Wall clock time and date at job start Tue Mar 31 2020 16:54:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47315 * 2 1 4 4 H 1.09010 * 109.46782 * 304.99955 * 3 2 1 5 5 C 1.50695 * 109.47586 * 185.00264 * 3 2 1 6 6 H 1.07999 * 119.99932 * 240.00547 * 5 3 2 7 7 C 1.37878 * 120.00194 * 59.99146 * 5 3 2 8 8 N 1.31507 * 120.00090 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 119.99878 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47372 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.46766 * 120.00446 * 9 7 5 12 12 H 1.48498 * 109.47009 * 240.00168 * 9 7 5 13 13 O 1.42899 * 109.47108 * 64.99504 * 3 2 1 14 14 C 1.34930 * 117.00490 * 270.00340 * 13 3 2 15 15 O 1.21656 * 119.99886 * 359.97438 * 14 13 3 16 16 C 1.41779 * 120.00307 * 179.97438 * 14 13 3 17 17 C 1.35096 * 119.99864 * 179.97438 * 16 14 13 18 18 C 1.46963 * 119.99843 * 180.02562 * 17 16 14 19 19 C 1.39995 * 120.08254 * 0.02562 * 18 17 16 20 20 C 1.37788 * 120.08614 * 179.97438 * 19 18 17 21 21 C 1.38737 * 120.10496 * 359.97438 * 20 19 18 22 22 C 1.39739 * 120.14271 * 0.02562 * 21 20 19 23 23 C 1.38033 * 120.14678 * 359.96101 * 22 21 20 24 24 N 1.40263 * 119.24032 * 179.97438 * 22 21 20 25 25 C 1.35084 * 118.97183 * 15.55261 * 24 22 21 26 26 O 1.21293 * 120.14006 * 181.61225 * 25 24 22 27 27 C 1.50752 * 119.72202 * 1.63848 * 25 24 22 28 28 O 1.35878 * 120.49182 * 180.08237 * 21 20 19 29 29 H 1.09000 * 109.47286 * 60.00450 * 1 2 3 30 30 H 1.09008 * 109.47489 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47660 * 299.99958 * 1 2 3 32 32 H 1.08995 * 109.47183 * 239.99687 * 2 1 3 33 33 H 1.09005 * 109.46940 * 119.99869 * 2 1 3 34 34 H 0.97003 * 120.00754 * 179.97438 * 8 7 5 35 35 H 1.07994 * 120.00042 * 0.02562 * 16 14 13 36 36 H 1.07994 * 120.00094 * 0.02562 * 17 16 14 37 37 H 1.08001 * 119.96176 * 359.68630 * 19 18 17 38 38 H 1.07995 * 119.94608 * 179.97438 * 20 19 18 39 39 H 1.08001 * 120.15485 * 180.02562 * 23 22 21 40 40 H 0.96998 * 120.51635 * 195.53793 * 24 22 21 41 41 H 1.09002 * 109.44227 * 208.53925 * 27 25 24 42 42 H 1.08999 * 109.41522 * 88.62784 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 3.5418 1.4443 -0.1239 6 1 4.1471 1.8888 0.6523 7 6 4.1432 0.8783 -1.2280 8 7 3.4062 0.3373 -2.1732 9 14 6.0049 0.8801 -1.3811 10 1 6.5988 1.5444 -0.1931 11 1 6.4961 -0.5190 -1.4626 12 1 6.3999 1.6156 -2.6092 13 8 1.6619 2.0814 1.2210 14 6 0.4725 2.7185 1.2363 15 8 -0.2238 2.7309 0.2388 16 6 0.0343 3.3735 2.4149 17 6 -1.1563 4.0117 2.4300 18 6 -1.6103 4.6912 3.6516 19 6 -0.8102 4.6785 4.8003 20 6 -1.2356 5.3159 5.9454 21 6 -2.4576 5.9725 5.9633 22 6 -3.2618 5.9896 4.8206 23 6 -2.8436 5.3539 3.6690 24 7 -4.4940 6.6586 4.8600 25 6 -4.7359 7.5256 5.8673 26 8 -5.8053 8.0936 5.9383 27 6 -3.6711 7.7845 6.9025 28 8 -2.8840 6.6051 7.0877 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.8292 -0.0606 -2.9502 35 1 0.6526 3.3628 3.3003 36 1 -1.7744 4.0227 1.5445 37 1 0.1396 4.1645 4.7904 38 1 -0.6167 5.3043 6.8304 39 1 -3.4648 5.3674 2.7857 40 1 -5.1619 6.5015 4.1744 41 1 -4.1420 8.0581 7.8467 42 1 -3.0302 8.5998 6.5670 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001344580567.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:54:09 Heat of formation + Delta-G solvation = -114.096577 kcal Electronic energy + Delta-G solvation = -26780.294545 eV Core-core repulsion = 22691.223418 eV Total energy + Delta-G solvation = -4089.071127 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.88171 -39.87869 -39.33355 -38.18646 -36.24998 -35.70214 -33.62346 -33.42714 -31.37807 -30.81362 -29.95624 -28.20079 -27.27779 -25.13541 -23.60278 -23.25822 -22.54824 -20.57375 -19.74775 -19.35416 -19.19666 -17.98632 -17.45360 -17.31162 -16.65312 -16.58183 -15.72979 -15.58080 -15.34152 -15.22538 -14.94329 -14.61654 -14.46142 -14.21462 -13.77372 -13.50833 -13.11638 -12.89041 -12.63058 -12.43533 -12.13773 -11.95524 -11.57423 -11.46088 -11.43585 -11.26038 -11.18666 -10.97805 -10.67234 -10.65084 -10.28592 -9.98949 -9.84359 -9.68702 -9.35179 -8.92951 -8.76893 -8.44930 -8.15484 -6.18307 -4.25295 0.13407 0.68345 1.50727 1.91725 2.22946 2.76081 3.22984 3.24487 3.30074 3.34712 3.44046 3.68765 3.76200 4.11645 4.31788 4.37594 4.49125 4.60364 4.70790 4.73708 4.92709 5.13740 5.19327 5.24572 5.44594 5.61811 5.74097 5.77298 5.96741 6.11866 6.22313 6.24962 6.29053 6.35086 6.38701 6.48315 6.76231 6.87777 6.96543 7.17468 7.24615 7.24956 7.62179 7.74666 7.94302 8.16497 8.62840 8.90231 9.40240 10.88521 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.028012 B = 0.001991 C = 0.001921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.342845 B =14056.496163 C =14574.569330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.137 4.137 3 C 0.216 3.784 4 H 0.046 0.954 5 C -0.520 4.520 6 H 0.069 0.931 7 C 0.062 3.938 8 N -0.887 5.887 9 Si 0.910 3.090 10 H -0.270 1.270 11 H -0.282 1.282 12 H -0.282 1.282 13 O -0.344 6.344 14 C 0.482 3.518 15 O -0.517 6.517 16 C -0.167 4.167 17 C -0.032 4.032 18 C -0.054 4.054 19 C -0.089 4.089 20 C -0.105 4.105 21 C 0.082 3.918 22 C 0.088 3.912 23 C -0.100 4.100 24 N -0.659 5.659 25 C 0.491 3.509 26 O -0.513 6.513 27 C 0.050 3.950 28 O -0.300 6.300 29 H 0.053 0.947 30 H 0.032 0.968 31 H 0.031 0.969 32 H 0.108 0.892 33 H 0.041 0.959 34 H 0.265 0.735 35 H 0.138 0.862 36 H 0.140 0.860 37 H 0.146 0.854 38 H 0.145 0.855 39 H 0.140 0.860 40 H 0.418 0.582 41 H 0.147 0.853 42 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.156 11.768 16.843 23.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.175 4.175 3 C 0.163 3.837 4 H 0.064 0.936 5 C -0.558 4.558 6 H 0.087 0.913 7 C -0.140 4.140 8 N -0.525 5.525 9 Si 0.737 3.263 10 H -0.195 1.195 11 H -0.207 1.207 12 H -0.208 1.208 13 O -0.260 6.260 14 C 0.329 3.671 15 O -0.410 6.410 16 C -0.186 4.186 17 C -0.051 4.051 18 C -0.055 4.055 19 C -0.108 4.108 20 C -0.124 4.124 21 C 0.036 3.964 22 C -0.007 4.007 23 C -0.120 4.120 24 N -0.306 5.306 25 C 0.278 3.722 26 O -0.387 6.387 27 C -0.028 4.028 28 O -0.215 6.215 29 H 0.072 0.928 30 H 0.051 0.949 31 H 0.050 0.950 32 H 0.126 0.874 33 H 0.060 0.940 34 H 0.075 0.925 35 H 0.155 0.845 36 H 0.158 0.842 37 H 0.163 0.837 38 H 0.163 0.837 39 H 0.158 0.842 40 H 0.257 0.743 41 H 0.164 0.836 42 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -12.777 11.990 16.755 24.244 hybrid contribution 0.461 -0.125 -0.828 0.956 sum -12.316 11.865 15.927 23.370 Atomic orbital electron populations 1.21862 0.98433 0.98962 1.00705 1.22040 0.92585 0.99532 1.03321 1.20273 0.95098 0.88890 0.79433 0.93642 1.21090 0.89676 1.38824 1.06195 0.91308 1.24893 0.99195 0.94809 0.95120 1.69897 1.35264 1.37916 1.09447 0.86248 0.84001 0.77866 0.78197 1.19484 1.20745 1.20790 1.86191 1.33867 1.62322 1.43630 1.19808 0.81384 0.77716 0.88228 1.90830 1.55318 1.58866 1.36030 1.21606 0.97863 1.00685 0.98442 1.22314 0.95093 0.91770 0.95917 1.18794 0.93972 0.98745 0.93954 1.21411 1.00184 0.98071 0.91114 1.20486 0.92678 0.99612 0.99628 1.18812 0.94049 0.98885 0.84677 1.17882 0.87188 1.00347 0.95258 1.20810 0.96540 0.98467 0.96215 1.43744 1.16402 1.41759 1.28734 1.21561 0.89584 0.78605 0.82445 1.90829 1.25127 1.48139 1.74651 1.23217 0.91135 0.87897 1.00527 1.86236 1.67744 1.39170 1.28312 0.92813 0.94877 0.94973 0.87444 0.94026 0.92480 0.84456 0.84182 0.83670 0.83744 0.84180 0.74298 0.83590 0.88050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.08 8.55 37.15 0.32 -2.76 16 2 C -0.14 -3.36 5.48 -26.74 -0.15 -3.51 16 3 C 0.22 5.66 2.22 -27.89 -0.06 5.60 16 4 H 0.05 1.32 7.11 -51.92 -0.37 0.95 16 5 C -0.52 -14.35 8.89 -34.44 -0.31 -14.66 16 6 H 0.07 1.87 7.81 -52.49 -0.41 1.46 16 7 C 0.06 1.68 5.29 -17.82 -0.09 1.59 16 8 N -0.89 -24.85 11.29 55.43 0.63 -24.22 16 9 Si 0.91 20.79 29.54 -169.99 -5.02 15.77 16 10 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 11 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 12 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 13 O -0.34 -7.94 9.68 -41.12 -0.40 -8.34 16 14 C 0.48 9.55 6.11 32.08 0.20 9.75 16 15 O -0.52 -11.40 13.23 -19.38 -0.26 -11.66 16 16 C -0.17 -2.35 9.33 -39.35 -0.37 -2.72 16 17 C -0.03 -0.37 9.41 -37.17 -0.35 -0.72 16 18 C -0.05 -0.50 5.87 -105.04 -0.62 -1.11 16 19 C -0.09 -0.73 9.40 -39.09 -0.37 -1.10 16 20 C -0.11 -0.79 9.98 -39.56 -0.39 -1.19 16 21 C 0.08 0.69 6.45 -38.84 -0.25 0.43 16 22 C 0.09 0.72 6.54 -83.51 -0.55 0.18 16 23 C -0.10 -0.80 9.69 -38.99 -0.38 -1.18 16 24 N -0.66 -5.04 5.47 -9.68 -0.05 -5.09 16 25 C 0.49 4.20 7.94 -10.82 -0.09 4.12 16 26 O -0.51 -5.98 17.95 5.55 0.10 -5.88 16 27 C 0.05 0.30 7.16 36.03 0.26 0.56 16 28 O -0.30 -2.36 10.44 -19.36 -0.20 -2.56 16 29 H 0.05 1.22 7.75 -51.93 -0.40 0.81 16 30 H 0.03 0.63 8.14 -51.92 -0.42 0.21 16 31 H 0.03 0.66 6.05 -51.93 -0.31 0.35 16 32 H 0.11 2.87 5.95 -51.93 -0.31 2.56 16 33 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 35 H 0.14 1.57 6.06 -52.49 -0.32 1.25 16 36 H 0.14 1.66 7.45 -52.49 -0.39 1.27 16 37 H 0.15 1.01 6.15 -52.49 -0.32 0.69 16 38 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 39 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 40 H 0.42 2.57 8.88 -40.82 -0.36 2.20 16 41 H 0.15 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 357.46 15.07 5.39 5.39 Total: -1.00 -33.13 357.46 -7.88 -41.01 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -4.87 Total: 2.33 kcal Atomic # 6 Polarization: -3.54 SS G_CDS: -3.19 Total: -6.73 kcal Atomic # 7 Polarization: -29.89 SS G_CDS: 0.57 Total: -29.31 kcal Atomic # 8 Polarization: -27.69 SS G_CDS: -0.76 Total: -28.45 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.13 -7.88 -41.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344580567.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.089 kcal (2) G-P(sol) polarization free energy of solvation -33.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds