Wall clock time and date at job start Tue Mar 31 2020 16:54:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47140 * 2 1 4 4 H 1.09001 * 109.46812 * 54.99771 * 3 2 1 5 5 C 1.50703 * 109.47304 * 175.00079 * 3 2 1 6 6 H 1.07998 * 119.99574 * 119.99490 * 5 3 2 7 7 C 1.37874 * 119.99789 * 299.99650 * 5 3 2 8 8 N 1.31518 * 120.00144 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99733 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.46762 * 60.00562 * 9 7 5 11 11 H 1.48506 * 109.46725 * 180.02562 * 9 7 5 12 12 H 1.48494 * 109.47116 * 300.00217 * 9 7 5 13 13 O 1.42905 * 109.46812 * 295.00173 * 3 2 1 14 14 C 1.34930 * 117.00143 * 89.99955 * 13 3 2 15 15 O 1.21646 * 119.99611 * 359.97438 * 14 13 3 16 16 C 1.41777 * 120.00016 * 179.97438 * 14 13 3 17 17 C 1.35090 * 119.99986 * 179.97438 * 16 14 13 18 18 C 1.46969 * 120.00047 * 179.97438 * 17 16 14 19 19 C 1.39985 * 120.08165 * 0.02562 * 18 17 16 20 20 C 1.37787 * 120.08588 * 179.97438 * 19 18 17 21 21 C 1.38746 * 120.10562 * 0.02562 * 20 19 18 22 22 C 1.39723 * 120.14070 * 0.02562 * 21 20 19 23 23 C 1.38039 * 120.15072 * 359.68757 * 22 21 20 24 24 N 1.40267 * 119.24581 * 179.89672 * 22 21 20 25 25 C 1.35082 * 118.95947 * 15.61318 * 24 22 21 26 26 O 1.21298 * 120.13634 * 181.63202 * 25 24 22 27 27 C 1.50752 * 119.72095 * 1.61450 * 25 24 22 28 28 O 1.35878 * 120.49457 * 180.08782 * 21 20 19 29 29 H 1.08998 * 109.46677 * 299.99780 * 1 2 3 30 30 H 1.09000 * 109.46863 * 60.00110 * 1 2 3 31 31 H 1.08996 * 109.46657 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47475 * 239.99834 * 2 1 3 33 33 H 1.09000 * 109.47312 * 119.99601 * 2 1 3 34 34 H 0.96997 * 119.99752 * 179.97438 * 8 7 5 35 35 H 1.08004 * 120.00105 * 359.97438 * 16 14 13 36 36 H 1.08001 * 120.00455 * 0.02562 * 17 16 14 37 37 H 1.08005 * 119.96200 * 359.97401 * 19 18 17 38 38 H 1.08000 * 119.94883 * 179.97438 * 20 19 18 39 39 H 1.07996 * 120.16386 * 180.28217 * 23 22 21 40 40 H 0.96999 * 120.52057 * 195.62805 * 24 22 21 41 41 H 1.09000 * 109.44421 * 88.63919 * 27 25 24 42 42 H 1.09000 * 109.43858 * 208.56355 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5420 1.4444 0.1238 6 1 4.1472 1.8889 -0.6524 7 6 4.1433 0.8786 1.2280 8 7 3.4062 0.3368 2.1729 9 14 6.0051 0.8802 1.3811 10 1 6.5004 2.2801 1.3808 11 1 6.3979 0.2159 2.6498 12 1 6.5967 0.1454 0.2343 13 8 1.6619 2.0814 -1.2211 14 6 0.4726 2.7184 -1.2364 15 8 -0.2240 2.7300 -0.2393 16 6 0.0348 3.3743 -2.4147 17 6 -1.1562 4.0116 -2.4302 18 6 -1.6097 4.6919 -3.6515 19 6 -0.8092 4.6801 -4.7998 20 6 -1.2345 5.3174 -5.9449 21 6 -2.4571 5.9732 -5.9632 22 6 -3.2612 5.9903 -4.8207 23 6 -2.8458 5.3494 -3.6708 24 7 -4.4927 6.6607 -4.8594 25 6 -5.0183 6.9945 -6.0582 26 8 -6.0674 7.6006 -6.1157 27 6 -4.2953 6.6108 -7.3242 28 8 -2.8851 6.6027 -7.0887 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.8294 -0.0616 2.9495 35 1 0.6535 3.3643 -3.2999 36 1 -1.7747 4.0220 -1.5450 37 1 0.1432 4.1707 -4.7882 38 1 -0.6149 5.3072 -6.8295 39 1 -3.4692 5.3587 -2.7890 40 1 -4.9595 6.8814 -4.0383 41 1 -4.6165 5.6178 -7.6387 42 1 -4.5278 7.3322 -8.1075 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001344580566.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:54:03 Heat of formation + Delta-G solvation = -134.738392 kcal Electronic energy + Delta-G solvation = -26782.948435 eV Core-core repulsion = 22692.982212 eV Total energy + Delta-G solvation = -4089.966223 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.50683 -41.46430 -40.08164 -38.89142 -37.82444 -36.50381 -35.43941 -34.54268 -33.29105 -31.54663 -30.66540 -29.40742 -28.67830 -26.21609 -25.08284 -24.14186 -23.65325 -22.02923 -21.09390 -20.18234 -19.98902 -19.03580 -18.71817 -18.49458 -17.89660 -17.39021 -17.15581 -17.00919 -16.42233 -16.26114 -15.97206 -15.64109 -15.25571 -15.02136 -14.82849 -14.68170 -14.43808 -14.12374 -13.98983 -13.45623 -13.38960 -13.30092 -13.10444 -13.04775 -12.78898 -12.57946 -12.52500 -12.19524 -12.13436 -12.11432 -11.73593 -11.44574 -11.36066 -11.27360 -10.80698 -10.75730 -10.47522 -9.61464 -8.89437 -8.24141 -6.40902 -0.73122 0.04654 0.65541 1.19833 1.43378 1.46916 1.54901 1.63770 2.10941 2.20985 2.24671 2.51933 2.71927 2.88191 3.05228 3.48699 3.63799 3.96628 3.98552 4.07691 4.12534 4.24765 4.30637 4.40798 4.43391 4.45778 4.60647 4.61873 4.81441 4.87562 4.97258 5.03823 5.09899 5.25134 5.25511 5.37722 5.44976 5.49796 5.53654 5.55178 5.67887 5.71671 6.03379 6.15693 6.19350 6.63219 6.64499 7.07089 7.31874 8.82300 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.028844 B = 0.001988 C = 0.001917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.520356 B =14079.865106 C =14600.329029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.131 4.131 3 C 0.222 3.778 4 H 0.004 0.996 5 C -0.550 4.550 6 H 0.066 0.934 7 C 0.016 3.984 8 N -0.915 5.915 9 Si 0.980 3.020 10 H -0.269 1.269 11 H -0.279 1.279 12 H -0.264 1.264 13 O -0.356 6.356 14 C 0.479 3.521 15 O -0.552 6.552 16 C -0.205 4.205 17 C 0.016 3.984 18 C -0.078 4.078 19 C -0.079 4.079 20 C -0.107 4.107 21 C 0.086 3.914 22 C 0.078 3.922 23 C -0.088 4.088 24 N -0.656 5.656 25 C 0.488 3.512 26 O -0.550 6.550 27 C 0.051 3.949 28 O -0.305 6.305 29 H 0.035 0.965 30 H 0.038 0.962 31 H 0.059 0.941 32 H 0.045 0.955 33 H 0.084 0.916 34 H 0.269 0.731 35 H 0.164 0.836 36 H 0.135 0.865 37 H 0.159 0.841 38 H 0.166 0.834 39 H 0.156 0.844 40 H 0.422 0.578 41 H 0.126 0.874 42 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.138 10.244 -19.834 25.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.169 4.169 3 C 0.168 3.832 4 H 0.022 0.978 5 C -0.587 4.587 6 H 0.084 0.916 7 C -0.184 4.184 8 N -0.553 5.553 9 Si 0.803 3.197 10 H -0.194 1.194 11 H -0.204 1.204 12 H -0.188 1.188 13 O -0.272 6.272 14 C 0.329 3.671 15 O -0.447 6.447 16 C -0.224 4.224 17 C -0.003 4.003 18 C -0.078 4.078 19 C -0.097 4.097 20 C -0.126 4.126 21 C 0.039 3.961 22 C -0.017 4.017 23 C -0.109 4.109 24 N -0.303 5.303 25 C 0.277 3.723 26 O -0.428 6.428 27 C -0.026 4.026 28 O -0.220 6.220 29 H 0.054 0.946 30 H 0.058 0.942 31 H 0.078 0.922 32 H 0.064 0.936 33 H 0.102 0.898 34 H 0.079 0.921 35 H 0.181 0.819 36 H 0.153 0.847 37 H 0.176 0.824 38 H 0.184 0.816 39 H 0.174 0.826 40 H 0.263 0.737 41 H 0.143 0.857 42 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -13.723 10.542 -19.721 26.237 hybrid contribution 0.273 -0.080 1.423 1.451 sum -13.450 10.462 -18.298 25.003 Atomic orbital electron populations 1.21705 0.96258 1.00483 1.00143 1.21891 0.94505 0.98339 1.02197 1.19918 0.94494 0.89383 0.79417 0.97831 1.21338 0.90662 1.39874 1.06841 0.91577 1.25813 1.04189 0.93969 0.94441 1.70015 1.37439 1.37947 1.09851 0.85280 0.77826 0.78753 0.77834 1.19395 1.20378 1.18843 1.86164 1.35968 1.63176 1.41908 1.20700 0.79890 0.76896 0.89626 1.90805 1.55826 1.60376 1.37719 1.21439 0.99935 1.03734 0.97263 1.22433 0.93213 0.88175 0.96442 1.18669 0.95117 1.00566 0.93491 1.21615 1.00182 0.97246 0.90661 1.20712 0.94955 0.96417 1.00468 1.19080 0.95367 0.96877 0.84768 1.17915 0.87724 1.00463 0.95592 1.20957 0.96242 0.96259 0.97421 1.43757 1.20168 1.56310 1.10078 1.22056 0.85250 0.78011 0.87029 1.90817 1.24324 1.40338 1.87304 1.23465 0.77332 1.07591 0.94249 1.86230 1.23568 1.72376 1.39776 0.94614 0.94246 0.92152 0.93648 0.89810 0.92133 0.81852 0.84697 0.82390 0.81600 0.82649 0.73747 0.85673 0.81475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.63 8.55 71.98 0.62 -5.01 16 2 C -0.13 -6.63 5.48 30.60 0.17 -6.46 16 3 C 0.22 12.11 2.22 29.85 0.07 12.18 16 4 H 0.00 0.24 7.11 -2.39 -0.02 0.22 16 5 C -0.55 -31.21 8.89 25.60 0.23 -30.98 16 6 H 0.07 3.66 7.81 -2.91 -0.02 3.64 16 7 C 0.02 0.86 5.29 84.65 0.45 1.31 16 8 N -0.91 -52.52 11.29 21.45 0.24 -52.28 16 9 Si 0.98 42.79 29.54 68.60 2.03 44.82 16 10 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 11 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 12 H -0.26 -11.02 7.11 99.48 0.71 -10.32 16 13 O -0.36 -16.94 9.68 -58.46 -0.57 -17.51 16 14 C 0.48 19.48 6.11 68.70 0.42 19.90 16 15 O -0.55 -25.33 13.23 19.36 0.26 -25.07 16 16 C -0.21 -5.65 9.33 22.42 0.21 -5.44 16 17 C 0.02 0.35 9.41 23.83 0.22 0.58 16 18 C -0.08 -1.26 5.87 -20.13 -0.12 -1.38 16 19 C -0.08 -1.06 9.40 22.59 0.21 -0.84 16 20 C -0.11 -1.26 9.98 22.28 0.22 -1.04 16 21 C 0.09 1.18 6.46 22.75 0.15 1.33 16 22 C 0.08 1.09 6.53 38.10 0.25 1.34 16 23 C -0.09 -1.22 9.69 22.66 0.22 -1.00 16 24 N -0.66 -8.88 5.47 -302.76 -1.66 -10.54 16 25 C 0.49 7.52 7.94 87.63 0.70 8.22 16 26 O -0.55 -12.35 17.95 -3.09 -0.06 -12.41 16 27 C 0.05 0.46 7.16 71.25 0.51 0.97 16 28 O -0.31 -3.88 10.44 -92.17 -0.96 -4.85 16 29 H 0.03 1.66 7.75 -2.39 -0.02 1.64 16 30 H 0.04 1.63 6.05 -2.39 -0.01 1.62 16 31 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 32 H 0.04 2.20 8.14 -2.39 -0.02 2.18 16 33 H 0.08 4.63 5.95 -2.39 -0.01 4.62 16 34 H 0.27 14.52 8.31 -92.71 -0.77 13.75 16 35 H 0.16 3.49 6.06 -2.91 -0.02 3.47 16 36 H 0.14 3.10 7.45 -2.91 -0.02 3.08 16 37 H 0.16 1.71 6.15 -2.91 -0.02 1.69 16 38 H 0.17 1.23 8.06 -2.91 -0.02 1.21 16 39 H 0.16 1.58 8.06 -2.91 -0.02 1.56 16 40 H 0.42 4.65 8.89 -92.71 -0.82 3.82 16 41 H 0.13 0.59 8.14 -2.39 -0.02 0.57 16 42 H 0.17 0.80 8.14 -2.39 -0.02 0.78 16 Total: -1.00 -74.25 357.45 4.06 -70.19 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: 0.26 Total: 13.98 kcal Atomic # 6 Polarization: -10.85 SS G_CDS: 4.52 Total: -6.33 kcal Atomic # 7 Polarization: -61.41 SS G_CDS: -1.41 Total: -62.82 kcal Atomic # 8 Polarization: -58.51 SS G_CDS: -1.33 Total: -59.83 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.82 kcal Total: -74.25 4.06 -70.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344580566.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.546 kcal (2) G-P(sol) polarization free energy of solvation -74.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds