Wall clock time and date at job start Tue Mar 31 2020 16:54:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47140 * 2 1 4 4 H 1.09001 * 109.46812 * 54.99771 * 3 2 1 5 5 C 1.50703 * 109.47304 * 175.00079 * 3 2 1 6 6 H 1.07998 * 119.99574 * 119.99490 * 5 3 2 7 7 C 1.37874 * 119.99789 * 299.99650 * 5 3 2 8 8 N 1.31518 * 120.00144 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99733 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.46762 * 60.00562 * 9 7 5 11 11 H 1.48506 * 109.46725 * 180.02562 * 9 7 5 12 12 H 1.48494 * 109.47116 * 300.00217 * 9 7 5 13 13 O 1.42905 * 109.46812 * 295.00173 * 3 2 1 14 14 C 1.34930 * 117.00143 * 89.99955 * 13 3 2 15 15 O 1.21646 * 119.99611 * 359.97438 * 14 13 3 16 16 C 1.41777 * 120.00016 * 179.97438 * 14 13 3 17 17 C 1.35090 * 119.99986 * 179.97438 * 16 14 13 18 18 C 1.46969 * 120.00047 * 179.97438 * 17 16 14 19 19 C 1.39985 * 120.08165 * 0.02562 * 18 17 16 20 20 C 1.37787 * 120.08588 * 179.97438 * 19 18 17 21 21 C 1.38746 * 120.10562 * 0.02562 * 20 19 18 22 22 C 1.39723 * 120.14070 * 0.02562 * 21 20 19 23 23 C 1.38039 * 120.15072 * 359.68757 * 22 21 20 24 24 N 1.40267 * 119.24581 * 179.89672 * 22 21 20 25 25 C 1.35082 * 118.95947 * 15.61318 * 24 22 21 26 26 O 1.21298 * 120.13634 * 181.63202 * 25 24 22 27 27 C 1.50752 * 119.72095 * 1.61450 * 25 24 22 28 28 O 1.35878 * 120.49457 * 180.08782 * 21 20 19 29 29 H 1.08998 * 109.46677 * 299.99780 * 1 2 3 30 30 H 1.09000 * 109.46863 * 60.00110 * 1 2 3 31 31 H 1.08996 * 109.46657 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47475 * 239.99834 * 2 1 3 33 33 H 1.09000 * 109.47312 * 119.99601 * 2 1 3 34 34 H 0.96997 * 119.99752 * 179.97438 * 8 7 5 35 35 H 1.08004 * 120.00105 * 359.97438 * 16 14 13 36 36 H 1.08001 * 120.00455 * 0.02562 * 17 16 14 37 37 H 1.08005 * 119.96200 * 359.97401 * 19 18 17 38 38 H 1.08000 * 119.94883 * 179.97438 * 20 19 18 39 39 H 1.07996 * 120.16386 * 180.28217 * 23 22 21 40 40 H 0.96999 * 120.52057 * 195.62805 * 24 22 21 41 41 H 1.09000 * 109.44421 * 88.63919 * 27 25 24 42 42 H 1.09000 * 109.43858 * 208.56355 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5420 1.4444 0.1238 6 1 4.1472 1.8889 -0.6524 7 6 4.1433 0.8786 1.2280 8 7 3.4062 0.3368 2.1729 9 14 6.0051 0.8802 1.3811 10 1 6.5004 2.2801 1.3808 11 1 6.3979 0.2159 2.6498 12 1 6.5967 0.1454 0.2343 13 8 1.6619 2.0814 -1.2211 14 6 0.4726 2.7184 -1.2364 15 8 -0.2240 2.7300 -0.2393 16 6 0.0348 3.3743 -2.4147 17 6 -1.1562 4.0116 -2.4302 18 6 -1.6097 4.6919 -3.6515 19 6 -0.8092 4.6801 -4.7998 20 6 -1.2345 5.3174 -5.9449 21 6 -2.4571 5.9732 -5.9632 22 6 -3.2612 5.9903 -4.8207 23 6 -2.8458 5.3494 -3.6708 24 7 -4.4927 6.6607 -4.8594 25 6 -5.0183 6.9945 -6.0582 26 8 -6.0674 7.6006 -6.1157 27 6 -4.2953 6.6108 -7.3242 28 8 -2.8851 6.6027 -7.0887 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.8294 -0.0616 2.9495 35 1 0.6535 3.3643 -3.2999 36 1 -1.7747 4.0220 -1.5450 37 1 0.1432 4.1707 -4.7882 38 1 -0.6149 5.3072 -6.8295 39 1 -3.4692 5.3587 -2.7890 40 1 -4.9595 6.8814 -4.0383 41 1 -4.6165 5.6178 -7.6387 42 1 -4.5278 7.3322 -8.1075 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001344580566.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:54:04 Heat of formation + Delta-G solvation = -113.984661 kcal Electronic energy + Delta-G solvation = -26782.048486 eV Core-core repulsion = 22692.982212 eV Total energy + Delta-G solvation = -4089.066274 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.88323 -39.87904 -39.33293 -38.18799 -36.24913 -35.70167 -33.62347 -33.42459 -31.37628 -30.81294 -29.95722 -28.20104 -27.27532 -25.13468 -23.60143 -23.25740 -22.54768 -20.57346 -19.74741 -19.35508 -19.19607 -17.98617 -17.45348 -17.31468 -16.65201 -16.57719 -15.72523 -15.59095 -15.32436 -15.22869 -14.94844 -14.61766 -14.45958 -14.21753 -13.76364 -13.52777 -13.11848 -12.88430 -12.59846 -12.40691 -12.24413 -11.88744 -11.54938 -11.50164 -11.42764 -11.24367 -11.20356 -10.95231 -10.67981 -10.65740 -10.30161 -9.99143 -9.83770 -9.69187 -9.35052 -8.92979 -8.77882 -8.44054 -8.15511 -6.17683 -4.24927 0.13472 0.68305 1.50779 1.91659 2.22826 2.76075 3.24447 3.26184 3.29875 3.32077 3.43997 3.69041 3.76000 4.11716 4.32002 4.37437 4.49080 4.60299 4.70805 4.73690 4.92685 5.14089 5.19295 5.24569 5.44616 5.61818 5.74124 5.77293 5.96721 6.11866 6.22237 6.24954 6.28959 6.35091 6.38689 6.48224 6.76242 6.87735 6.96500 7.17475 7.24607 7.24998 7.62084 7.74827 7.94453 8.16720 8.62906 8.89992 9.40483 10.89007 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.028844 B = 0.001988 C = 0.001917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.520356 B =14079.865106 C =14600.329029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.137 4.137 3 C 0.217 3.783 4 H 0.046 0.954 5 C -0.521 4.521 6 H 0.068 0.932 7 C 0.063 3.937 8 N -0.888 5.888 9 Si 0.911 3.089 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.274 1.274 13 O -0.344 6.344 14 C 0.482 3.518 15 O -0.517 6.517 16 C -0.167 4.167 17 C -0.032 4.032 18 C -0.054 4.054 19 C -0.089 4.089 20 C -0.105 4.105 21 C 0.082 3.918 22 C 0.088 3.912 23 C -0.100 4.100 24 N -0.659 5.659 25 C 0.491 3.509 26 O -0.513 6.513 27 C 0.050 3.950 28 O -0.300 6.300 29 H 0.053 0.947 30 H 0.031 0.969 31 H 0.032 0.968 32 H 0.041 0.959 33 H 0.108 0.892 34 H 0.266 0.734 35 H 0.138 0.862 36 H 0.140 0.860 37 H 0.146 0.854 38 H 0.145 0.855 39 H 0.140 0.860 40 H 0.418 0.582 41 H 0.102 0.898 42 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.205 9.768 -17.529 24.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.175 4.175 3 C 0.164 3.836 4 H 0.064 0.936 5 C -0.559 4.559 6 H 0.086 0.914 7 C -0.140 4.140 8 N -0.525 5.525 9 Si 0.738 3.262 10 H -0.200 1.200 11 H -0.211 1.211 12 H -0.200 1.200 13 O -0.260 6.260 14 C 0.329 3.671 15 O -0.410 6.410 16 C -0.186 4.186 17 C -0.051 4.051 18 C -0.055 4.055 19 C -0.108 4.108 20 C -0.124 4.124 21 C 0.036 3.964 22 C -0.007 4.007 23 C -0.120 4.120 24 N -0.306 5.306 25 C 0.278 3.722 26 O -0.388 6.388 27 C -0.028 4.028 28 O -0.215 6.215 29 H 0.072 0.928 30 H 0.050 0.950 31 H 0.051 0.949 32 H 0.060 0.940 33 H 0.126 0.874 34 H 0.076 0.924 35 H 0.155 0.845 36 H 0.158 0.842 37 H 0.163 0.837 38 H 0.163 0.837 39 H 0.158 0.842 40 H 0.257 0.743 41 H 0.119 0.881 42 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -13.786 10.065 -17.403 24.377 hybrid contribution 0.486 -0.081 0.816 0.953 sum -13.300 9.984 -16.587 23.488 Atomic orbital electron populations 1.21861 0.98442 0.98950 1.00704 1.22045 0.92573 0.99542 1.03321 1.20265 0.95057 0.88881 0.79424 0.93648 1.21013 0.89675 1.39028 1.06214 0.91411 1.24890 0.99184 0.94791 0.95103 1.69882 1.35434 1.37748 1.09472 0.86352 0.83972 0.78468 0.77450 1.20003 1.21072 1.19955 1.86191 1.33871 1.62327 1.43631 1.19804 0.81387 0.77720 0.88222 1.90828 1.55308 1.58868 1.36034 1.21605 0.97870 1.00698 0.98425 1.22314 0.95109 0.91756 0.95918 1.18795 0.93946 0.98784 0.93949 1.21410 1.00107 0.98164 0.91092 1.20488 0.95034 0.96934 0.99954 1.18812 0.95236 0.97750 0.84611 1.17881 0.87471 0.99912 0.95427 1.20815 0.96727 0.97600 0.96881 1.43745 1.20329 1.56788 1.09775 1.21563 0.85658 0.78823 0.86159 1.90831 1.22614 1.38519 1.86788 1.23212 0.78708 1.05606 0.95243 1.86230 1.22499 1.72577 1.40150 0.92816 0.94973 0.94884 0.94034 0.87439 0.92370 0.84457 0.84182 0.83668 0.83743 0.84180 0.74289 0.88057 0.83595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.07 8.55 37.16 0.32 -2.75 16 2 C -0.14 -3.36 5.48 -26.73 -0.15 -3.50 16 3 C 0.22 5.68 2.22 -27.88 -0.06 5.62 16 4 H 0.05 1.32 7.11 -51.93 -0.37 0.95 16 5 C -0.52 -14.40 8.89 -34.44 -0.31 -14.71 16 6 H 0.07 1.84 7.81 -52.49 -0.41 1.43 16 7 C 0.06 1.70 5.29 -17.82 -0.09 1.60 16 8 N -0.89 -24.86 11.29 55.43 0.63 -24.23 16 9 Si 0.91 20.82 29.54 -169.99 -5.02 15.79 16 10 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 11 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 12 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 13 O -0.34 -7.95 9.68 -41.12 -0.40 -8.35 16 14 C 0.48 9.55 6.11 32.08 0.20 9.75 16 15 O -0.52 -11.40 13.23 -19.38 -0.26 -11.66 16 16 C -0.17 -2.35 9.33 -39.35 -0.37 -2.72 16 17 C -0.03 -0.37 9.41 -37.17 -0.35 -0.72 16 18 C -0.05 -0.50 5.87 -105.04 -0.62 -1.12 16 19 C -0.09 -0.73 9.40 -39.09 -0.37 -1.10 16 20 C -0.11 -0.79 9.98 -39.56 -0.39 -1.19 16 21 C 0.08 0.69 6.46 -38.84 -0.25 0.44 16 22 C 0.09 0.72 6.53 -83.51 -0.55 0.17 16 23 C -0.10 -0.80 9.69 -38.99 -0.38 -1.18 16 24 N -0.66 -5.04 5.47 -9.68 -0.05 -5.09 16 25 C 0.49 4.20 7.94 -10.82 -0.09 4.11 16 26 O -0.51 -5.98 17.95 5.54 0.10 -5.88 16 27 C 0.05 0.30 7.16 36.03 0.26 0.55 16 28 O -0.30 -2.36 10.44 -19.36 -0.20 -2.56 16 29 H 0.05 1.21 7.75 -51.93 -0.40 0.81 16 30 H 0.03 0.66 6.05 -51.93 -0.31 0.34 16 31 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.04 0.99 8.14 -51.93 -0.42 0.56 16 33 H 0.11 2.87 5.95 -51.93 -0.31 2.56 16 34 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 35 H 0.14 1.57 6.06 -52.48 -0.32 1.25 16 36 H 0.14 1.66 7.45 -52.49 -0.39 1.27 16 37 H 0.15 1.01 6.15 -52.48 -0.32 0.69 16 38 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 39 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 40 H 0.42 2.57 8.89 -40.82 -0.36 2.21 16 41 H 0.10 0.41 8.14 -51.93 -0.42 -0.02 16 42 H 0.15 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 357.45 15.07 5.39 5.39 Total: -1.00 -33.09 357.45 -7.88 -40.97 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: -4.87 Total: 2.36 kcal Atomic # 6 Polarization: -3.54 SS G_CDS: -3.19 Total: -6.74 kcal Atomic # 7 Polarization: -29.90 SS G_CDS: 0.57 Total: -29.33 kcal Atomic # 8 Polarization: -27.70 SS G_CDS: -0.76 Total: -28.45 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.09 -7.88 -40.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344580566.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.015 kcal (2) G-P(sol) polarization free energy of solvation -33.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds