Wall clock time and date at job start Tue Mar 31 2020 16:15:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34835 * 126.63085 * 2 1 4 4 C 1.47653 * 125.45180 * 359.97438 * 3 2 1 5 5 O 1.21587 * 120.00209 * 359.72329 * 4 3 2 6 6 N 1.34777 * 119.99661 * 179.72102 * 4 3 2 7 7 C 1.39916 * 119.99779 * 175.47642 * 6 4 3 8 8 C 1.38943 * 120.00076 * 35.14240 * 7 6 4 9 9 C 1.37993 * 119.99365 * 180.02562 * 8 7 6 10 10 C 1.38915 * 120.00593 * 0.02562 * 9 8 7 11 11 O 1.35780 * 119.99593 * 179.97438 * 10 9 8 12 12 C 1.34810 * 117.00197 * 5.36258 * 11 10 9 13 13 H 1.07999 * 120.00276 * 354.95482 * 12 11 10 14 14 C 1.38626 * 119.99931 * 174.96173 * 12 11 10 15 15 N 1.31574 * 120.00313 * 359.97438 * 14 12 11 16 16 Si 1.86808 * 120.00059 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47185 * 59.99590 * 16 14 12 18 18 H 1.48494 * 109.47447 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47038 * 299.99983 * 16 14 12 20 20 C 1.38908 * 120.00779 * 0.25755 * 10 9 8 21 21 C 1.38002 * 119.99864 * 359.48034 * 20 10 9 22 22 C 1.47186 * 109.09190 * 179.73183 * 3 2 1 23 23 O 1.21491 * 125.01960 * 180.21584 * 22 3 2 24 24 O 1.34479 * 109.96121 * 0.24219 * 22 3 2 25 25 C 1.45451 * 107.98773 * 359.97438 * 24 22 3 26 26 C 1.52997 * 110.10049 * 119.19371 * 25 24 22 27 27 C 1.53000 * 110.10032 * 240.75228 * 25 24 22 28 28 H 1.09002 * 109.47492 * 0.03157 * 1 2 3 29 29 H 1.09000 * 109.46746 * 120.03061 * 1 2 3 30 30 H 1.09000 * 109.47399 * 240.02390 * 1 2 3 31 31 H 0.96997 * 120.00302 * 355.48016 * 6 4 3 32 32 H 1.07993 * 120.00564 * 359.97438 * 8 7 6 33 33 H 1.08007 * 119.99836 * 179.97438 * 9 8 7 34 34 H 0.97005 * 119.99980 * 179.97438 * 15 14 12 35 35 H 1.07993 * 120.00345 * 179.72567 * 20 10 9 36 36 H 1.08004 * 119.99946 * 180.23741 * 21 20 10 37 37 H 1.09003 * 109.47042 * 61.45670 * 26 25 24 38 38 H 1.09000 * 109.46730 * 181.45375 * 26 25 24 39 39 H 1.08997 * 109.47312 * 301.45261 * 26 25 24 40 40 H 1.08993 * 109.47174 * 58.54690 * 27 25 24 41 41 H 1.09001 * 109.46886 * 178.54639 * 27 25 24 42 42 H 1.09001 * 109.47220 * 298.54148 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3115 1.0820 0.0000 4 6 1.8572 2.4870 -0.0005 5 8 0.6683 2.7415 -0.0061 6 7 2.7606 3.4872 0.0052 7 6 2.3334 4.8161 -0.0909 8 6 1.1425 5.2080 0.5079 9 6 0.7211 6.5186 0.4126 10 6 1.4872 7.4459 -0.2823 11 8 1.0721 8.7353 -0.3764 12 6 -0.0320 9.0750 0.3185 13 1 -0.5903 8.3181 0.8493 14 6 -0.4509 10.3961 0.3515 15 7 0.2293 11.3184 -0.2948 16 14 -1.9813 10.8669 1.3138 17 1 -1.7949 10.5137 2.7441 18 1 -2.2128 12.3286 1.1915 19 1 -3.1525 10.1326 0.7713 20 6 2.6749 7.0529 -0.8860 21 6 3.0993 5.7436 -0.7863 22 6 3.7149 0.6385 0.0065 23 8 4.6795 1.3771 0.0118 24 8 3.7718 -0.7051 0.0051 25 6 2.4086 -1.2123 -0.0017 26 6 2.1659 -2.0510 -1.2582 27 6 2.1549 -2.0552 1.2497 28 1 -0.3634 1.0277 -0.0006 29 1 -0.3633 -0.5143 -0.8897 30 1 -0.3634 -0.5135 0.8902 31 1 3.7068 3.2858 0.0759 32 1 0.5462 4.4870 1.0471 33 1 -0.2049 6.8233 0.8777 34 1 -0.0640 12.2427 -0.2719 35 1 3.2682 7.7729 -1.4300 36 1 4.0248 5.4389 -1.2524 37 1 2.8427 -2.9055 -1.2609 38 1 1.1348 -2.4042 -1.2656 39 1 2.3474 -1.4408 -2.1429 40 1 2.3285 -1.4480 2.1380 41 1 1.1237 -2.4084 1.2469 42 1 2.8316 -2.9097 1.2557 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001338088199.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:15:18 Heat of formation + Delta-G solvation = -110.393887 kcal Electronic energy + Delta-G solvation = -27499.406019 eV Core-core repulsion = 23410.495453 eV Total energy + Delta-G solvation = -4088.910566 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 3.03 seconds Orbital eigenvalues (eV) -43.02167 -41.41421 -40.31962 -39.16293 -38.23862 -35.83950 -35.44628 -34.18719 -33.40087 -31.91236 -30.33124 -29.14697 -28.46195 -27.32490 -25.09252 -24.36830 -23.91831 -22.71403 -21.33741 -21.06143 -19.94607 -19.18283 -18.34062 -18.05552 -17.65711 -17.60574 -16.52691 -16.31234 -16.24915 -16.06170 -15.66037 -15.51179 -15.42268 -15.12488 -14.78237 -14.67995 -14.42212 -14.27943 -14.14735 -13.61085 -13.58310 -13.33351 -13.26341 -13.20848 -13.08521 -12.83349 -12.70349 -12.59910 -12.44336 -12.14756 -11.99976 -11.62748 -11.45444 -11.17677 -10.87371 -10.74843 -10.55468 -9.89035 -8.67973 -8.46994 -6.14234 -0.70786 0.44725 0.50755 1.05049 1.35576 1.46096 1.51826 1.62091 2.04001 2.10253 2.18435 2.46967 2.74591 2.79316 3.12567 3.47201 3.49534 3.54373 3.67489 3.94920 4.07188 4.07868 4.25783 4.43878 4.57749 4.63457 4.64615 4.66128 4.66537 4.68371 4.73132 4.85173 5.04757 5.06082 5.10660 5.19608 5.27094 5.32460 5.39675 5.43776 5.55267 5.65410 6.00662 6.07604 6.09354 6.36837 6.96682 7.00513 7.75365 8.75500 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.024852 B = 0.002397 C = 0.002244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.412243 B =11678.064370 C =12477.399519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.061 3.939 3 C -0.317 4.317 4 C 0.577 3.423 5 O -0.543 6.543 6 N -0.649 5.649 7 C 0.053 3.947 8 C -0.069 4.069 9 C -0.224 4.224 10 C 0.111 3.889 11 O -0.225 6.225 12 C -0.416 4.416 13 H 0.100 0.900 14 C -0.021 4.021 15 N -0.918 5.918 16 Si 1.018 2.982 17 H -0.258 1.258 18 H -0.270 1.270 19 H -0.258 1.258 20 C -0.178 4.178 21 C -0.081 4.081 22 C 0.515 3.485 23 O -0.490 6.490 24 O -0.318 6.318 25 C 0.102 3.898 26 C -0.148 4.148 27 C -0.148 4.148 28 H 0.085 0.915 29 H 0.126 0.874 30 H 0.127 0.873 31 H 0.420 0.580 32 H 0.134 0.866 33 H 0.125 0.875 34 H 0.273 0.727 35 H 0.129 0.871 36 H 0.154 0.846 37 H 0.095 0.905 38 H 0.122 0.878 39 H 0.059 0.941 40 H 0.060 0.940 41 H 0.122 0.878 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.368 -32.862 1.788 32.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.058 3.942 3 C -0.322 4.322 4 C 0.367 3.633 5 O -0.423 6.423 6 N -0.295 5.295 7 C -0.040 4.040 8 C -0.089 4.089 9 C -0.244 4.244 10 C 0.060 3.940 11 O -0.131 6.131 12 C -0.492 4.492 13 H 0.118 0.882 14 C -0.219 4.219 15 N -0.556 5.556 16 Si 0.837 3.163 17 H -0.182 1.182 18 H -0.194 1.194 19 H -0.182 1.182 20 C -0.198 4.198 21 C -0.101 4.101 22 C 0.360 3.640 23 O -0.379 6.379 24 O -0.234 6.234 25 C 0.066 3.934 26 C -0.205 4.205 27 C -0.205 4.205 28 H 0.103 0.897 29 H 0.144 0.856 30 H 0.145 0.855 31 H 0.260 0.740 32 H 0.152 0.848 33 H 0.143 0.857 34 H 0.082 0.918 35 H 0.147 0.853 36 H 0.172 0.828 37 H 0.114 0.886 38 H 0.140 0.860 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.141 0.859 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 0.310 -32.134 1.609 32.176 hybrid contribution 0.257 1.005 0.287 1.076 sum 0.567 -31.129 1.897 31.192 Atomic orbital electron populations 1.21304 0.84342 1.07012 1.06409 1.24756 0.99233 0.92507 0.77699 1.21940 0.95277 0.94666 1.20347 1.17666 0.85442 0.84232 0.76002 1.90706 1.16498 1.83968 1.51109 1.43290 1.11491 1.03438 1.71312 1.17455 0.97995 0.84107 1.04425 1.20934 0.95895 0.94490 0.97557 1.21119 1.02647 0.93576 1.07037 1.19894 0.93915 0.85200 0.94987 1.83945 1.43348 1.22718 1.63083 1.21776 1.02331 0.94877 1.30171 0.88221 1.26576 1.02931 0.93962 0.98390 1.70181 1.41082 1.02274 1.42065 0.84663 0.75594 0.77876 0.78181 1.18226 1.19448 1.18192 1.20258 0.96046 0.97023 1.06445 1.20737 1.00548 0.91199 0.97612 1.20880 0.88725 0.81979 0.72394 1.90812 1.43561 1.55658 1.47859 1.87433 1.31786 1.20101 1.84035 1.22696 0.75353 0.92611 1.02771 1.22164 1.06387 0.99685 0.92265 1.22169 1.06341 0.99638 0.92358 0.89673 0.85634 0.85497 0.74027 0.84787 0.85740 0.91754 0.85271 0.82811 0.88570 0.85965 0.92139 0.92058 0.85948 0.88608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 10.27 71.24 0.73 -0.49 16 2 C 0.06 0.83 5.13 -17.11 -0.09 0.74 16 3 C -0.32 -7.20 6.16 -19.22 -0.12 -7.32 16 4 C 0.58 17.51 7.66 86.73 0.66 18.17 16 5 O -0.54 -18.48 11.73 -3.99 -0.05 -18.53 16 6 N -0.65 -20.90 5.32 -306.12 -1.63 -22.53 16 7 C 0.05 2.02 6.30 38.19 0.24 2.26 16 8 C -0.07 -2.86 8.69 22.38 0.19 -2.66 16 9 C -0.22 -10.60 9.16 22.37 0.20 -10.39 16 10 C 0.11 5.74 6.65 22.59 0.15 5.89 16 11 O -0.22 -13.76 9.75 -22.86 -0.22 -13.98 16 12 C -0.42 -24.69 9.48 67.91 0.64 -24.04 16 13 H 0.10 5.48 5.20 -2.91 -0.02 5.46 16 14 C -0.02 -1.20 5.49 84.82 0.47 -0.73 16 15 N -0.92 -56.84 13.67 21.61 0.30 -56.54 16 16 Si 1.02 43.52 29.55 68.60 2.03 45.54 16 17 H -0.26 -10.39 7.11 99.48 0.71 -9.69 16 18 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 19 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 20 C -0.18 -7.85 9.98 22.37 0.22 -7.62 16 21 C -0.08 -3.00 9.96 22.38 0.22 -2.78 16 22 C 0.52 12.56 8.53 70.17 0.60 13.16 16 23 O -0.49 -14.80 15.87 19.54 0.31 -14.49 16 24 O -0.32 -5.93 10.58 -54.23 -0.57 -6.50 16 25 C 0.10 0.98 1.38 -11.42 -0.02 0.96 16 26 C -0.15 -0.58 8.94 71.98 0.64 0.07 16 27 C -0.15 -0.55 8.91 71.98 0.64 0.09 16 28 H 0.08 1.51 5.37 -2.39 -0.01 1.50 16 29 H 0.13 0.40 8.14 -2.39 -0.02 0.38 16 30 H 0.13 0.36 8.14 -2.39 -0.02 0.34 16 31 H 0.42 12.52 6.52 -92.71 -0.60 11.92 16 32 H 0.13 5.32 6.22 -2.91 -0.02 5.30 16 33 H 0.12 5.92 5.63 -2.91 -0.02 5.91 16 34 H 0.27 15.50 8.31 -92.70 -0.77 14.73 16 35 H 0.13 5.43 8.06 -2.91 -0.02 5.40 16 36 H 0.15 4.53 8.06 -2.91 -0.02 4.51 16 37 H 0.10 0.21 8.14 -2.39 -0.02 0.19 16 38 H 0.12 -0.30 8.14 -2.39 -0.02 -0.31 16 39 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 40 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 41 H 0.12 -0.32 8.14 -2.39 -0.02 -0.34 16 42 H 0.10 0.19 8.14 -2.39 -0.02 0.17 16 Total: -1.00 -81.51 359.00 6.04 -75.47 By element: Atomic # 1 Polarization: 25.77 SS G_CDS: 0.48 Total: 26.25 kcal Atomic # 6 Polarization: -20.10 SS G_CDS: 5.40 Total: -14.69 kcal Atomic # 7 Polarization: -77.73 SS G_CDS: -1.33 Total: -79.07 kcal Atomic # 8 Polarization: -52.97 SS G_CDS: -0.53 Total: -53.50 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.54 kcal Total: -81.51 6.04 -75.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338088199.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.924 kcal (2) G-P(sol) polarization free energy of solvation -81.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.03 seconds