Wall clock time and date at job start Tue Mar 31 2020 15:56:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38226 * 119.76911 * 2 1 4 4 C 1.38615 * 120.46032 * 180.30119 * 3 2 1 5 5 C 1.38574 * 119.71496 * 359.95134 * 4 3 2 6 6 C 1.40950 * 119.82350 * 0.04582 * 5 4 3 7 7 C 1.38563 * 119.81879 * 359.97438 * 6 5 4 8 8 C 1.47813 * 105.87832 * 179.97438 * 6 5 4 9 9 O 1.21441 * 125.70844 * 180.02562 * 8 6 5 10 10 N 1.34528 * 108.57945 * 359.97438 * 8 6 5 11 11 C 1.46503 * 124.45676 * 179.97438 * 10 8 6 12 12 H 1.08997 * 109.47242 * 359.97438 * 11 10 8 13 13 C 1.52991 * 109.47200 * 120.00373 * 11 10 8 14 14 C 1.50708 * 109.47052 * 240.00509 * 11 10 8 15 15 O 1.20825 * 119.99769 * 359.97438 * 14 11 10 16 16 O 1.34226 * 119.99954 * 180.02562 * 14 11 10 17 17 C 1.45198 * 116.99856 * 179.97438 * 16 14 11 18 18 H 1.09007 * 109.47094 * 29.99869 * 17 16 14 19 19 C 1.52999 * 109.46976 * 269.99979 * 17 16 14 20 20 C 1.50693 * 109.47246 * 150.00011 * 17 16 14 21 21 H 1.08003 * 119.99874 * 359.97438 * 20 17 16 22 22 C 1.37880 * 120.00173 * 180.02562 * 20 17 16 23 23 N 1.31508 * 119.99573 * 359.97438 * 22 20 17 24 24 Si 1.86805 * 119.99816 * 180.02562 * 22 20 17 25 25 H 1.48499 * 109.47068 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.46708 * 119.99797 * 24 22 20 27 27 H 1.48502 * 109.46799 * 239.99770 * 24 22 20 28 28 C 1.34519 * 111.08265 * 0.02562 * 10 8 6 29 29 O 1.21445 * 125.71247 * 179.97438 * 28 10 8 30 30 H 1.08999 * 109.46910 * 269.72826 * 1 2 3 31 31 H 1.08994 * 109.46747 * 29.72402 * 1 2 3 32 32 H 1.08993 * 109.46785 * 149.72927 * 1 2 3 33 33 H 1.07997 * 119.77427 * 0.27705 * 3 2 1 34 34 H 1.07993 * 120.14332 * 179.97438 * 4 3 2 35 35 H 1.07998 * 120.14127 * 180.02562 * 7 6 5 36 36 H 1.09000 * 109.47675 * 179.97438 * 13 11 10 37 37 H 1.08998 * 109.47183 * 300.00108 * 13 11 10 38 38 H 1.08997 * 109.47410 * 59.99629 * 13 11 10 39 39 H 1.09004 * 109.47420 * 60.00147 * 19 17 16 40 40 H 1.09004 * 109.47257 * 179.97438 * 19 17 16 41 41 H 1.08995 * 109.47474 * 299.99809 * 19 17 16 42 42 H 0.97010 * 119.99413 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1934 1.1999 0.0000 4 6 3.5794 1.2166 -0.0063 5 6 4.2807 0.0214 -0.0116 6 6 3.5809 -1.2020 -0.0115 7 6 2.1953 -1.2032 -0.0056 8 6 4.6142 -2.2590 -0.0184 9 8 4.4045 -3.4552 -0.0208 10 7 5.8256 -1.6741 -0.0228 11 6 7.0973 -2.4015 -0.0295 12 1 6.9024 -3.4739 -0.0300 13 6 7.8926 -2.0266 -1.2815 14 6 7.8914 -2.0364 1.1982 15 8 7.4415 -1.2490 1.9966 16 8 9.0989 -2.5852 1.4042 17 6 9.8074 -2.1870 2.6074 18 1 9.0877 -1.9413 3.3883 19 6 10.6729 -0.9614 2.3076 20 6 10.6852 -3.3204 3.0718 21 1 10.7081 -4.2475 2.5183 22 6 11.4585 -3.1742 4.2040 23 7 11.4302 -2.0455 4.8783 24 14 12.5471 -4.5790 4.7793 25 1 12.3996 -5.7307 3.8535 26 1 13.9636 -4.1333 4.7940 27 1 12.1431 -4.9898 6.1480 28 6 5.7157 -0.3334 -0.0189 29 8 6.6405 0.4538 -0.0209 30 1 -0.3633 -0.0049 1.0277 31 1 -0.3632 0.8924 -0.5095 32 1 -0.3633 -0.8875 -0.5180 33 1 1.6460 2.1308 0.0045 34 1 4.1104 2.1570 -0.0067 35 1 1.6538 -2.1376 -0.0051 36 1 8.8390 -2.5674 -1.2864 37 1 7.3183 -2.2906 -2.1695 38 1 8.0875 -0.9541 -1.2806 39 1 10.0379 -0.1416 1.9717 40 1 11.2044 -0.6622 3.2110 41 1 11.3926 -1.2070 1.5268 42 1 11.9745 -1.9425 5.6746 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001341884602.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:56:37 Heat of formation + Delta-G solvation = -125.317429 kcal Electronic energy + Delta-G solvation = -28270.829592 eV Core-core repulsion = 24181.271892 eV Total energy + Delta-G solvation = -4089.557700 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.66875 -41.45550 -39.88047 -39.79083 -37.85211 -37.12130 -35.52260 -35.05181 -32.95284 -31.98929 -31.45320 -28.43384 -27.52595 -26.47615 -25.93924 -24.82119 -23.25723 -22.66192 -21.77517 -20.78424 -19.26326 -18.99302 -18.48127 -18.24135 -17.79896 -17.18770 -17.06426 -16.89466 -16.45797 -16.25443 -15.90504 -15.26705 -15.15657 -15.09785 -14.98458 -14.67212 -14.46610 -14.27543 -13.81334 -13.51514 -13.37244 -13.23608 -13.17262 -13.07263 -12.97618 -12.94951 -12.86664 -12.52221 -12.45859 -12.18093 -11.85143 -11.70010 -11.63263 -11.46303 -11.11123 -11.04883 -10.66222 -10.27672 -9.94773 -8.33604 -6.51458 -1.07747 -0.07629 0.83087 0.90239 1.05341 1.39575 1.40982 1.53455 1.59630 1.96583 2.35693 2.48589 2.56189 2.97102 3.11576 3.50406 3.54359 3.61302 3.67301 3.83286 3.97394 4.07234 4.12987 4.32195 4.42005 4.51042 4.61897 4.69297 4.70987 4.74155 4.82416 4.88641 4.92144 4.96698 5.03422 5.06024 5.27351 5.36047 5.41441 5.43157 5.52354 5.68845 5.80041 5.95407 5.99218 6.37725 6.52112 6.75127 7.19763 8.74742 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.022226 B = 0.002792 C = 0.002756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.475522 B =10024.972654 C =10157.954164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.053 4.053 3 C -0.083 4.083 4 C -0.040 4.040 5 C -0.164 4.164 6 C -0.149 4.149 7 C -0.042 4.042 8 C 0.577 3.423 9 O -0.487 6.487 10 N -0.571 5.571 11 C 0.150 3.850 12 H 0.159 0.841 13 C -0.150 4.150 14 C 0.440 3.560 15 O -0.540 6.540 16 O -0.349 6.349 17 C 0.219 3.781 18 H 0.003 0.997 19 C -0.139 4.139 20 C -0.548 4.548 21 H 0.072 0.928 22 C 0.014 3.986 23 N -0.918 5.918 24 Si 0.988 3.012 25 H -0.261 1.261 26 H -0.270 1.270 27 H -0.276 1.276 28 C 0.571 3.429 29 O -0.485 6.485 30 H 0.089 0.911 31 H 0.095 0.905 32 H 0.083 0.917 33 H 0.182 0.818 34 H 0.153 0.847 35 H 0.159 0.841 36 H 0.104 0.896 37 H 0.107 0.893 38 H 0.059 0.941 39 H 0.016 0.984 40 H 0.082 0.918 41 H 0.050 0.950 42 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.169 5.099 -14.449 27.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.053 4.053 3 C -0.101 4.101 4 C -0.059 4.059 5 C -0.168 4.168 6 C -0.153 4.153 7 C -0.061 4.061 8 C 0.369 3.631 9 O -0.360 6.360 10 N -0.314 5.314 11 C 0.047 3.953 12 H 0.176 0.824 13 C -0.207 4.207 14 C 0.283 3.717 15 O -0.430 6.430 16 O -0.265 6.265 17 C 0.166 3.834 18 H 0.021 0.979 19 C -0.197 4.197 20 C -0.585 4.585 21 H 0.090 0.910 22 C -0.185 4.185 23 N -0.556 5.556 24 Si 0.810 3.190 25 H -0.185 1.185 26 H -0.195 1.195 27 H -0.201 1.201 28 C 0.362 3.638 29 O -0.357 6.357 30 H 0.108 0.892 31 H 0.113 0.887 32 H 0.102 0.898 33 H 0.200 0.800 34 H 0.171 0.829 35 H 0.177 0.823 36 H 0.123 0.877 37 H 0.125 0.875 38 H 0.078 0.922 39 H 0.035 0.965 40 H 0.101 0.899 41 H 0.069 0.931 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -22.704 5.159 -14.033 27.185 hybrid contribution 1.245 -0.426 0.992 1.648 sum -21.458 4.733 -13.041 25.553 Atomic orbital electron populations 1.21003 0.86886 1.05217 1.04257 1.20626 0.98730 0.91397 0.94571 1.21793 0.92064 1.00113 0.96134 1.21118 0.94882 0.96151 0.93736 1.20464 0.91144 0.96650 1.08506 1.20378 0.95351 0.91933 1.07631 1.20997 0.89549 1.00721 0.94831 1.18790 0.82803 0.88132 0.73404 1.90775 1.84074 1.15580 1.45569 1.46509 1.07758 1.09110 1.68018 1.20942 0.81558 1.00064 0.92734 0.82414 1.22105 1.01495 1.03386 0.93730 1.24209 0.81742 0.78141 0.87616 1.90606 1.70900 1.34193 1.47295 1.86447 1.29015 1.64293 1.46726 1.20422 0.89047 0.95060 0.78827 0.97893 1.21964 0.99411 0.95922 1.02425 1.21313 1.25838 0.99880 1.11499 0.91019 1.25908 0.97829 0.99383 0.95408 1.70039 1.40855 1.26518 1.18169 0.85062 0.77780 0.78032 0.78080 1.18497 1.19470 1.20138 1.18902 0.90315 0.81133 0.73439 1.90769 1.46595 1.54007 1.44348 0.89230 0.88670 0.89825 0.80047 0.82935 0.82325 0.87750 0.87459 0.92195 0.96503 0.89904 0.93097 0.91897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.34 10.00 71.24 0.71 0.37 16 2 C -0.05 -0.53 5.89 -19.78 -0.12 -0.65 16 3 C -0.08 -0.83 9.68 22.36 0.22 -0.61 16 4 C -0.04 -0.70 10.09 22.44 0.23 -0.48 16 5 C -0.16 -4.23 6.41 -20.00 -0.13 -4.36 16 6 C -0.15 -3.61 6.41 -20.00 -0.13 -3.74 16 7 C -0.04 -0.67 9.74 22.44 0.22 -0.45 16 8 C 0.58 17.67 8.02 86.82 0.70 18.37 16 9 O -0.49 -16.18 17.43 -3.53 -0.06 -16.24 16 10 N -0.57 -19.27 2.31 -744.39 -1.72 -21.00 16 11 C 0.15 5.19 3.30 44.24 0.15 5.34 16 12 H 0.16 4.83 7.58 -2.39 -0.02 4.82 16 13 C -0.15 -4.16 9.13 71.98 0.66 -3.51 16 14 C 0.44 20.50 6.95 71.24 0.50 21.00 16 15 O -0.54 -28.86 14.12 27.00 0.38 -28.48 16 16 O -0.35 -17.71 9.77 -51.38 -0.50 -18.21 16 17 C 0.22 12.68 2.56 29.85 0.08 12.76 16 18 H 0.00 0.21 7.16 -2.38 -0.02 0.19 16 19 C -0.14 -7.63 9.33 71.98 0.67 -6.96 16 20 C -0.55 -31.95 8.90 25.60 0.23 -31.72 16 21 H 0.07 4.06 7.81 -2.91 -0.02 4.04 16 22 C 0.01 0.81 5.30 84.66 0.45 1.26 16 23 N -0.92 -54.14 11.32 21.45 0.24 -53.90 16 24 Si 0.99 43.68 29.54 68.60 2.03 45.70 16 25 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 26 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 27 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 28 C 0.57 19.71 6.67 86.82 0.58 20.29 16 29 O -0.48 -19.78 15.57 10.09 0.16 -19.63 16 30 H 0.09 0.19 8.14 -2.39 -0.02 0.17 16 31 H 0.09 -0.04 8.08 -2.39 -0.02 -0.06 16 32 H 0.08 0.15 8.08 -2.39 -0.02 0.13 16 33 H 0.18 0.36 8.06 -2.91 -0.02 0.34 16 34 H 0.15 2.29 8.06 -2.91 -0.02 2.26 16 35 H 0.16 1.89 8.06 -2.91 -0.02 1.86 16 36 H 0.10 2.74 8.11 -2.39 -0.02 2.72 16 37 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 38 H 0.06 1.89 6.84 -2.39 -0.02 1.88 16 39 H 0.02 0.86 8.14 -2.38 -0.02 0.84 16 40 H 0.08 4.80 6.07 -2.38 -0.01 4.79 16 41 H 0.05 2.58 8.14 -2.39 -0.02 2.56 16 42 H 0.27 14.87 8.31 -92.70 -0.77 14.10 16 Total: -1.00 -80.83 364.54 6.58 -74.25 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: 1.06 Total: 10.59 kcal Atomic # 6 Polarization: 21.91 SS G_CDS: 5.00 Total: 26.91 kcal Atomic # 7 Polarization: -73.42 SS G_CDS: -1.48 Total: -74.90 kcal Atomic # 8 Polarization: -82.53 SS G_CDS: -0.03 Total: -82.56 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.70 kcal Total: -80.83 6.58 -74.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341884602.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.068 kcal (2) G-P(sol) polarization free energy of solvation -80.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds