Wall clock time and date at job start Tue Mar 31 2020 15:56:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38234 * 119.76933 * 2 1 4 4 C 1.38613 * 120.46025 * 180.02562 * 3 2 1 5 5 C 1.38570 * 119.71675 * 359.95767 * 4 3 2 6 6 C 1.40938 * 119.82337 * 0.06484 * 5 4 3 7 7 C 1.38566 * 119.82404 * 359.95358 * 6 5 4 8 8 C 1.47813 * 105.88193 * 179.97438 * 6 5 4 9 9 O 1.21448 * 125.71303 * 179.97438 * 8 6 5 10 10 N 1.34525 * 108.58034 * 359.97438 * 8 6 5 11 11 C 1.46500 * 124.46523 * 179.73682 * 10 8 6 12 12 H 1.09006 * 109.46730 * 359.97438 * 11 10 8 13 13 C 1.52998 * 109.47459 * 119.99840 * 11 10 8 14 14 C 1.50701 * 109.47058 * 240.00046 * 11 10 8 15 15 O 1.20822 * 120.00052 * 359.97438 * 14 11 10 16 16 O 1.34230 * 119.99924 * 179.97438 * 14 11 10 17 17 C 1.45196 * 116.99916 * 179.97438 * 16 14 11 18 18 H 1.08996 * 109.47338 * 330.00585 * 17 16 14 19 19 C 1.53001 * 109.47047 * 90.00559 * 17 16 14 20 20 C 1.50704 * 109.47328 * 210.00357 * 17 16 14 21 21 H 1.08003 * 119.99873 * 0.02562 * 20 17 16 22 22 C 1.37883 * 120.00113 * 180.02562 * 20 17 16 23 23 N 1.31510 * 119.99613 * 0.02562 * 22 20 17 24 24 Si 1.86800 * 119.99693 * 180.02562 * 22 20 17 25 25 H 1.48490 * 109.47219 * 60.00170 * 24 22 20 26 26 H 1.48503 * 109.46845 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.47019 * 299.99673 * 24 22 20 28 28 C 1.34526 * 111.07811 * 0.02562 * 10 8 6 29 29 O 1.21443 * 125.71265 * 179.97438 * 28 10 8 30 30 H 1.09000 * 109.47120 * 269.97941 * 1 2 3 31 31 H 1.08997 * 109.47351 * 29.98092 * 1 2 3 32 32 H 1.09003 * 109.47117 * 149.98032 * 1 2 3 33 33 H 1.07996 * 119.77164 * 0.02562 * 3 2 1 34 34 H 1.07993 * 120.14097 * 179.97438 * 4 3 2 35 35 H 1.07996 * 120.14296 * 179.97438 * 7 6 5 36 36 H 1.09000 * 109.46946 * 59.99867 * 13 11 10 37 37 H 1.09001 * 109.47193 * 180.02562 * 13 11 10 38 38 H 1.08996 * 109.46920 * 300.00154 * 13 11 10 39 39 H 1.09002 * 109.47281 * 180.02562 * 19 17 16 40 40 H 1.08996 * 109.47211 * 299.99747 * 19 17 16 41 41 H 1.08996 * 109.47030 * 59.99838 * 19 17 16 42 42 H 0.96999 * 119.99743 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1933 1.1999 0.0000 4 6 3.5793 1.2166 -0.0005 5 6 4.2807 0.0215 -0.0002 6 6 3.5809 -1.2019 -0.0007 7 6 2.1953 -1.2032 -0.0005 8 6 4.6142 -2.2589 -0.0007 9 8 4.4046 -3.4551 -0.0007 10 7 5.8257 -1.6740 -0.0009 11 6 7.0974 -2.4013 0.0045 12 1 6.9025 -3.4738 0.0091 13 6 7.9005 -2.0337 -1.2447 14 6 7.8838 -2.0289 1.2349 15 8 7.4289 -1.2369 2.0259 16 8 9.0896 -2.5771 1.4522 17 6 9.7906 -2.1717 2.6574 18 1 9.5091 -1.1508 2.9154 19 6 9.4149 -3.1100 3.8060 20 6 11.2773 -2.2382 2.4203 21 1 11.6574 -2.5532 1.4596 22 6 12.1524 -1.8968 3.4296 23 7 11.6896 -1.5137 4.5995 24 14 13.9953 -1.9786 3.1354 25 1 14.3596 -1.0670 2.0213 26 1 14.7122 -1.5652 4.3685 27 1 14.3790 -3.3692 2.7829 28 6 5.7156 -0.3333 -0.0004 29 8 6.6404 0.4539 0.0001 30 1 -0.3633 -0.0004 1.0277 31 1 -0.3634 0.8901 -0.5135 32 1 -0.3633 -0.8898 -0.5141 33 1 1.6458 2.1308 0.0004 34 1 4.1103 2.1570 -0.0009 35 1 1.6539 -2.1376 -0.0013 36 1 8.0953 -0.9613 -1.2489 37 1 8.8465 -2.5752 -1.2409 38 1 7.3317 -2.3031 -2.1346 39 1 9.9408 -2.8054 4.7109 40 1 8.3396 -3.0619 3.9775 41 1 9.6964 -4.1309 3.5479 42 1 12.3051 -1.2732 5.3095 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001341884603.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:56:40 Heat of formation + Delta-G solvation = -125.163988 kcal Electronic energy + Delta-G solvation = -28266.147862 eV Core-core repulsion = 24176.596816 eV Total energy + Delta-G solvation = -4089.551046 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.66965 -41.45472 -39.88110 -39.79186 -37.85235 -37.12218 -35.52011 -35.05005 -32.95549 -31.99603 -31.43757 -28.43207 -27.53406 -26.48549 -25.94128 -24.81565 -23.23333 -22.66066 -21.78764 -20.79901 -19.26046 -18.93249 -18.52758 -18.23826 -17.79099 -17.19445 -17.13584 -16.81588 -16.46127 -16.26059 -15.87088 -15.26677 -15.15765 -15.10215 -15.00913 -14.70729 -14.53920 -14.08265 -13.89263 -13.54842 -13.30291 -13.24157 -13.22655 -13.04399 -12.98511 -12.94330 -12.85739 -12.51975 -12.45178 -12.20572 -11.85013 -11.69855 -11.63683 -11.46786 -11.13326 -11.04363 -10.64410 -10.27718 -9.94786 -8.32804 -6.50560 -1.07739 -0.07668 0.82911 0.90277 1.05297 1.39577 1.44371 1.51468 1.58734 1.96746 2.35915 2.48662 2.56143 2.97917 3.11590 3.51155 3.54353 3.60937 3.66476 3.83329 3.97127 4.07183 4.13022 4.32069 4.41684 4.50949 4.61811 4.68461 4.69659 4.73262 4.82336 4.88699 4.92369 4.97058 5.03288 5.06124 5.27427 5.36098 5.41477 5.43139 5.52753 5.68846 5.80237 5.95771 5.99350 6.37885 6.52294 6.75124 7.20305 8.75182 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.024042 B = 0.002787 C = 0.002739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.341127 B =10044.200593 C =10221.843222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.053 4.053 3 C -0.083 4.083 4 C -0.041 4.041 5 C -0.164 4.164 6 C -0.149 4.149 7 C -0.042 4.042 8 C 0.578 3.422 9 O -0.486 6.486 10 N -0.571 5.571 11 C 0.151 3.849 12 H 0.162 0.838 13 C -0.150 4.150 14 C 0.440 3.560 15 O -0.540 6.540 16 O -0.349 6.349 17 C 0.219 3.781 18 H 0.002 0.998 19 C -0.142 4.142 20 C -0.549 4.549 21 H 0.072 0.928 22 C 0.014 3.986 23 N -0.918 5.918 24 Si 0.987 3.013 25 H -0.268 1.268 26 H -0.277 1.277 27 H -0.260 1.260 28 C 0.570 3.430 29 O -0.486 6.486 30 H 0.090 0.910 31 H 0.094 0.906 32 H 0.083 0.917 33 H 0.182 0.818 34 H 0.152 0.848 35 H 0.160 0.840 36 H 0.056 0.944 37 H 0.103 0.897 38 H 0.107 0.893 39 H 0.083 0.917 40 H 0.018 0.982 41 H 0.050 0.950 42 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.168 3.119 -13.359 27.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.053 4.053 3 C -0.101 4.101 4 C -0.060 4.060 5 C -0.168 4.168 6 C -0.152 4.152 7 C -0.060 4.060 8 C 0.370 3.630 9 O -0.359 6.359 10 N -0.314 5.314 11 C 0.048 3.952 12 H 0.179 0.821 13 C -0.208 4.208 14 C 0.283 3.717 15 O -0.430 6.430 16 O -0.265 6.265 17 C 0.166 3.834 18 H 0.020 0.980 19 C -0.199 4.199 20 C -0.586 4.586 21 H 0.090 0.910 22 C -0.185 4.185 23 N -0.556 5.556 24 Si 0.810 3.190 25 H -0.193 1.193 26 H -0.202 1.202 27 H -0.185 1.185 28 C 0.361 3.639 29 O -0.359 6.359 30 H 0.108 0.892 31 H 0.113 0.887 32 H 0.102 0.898 33 H 0.199 0.801 34 H 0.169 0.831 35 H 0.178 0.822 36 H 0.075 0.925 37 H 0.122 0.878 38 H 0.126 0.874 39 H 0.102 0.898 40 H 0.037 0.963 41 H 0.070 0.930 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -23.729 3.139 -12.907 27.193 hybrid contribution 1.504 0.029 0.694 1.657 sum -22.224 3.168 -12.213 25.556 Atomic orbital electron populations 1.21003 0.86863 1.05221 1.04271 1.20628 0.98736 0.91389 0.94552 1.21789 0.92019 1.00145 0.96154 1.21113 0.94916 0.96149 0.93791 1.20455 0.91099 0.96701 1.08520 1.20378 0.95362 0.91893 1.07613 1.21001 0.89514 1.00724 0.94785 1.18764 0.82728 0.88128 0.73399 1.90774 1.84058 1.15485 1.45577 1.46511 1.07791 1.09072 1.68012 1.20941 0.81575 1.00086 0.92621 0.82117 1.22104 1.01421 1.03315 0.93954 1.24210 0.81791 0.78159 0.87567 1.90605 1.70149 1.34065 1.48171 1.86445 1.29185 1.63939 1.46907 1.20415 0.90716 0.93592 0.78644 0.98002 1.21992 0.97459 0.99334 1.01145 1.21255 0.89044 1.47977 1.00341 0.90978 1.25904 1.05009 0.93501 0.94115 1.70018 1.37233 1.44255 1.04105 0.85170 0.76633 0.79380 0.77853 1.19308 1.20180 1.18492 1.18933 0.90329 0.81189 0.73443 1.90782 1.46681 1.54071 1.44328 0.89199 0.88713 0.89783 0.80087 0.83061 0.82220 0.92459 0.87828 0.87399 0.89820 0.96266 0.93045 0.91905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.33 10.00 71.23 0.71 0.39 16 2 C -0.05 -0.52 5.89 -19.78 -0.12 -0.64 16 3 C -0.08 -0.84 9.68 22.36 0.22 -0.62 16 4 C -0.04 -0.73 10.09 22.44 0.23 -0.50 16 5 C -0.16 -4.27 6.40 -20.00 -0.13 -4.40 16 6 C -0.15 -3.57 6.40 -20.00 -0.13 -3.70 16 7 C -0.04 -0.65 9.74 22.44 0.22 -0.43 16 8 C 0.58 17.47 8.02 86.82 0.70 18.17 16 9 O -0.49 -15.78 17.43 -3.55 -0.06 -15.84 16 10 N -0.57 -19.26 2.32 -744.37 -1.72 -20.98 16 11 C 0.15 5.21 3.30 44.24 0.15 5.36 16 12 H 0.16 4.80 7.58 -2.38 -0.02 4.78 16 13 C -0.15 -4.31 9.14 71.98 0.66 -3.65 16 14 C 0.44 20.49 6.95 71.24 0.50 20.99 16 15 O -0.54 -28.87 14.10 27.07 0.38 -28.49 16 16 O -0.35 -17.70 9.77 -51.42 -0.50 -18.20 16 17 C 0.22 12.68 2.56 29.85 0.08 12.75 16 18 H 0.00 0.14 7.16 -2.39 -0.02 0.12 16 19 C -0.14 -7.65 9.32 71.98 0.67 -6.98 16 20 C -0.55 -32.06 8.90 25.60 0.23 -31.83 16 21 H 0.07 4.06 7.81 -2.91 -0.02 4.04 16 22 C 0.01 0.81 5.30 84.66 0.45 1.26 16 23 N -0.92 -54.29 11.32 21.45 0.24 -54.05 16 24 Si 0.99 43.76 29.54 68.60 2.03 45.79 16 25 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 26 H -0.28 -11.82 7.11 99.48 0.71 -11.12 16 27 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 28 C 0.57 19.95 6.67 86.82 0.58 20.53 16 29 O -0.49 -20.41 15.56 10.36 0.16 -20.24 16 30 H 0.09 0.17 8.14 -2.39 -0.02 0.15 16 31 H 0.09 -0.04 8.08 -2.39 -0.02 -0.06 16 32 H 0.08 0.14 8.08 -2.39 -0.02 0.12 16 33 H 0.18 0.40 8.06 -2.91 -0.02 0.37 16 34 H 0.15 2.36 8.06 -2.91 -0.02 2.33 16 35 H 0.16 1.83 8.06 -2.91 -0.02 1.80 16 36 H 0.06 1.90 6.85 -2.39 -0.02 1.88 16 37 H 0.10 2.83 8.11 -2.39 -0.02 2.81 16 38 H 0.11 2.30 8.14 -2.39 -0.02 2.28 16 39 H 0.08 4.81 6.07 -2.39 -0.01 4.79 16 40 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.05 2.58 8.14 -2.39 -0.02 2.56 16 42 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 Total: -1.00 -81.02 364.52 6.58 -74.44 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: 1.06 Total: 10.90 kcal Atomic # 6 Polarization: 21.69 SS G_CDS: 5.00 Total: 26.69 kcal Atomic # 7 Polarization: -73.55 SS G_CDS: -1.48 Total: -75.03 kcal Atomic # 8 Polarization: -82.76 SS G_CDS: -0.02 Total: -82.78 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Total: -81.02 6.58 -74.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341884603.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.720 kcal (2) G-P(sol) polarization free energy of solvation -81.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds