Wall clock time and date at job start Tue Mar 31 2020 15:56:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38234 * 119.76933 * 2 1 4 4 C 1.38613 * 120.46025 * 180.02562 * 3 2 1 5 5 C 1.38570 * 119.71675 * 359.95767 * 4 3 2 6 6 C 1.40938 * 119.82337 * 0.06484 * 5 4 3 7 7 C 1.38566 * 119.82404 * 359.95358 * 6 5 4 8 8 C 1.47813 * 105.88193 * 179.97438 * 6 5 4 9 9 O 1.21448 * 125.71303 * 179.97438 * 8 6 5 10 10 N 1.34525 * 108.58034 * 359.97438 * 8 6 5 11 11 C 1.46500 * 124.46523 * 179.73682 * 10 8 6 12 12 H 1.09006 * 109.46730 * 359.97438 * 11 10 8 13 13 C 1.52998 * 109.47459 * 119.99840 * 11 10 8 14 14 C 1.50701 * 109.47058 * 240.00046 * 11 10 8 15 15 O 1.20822 * 120.00052 * 359.97438 * 14 11 10 16 16 O 1.34230 * 119.99924 * 179.97438 * 14 11 10 17 17 C 1.45196 * 116.99916 * 179.97438 * 16 14 11 18 18 H 1.08996 * 109.47338 * 330.00585 * 17 16 14 19 19 C 1.53001 * 109.47047 * 90.00559 * 17 16 14 20 20 C 1.50704 * 109.47328 * 210.00357 * 17 16 14 21 21 H 1.08003 * 119.99873 * 0.02562 * 20 17 16 22 22 C 1.37883 * 120.00113 * 180.02562 * 20 17 16 23 23 N 1.31510 * 119.99613 * 0.02562 * 22 20 17 24 24 Si 1.86800 * 119.99693 * 180.02562 * 22 20 17 25 25 H 1.48490 * 109.47219 * 60.00170 * 24 22 20 26 26 H 1.48503 * 109.46845 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.47019 * 299.99673 * 24 22 20 28 28 C 1.34526 * 111.07811 * 0.02562 * 10 8 6 29 29 O 1.21443 * 125.71265 * 179.97438 * 28 10 8 30 30 H 1.09000 * 109.47120 * 269.97941 * 1 2 3 31 31 H 1.08997 * 109.47351 * 29.98092 * 1 2 3 32 32 H 1.09003 * 109.47117 * 149.98032 * 1 2 3 33 33 H 1.07996 * 119.77164 * 0.02562 * 3 2 1 34 34 H 1.07993 * 120.14097 * 179.97438 * 4 3 2 35 35 H 1.07996 * 120.14296 * 179.97438 * 7 6 5 36 36 H 1.09000 * 109.46946 * 59.99867 * 13 11 10 37 37 H 1.09001 * 109.47193 * 180.02562 * 13 11 10 38 38 H 1.08996 * 109.46920 * 300.00154 * 13 11 10 39 39 H 1.09002 * 109.47281 * 180.02562 * 19 17 16 40 40 H 1.08996 * 109.47211 * 299.99747 * 19 17 16 41 41 H 1.08996 * 109.47030 * 59.99838 * 19 17 16 42 42 H 0.96999 * 119.99743 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1933 1.1999 0.0000 4 6 3.5793 1.2166 -0.0005 5 6 4.2807 0.0215 -0.0002 6 6 3.5809 -1.2019 -0.0007 7 6 2.1953 -1.2032 -0.0005 8 6 4.6142 -2.2589 -0.0007 9 8 4.4046 -3.4551 -0.0007 10 7 5.8257 -1.6740 -0.0009 11 6 7.0974 -2.4013 0.0045 12 1 6.9025 -3.4738 0.0091 13 6 7.9005 -2.0337 -1.2447 14 6 7.8838 -2.0289 1.2349 15 8 7.4289 -1.2369 2.0259 16 8 9.0896 -2.5771 1.4522 17 6 9.7906 -2.1717 2.6574 18 1 9.5091 -1.1508 2.9154 19 6 9.4149 -3.1100 3.8060 20 6 11.2773 -2.2382 2.4203 21 1 11.6574 -2.5532 1.4596 22 6 12.1524 -1.8968 3.4296 23 7 11.6896 -1.5137 4.5995 24 14 13.9953 -1.9786 3.1354 25 1 14.3596 -1.0670 2.0213 26 1 14.7122 -1.5652 4.3685 27 1 14.3790 -3.3692 2.7829 28 6 5.7156 -0.3333 -0.0004 29 8 6.6404 0.4539 0.0001 30 1 -0.3633 -0.0004 1.0277 31 1 -0.3634 0.8901 -0.5135 32 1 -0.3633 -0.8898 -0.5141 33 1 1.6458 2.1308 0.0004 34 1 4.1103 2.1570 -0.0009 35 1 1.6539 -2.1376 -0.0013 36 1 8.0953 -0.9613 -1.2489 37 1 8.8465 -2.5752 -1.2409 38 1 7.3317 -2.3031 -2.1346 39 1 9.9408 -2.8054 4.7109 40 1 8.3396 -3.0619 3.9775 41 1 9.6964 -4.1309 3.5479 42 1 12.3051 -1.2732 5.3095 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001341884603.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:56:41 Heat of formation + Delta-G solvation = -104.640911 kcal Electronic energy + Delta-G solvation = -28265.257915 eV Core-core repulsion = 24176.596816 eV Total energy + Delta-G solvation = -4088.661099 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.52563 -39.76159 -38.85396 -38.60320 -36.14409 -35.61035 -34.13711 -33.26433 -32.12955 -30.92104 -29.49605 -27.74220 -25.39603 -25.24558 -24.79494 -23.60947 -21.80417 -21.64852 -20.21996 -19.38695 -17.91963 -17.54942 -16.93350 -16.63413 -16.30556 -16.04723 -15.51552 -15.36428 -15.19291 -14.86788 -14.40981 -14.33470 -14.20786 -14.15691 -13.97880 -13.23677 -12.93055 -12.75378 -12.53930 -12.45222 -12.36095 -12.18869 -12.01866 -11.86183 -11.59256 -11.23061 -11.06238 -10.86190 -10.61243 -10.41374 -10.34834 -10.27251 -10.20220 -9.61881 -9.56016 -9.45418 -9.23573 -8.93643 -8.49424 -6.18362 -4.25579 -0.13089 0.66100 1.83310 2.06144 2.82405 2.85155 3.27110 3.29191 3.30070 3.32226 3.39801 3.60939 4.14149 4.30142 4.32184 4.36321 4.67195 4.70824 4.86302 4.93112 5.00064 5.07416 5.13588 5.14676 5.17645 5.43005 5.45948 5.55384 5.61382 5.69443 5.74934 5.86580 5.93463 6.13460 6.27610 6.59900 6.61174 6.86858 6.88347 7.10122 7.14773 7.56801 7.61106 7.70564 7.89823 8.11486 8.54106 8.83976 9.39427 10.89155 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.024042 B = 0.002787 C = 0.002739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.341127 B =10044.200593 C =10221.843222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.068 4.068 3 C -0.098 4.098 4 C -0.042 4.042 5 C -0.134 4.134 6 C -0.132 4.132 7 C -0.046 4.046 8 C 0.580 3.420 9 O -0.466 6.466 10 N -0.563 5.563 11 C 0.146 3.854 12 H 0.140 0.860 13 C -0.159 4.159 14 C 0.447 3.553 15 O -0.504 6.504 16 O -0.348 6.348 17 C 0.217 3.783 18 H 0.048 0.952 19 C -0.155 4.155 20 C -0.521 4.521 21 H 0.069 0.931 22 C 0.062 3.938 23 N -0.889 5.889 24 Si 0.914 3.086 25 H -0.274 1.274 26 H -0.285 1.285 27 H -0.274 1.274 28 C 0.577 3.423 29 O -0.439 6.439 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.141 0.859 34 H 0.143 0.857 35 H 0.141 0.859 36 H 0.077 0.923 37 H 0.097 0.903 38 H 0.071 0.929 39 H 0.101 0.899 40 H 0.015 0.985 41 H 0.038 0.962 42 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.941 3.030 -12.036 25.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.068 4.068 3 C -0.116 4.116 4 C -0.060 4.060 5 C -0.138 4.138 6 C -0.136 4.136 7 C -0.065 4.065 8 C 0.369 3.631 9 O -0.338 6.338 10 N -0.306 5.306 11 C 0.044 3.956 12 H 0.157 0.843 13 C -0.217 4.217 14 C 0.287 3.713 15 O -0.393 6.393 16 O -0.264 6.264 17 C 0.165 3.835 18 H 0.065 0.935 19 C -0.213 4.213 20 C -0.559 4.559 21 H 0.088 0.912 22 C -0.140 4.140 23 N -0.527 5.527 24 Si 0.741 3.259 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.199 1.199 28 C 0.365 3.635 29 O -0.307 6.307 30 H 0.097 0.903 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.159 0.841 34 H 0.161 0.839 35 H 0.159 0.841 36 H 0.096 0.904 37 H 0.116 0.884 38 H 0.090 0.910 39 H 0.119 0.881 40 H 0.034 0.966 41 H 0.057 0.943 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -21.457 3.068 -11.566 24.568 hybrid contribution 1.032 -0.019 0.271 1.067 sum -20.425 3.049 -11.294 23.538 Atomic orbital electron populations 1.20878 0.89785 1.03585 1.03184 1.20166 0.96885 0.92385 0.97366 1.21317 0.93352 0.98313 0.98654 1.20791 0.93543 0.96976 0.94731 1.20580 0.93505 0.94948 1.04770 1.20488 0.94528 0.93673 1.04913 1.20626 0.90953 0.98790 0.96142 1.18314 0.82586 0.87807 0.74394 1.90801 1.83847 1.14682 1.44463 1.46338 1.07612 1.08782 1.67874 1.20794 0.81311 0.98867 0.94660 0.84266 1.22107 1.00958 1.04645 0.93989 1.23064 0.82589 0.79221 0.86387 1.90632 1.69609 1.32585 1.46475 1.86460 1.27938 1.63746 1.48209 1.20703 0.90191 0.95612 0.77014 0.93469 1.22173 0.97554 0.99163 1.02388 1.20966 0.88469 1.46719 0.99745 0.91239 1.24896 0.99804 0.94607 0.94686 1.69889 1.35307 1.44234 1.03253 0.86301 0.83267 0.78727 0.77651 1.19935 1.21031 1.19903 1.18231 0.88875 0.81445 0.74924 1.90825 1.44979 1.53188 1.41753 0.90281 0.90791 0.90812 0.84139 0.83885 0.84075 0.90382 0.88382 0.90966 0.88108 0.96635 0.94281 0.92308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.46 10.00 36.00 0.36 -0.10 16 2 C -0.07 -0.47 5.89 -104.49 -0.62 -1.08 16 3 C -0.10 -0.68 9.68 -39.44 -0.38 -1.06 16 4 C -0.04 -0.40 10.09 -39.32 -0.40 -0.80 16 5 C -0.13 -1.73 6.40 -104.83 -0.67 -2.40 16 6 C -0.13 -1.62 6.40 -104.84 -0.67 -2.29 16 7 C -0.05 -0.41 9.74 -39.32 -0.38 -0.80 16 8 C 0.58 8.61 8.02 -12.46 -0.10 8.51 16 9 O -0.47 -7.55 17.43 5.41 0.09 -7.45 16 10 N -0.56 -9.12 2.32 -111.74 -0.26 -9.38 16 11 C 0.15 2.45 3.30 -69.08 -0.23 2.22 16 12 H 0.14 2.06 7.58 -51.93 -0.39 1.66 16 13 C -0.16 -2.24 9.14 37.16 0.34 -1.90 16 14 C 0.45 9.87 6.95 36.01 0.25 10.12 16 15 O -0.50 -12.63 14.10 -24.07 -0.34 -12.97 16 16 O -0.35 -8.44 9.77 -39.26 -0.38 -8.82 16 17 C 0.22 5.98 2.56 -27.88 -0.07 5.91 16 18 H 0.05 1.45 7.16 -51.93 -0.37 1.08 16 19 C -0.16 -4.04 9.32 37.16 0.35 -3.69 16 20 C -0.52 -14.82 8.90 -34.44 -0.31 -15.13 16 21 H 0.07 1.92 7.81 -52.48 -0.41 1.51 16 22 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 23 N -0.89 -25.68 11.32 55.43 0.63 -25.05 16 24 Si 0.91 21.33 29.54 -169.99 -5.02 16.31 16 25 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 26 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 27 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 28 C 0.58 9.55 6.67 -12.45 -0.08 9.47 16 29 O -0.44 -8.54 15.56 -9.12 -0.14 -8.68 16 30 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.07 0.20 8.08 -51.93 -0.42 -0.22 16 32 H 0.07 0.24 8.08 -51.93 -0.42 -0.18 16 33 H 0.14 0.55 8.06 -52.49 -0.42 0.12 16 34 H 0.14 1.18 8.06 -52.49 -0.42 0.75 16 35 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 36 H 0.08 1.23 6.85 -51.93 -0.36 0.87 16 37 H 0.10 1.33 8.11 -51.93 -0.42 0.91 16 38 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.10 2.79 6.07 -51.93 -0.32 2.47 16 40 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 41 H 0.04 0.96 8.14 -51.93 -0.42 0.53 16 42 H 0.27 7.26 8.31 -40.82 -0.34 6.93 16 LS Contribution 364.52 15.07 5.49 5.49 Total: -1.00 -34.80 364.52 -7.84 -42.64 By element: Atomic # 1 Polarization: 4.50 SS G_CDS: -5.20 Total: -0.70 kcal Atomic # 6 Polarization: 11.32 SS G_CDS: -2.71 Total: 8.62 kcal Atomic # 7 Polarization: -34.80 SS G_CDS: 0.37 Total: -34.43 kcal Atomic # 8 Polarization: -37.15 SS G_CDS: -0.77 Total: -37.93 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.80 -7.84 -42.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341884603.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.005 kcal (2) G-P(sol) polarization free energy of solvation -34.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds