.961 15 N -0.863 5.863 16 Si 0.941 3.059 17 H -0.270 1.270 18 H -0.278 1.278 19 H -0.270 1.270 20 C -0.177 4.177 21 C -0.088 4.088 22 C 0.513 3.487 23 O -0.450 6.450 24 O -0.311 6.311 25 C 0.110 3.890 26 C -0.149 4.149 27 C -0.149 4.149 28 H 0.118 0.882 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.412 0.588 32 H 0.126 0.874 33 H 0.131 0.869 34 H 0.270 0.730 35 H 0.123 0.877 36 H 0.116 0.884 37 H 0.082 0.918 38 H 0.088 0.912 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.088 0.912 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.557 -28.271 1.244 28.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.008 3.992 3 C -0.275 4.275 4 C 0.362 3.638 5 O -0.399 6.399 6 N -0.289 5.289 7 C -0.062 4.062 8 C -0.082 4.082 9 C -0.241 4.241 10 C 0.094 3.906 11 O -0.079 6.079 12 C -0.467 4.467 13 H 0.109 0.891 14 C -0.165 4.165 15 N -0.497 5.497 16 Si 0.766 3.234 17 H -0.195 1.195 18 H -0.203 1.203 19 H -0.195 1.195 20 C -0.197 4.197 21 C -0.108 4.108 22 C 0.355 3.645 23 O -0.336 6.336 24 O -0.227 6.227 25 C 0.072 3.928 26 C -0.206 4.206 27 C -0.206 4.206 28 H 0.136 0.864 29 H 0.109 0.891 30 H 0.109 0.891 31 H 0.251 0.749 32 H 0.143 0.857 33 H 0.149 0.851 34 H 0.080 0.920 35 H 0.141 0.859 36 H 0.134 0.866 37 H 0.101 0.899 38 H 0.107 0.893 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.107 0.893 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 1.481 -27.439 1.065 27.500 hybrid contribution -0.176 0.104 0.494 0.535 sum 1.306 -27.335 1.559 27.411 Atomic orbital electron populations 1.21114 0.86139 1.08115 1.03264 1.24171 0.98161 0.92824 0.83998 1.22386 0.94747 0.95998 1.14325 1.17199 0.85962 0.83077 0.77555 1.90707 1.15712 1.83223 1.50307 1.43233 1.10729 1.04436 1.70522 1.17270 0.99218 0.82615 1.07112 1.20839 0.94970 0.95357 0.97075 1.21088 1.02900 0.92894 1.07235 1.19419 0.92268 0.85802 0.93133 1.83975 1.42226 1.20710 1.60960 1.21290 1.01827 0.93996 1.29585 0.89052 1.25285 0.99316 0.94468 0.97446 1.70039 1.38477 1.01771 1.39461 0.85781 0.80157 0.77953 0.79553 1.19491 1.20297 1.19473 1.19994 0.96949 0.95672 1.07087 1.20404 0.99465 0.92544 0.98434 1.20846 0.88991 0.81432 0.73212 1.90853 1.42604 1.54589 1.45516 1.87433 1.29289 1.21406 1.84563 1.22144 0.77538 0.93211 0.99885 1.22034 1.03917 1.00086 0.94545 1.22038 1.03878 1.00051 0.94630 0.86365 0.89089 0.89097 0.74932 0.85656 0.85137 0.91974 0.85937 0.86571 0.89878 0.89298 0.90966 0.90982 0.89296 0.89893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.87 10.27 36.00 0.37 -0.50 16 2 C 0.01 0.09 5.13 -100.37 -0.51 -0.42 16 3 C -0.27 -3.24 6.16 -103.63 -0.64 -3.88 16 4 C 0.57 8.93 7.66 -12.42 -0.10 8.83 16 5 O -0.52 -9.03 11.73 5.29 0.06 -8.97 16 6 N -0.64 -10.57 5.32 -10.73 -0.06 -10.63 16 7 C 0.03 0.58 6.30 -83.65 -0.53 0.05 16 8 C -0.06 -1.29 8.69 -39.41 -0.34 -1.63 16 9 C -0.22 -5.05 9.16 -39.42 -0.36 -5.42 16 10 C 0.15 3.66 6.65 -39.08 -0.26 3.40 16 11 O -0.18 -5.06 9.75 0.02 0.00 -5.06 16 12 C -0.39 -11.04 9.48 30.88 0.29 -10.75 16 13 H 0.09 2.39 5.20 -52.49 -0.27 2.12 16 14 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 15 N -0.86 -25.46 13.67 55.48 0.76 -24.70 16 16 Si 0.94 20.72 29.55 -169.99 -5.02 15.70 16 17 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 18 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 19 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 20 C -0.18 -3.82 9.98 -39.42 -0.39 -4.22 16 21 C -0.09 -1.67 9.96 -39.41 -0.39 -2.06 16 22 C 0.51 6.45 8.53 34.36 0.29 6.74 16 23 O -0.45 -6.76 15.87 -18.92 -0.30 -7.07 16 24 O -0.31 -3.20 10.58 -39.53 -0.42 -3.62 16 25 C 0.11 0.73 1.38 -91.59 -0.13 0.60 16 26 C -0.15 -0.63 8.94 37.16 0.33 -0.30 16 27 C -0.15 -0.62 8.91 37.16 0.33 -0.29 16 28 H 0.12 1.19 5.37 -51.93 -0.28 0.91 16 29 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.41 6.25 6.52 -40.82 -0.27 5.98 16 32 H 0.13 2.48 6.22 -52.49 -0.33 2.15 16 33 H 0.13 2.96 5.63 -52.48 -0.30 2.67 16 34 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 35 H 0.12 2.50 8.06 -52.49 -0.42 2.08 16 36 H 0.12 1.84 8.06 -52.48 -0.42 1.42 16 37 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 38 H 0.09 0.18 8.14 -51.93 -0.42 -0.25 16 39 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 40 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 42 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 LS Contribution 359.00 15.07 5.41 5.41 Total: -1.00 -34.20 359.00 -6.50 -40.70 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: -4.80 Total: 7.08 kcal Atomic # 6 Polarization: -6.72 SS G_CDS: -2.13 Total: -8.85 kcal Atomic # 7 Polarization: -36.03 SS G_CDS: 0.70 Total: -35.33 kcal Atomic # 8 Polarization: -24.06 SS G_CDS: -0.66 Total: -24.71 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.20 -6.50 -40.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338088199.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.472 kcal (2) G-P(sol) polarization free energy of solvation -34.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds